mRNA_H-paniculata_contig6301.14083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6301.14083.1
Unique NamemRNA_H-paniculata_contig6301.14083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: D7FMI3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.230e-25
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            +VA+GDSLPHDILGA+RA + S+FVAGGVHF+EL V QG   VP+D A  +AF  HL GEG P +V+PAFRW
Sbjct:  301 IVAVGDSLPHDILGALRAQLASVFVAGGVHFDELRVEQGGAGVPSDEAYSAAFSKHLEGEGTPTHVMPAFRW 372          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A9V6S2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V6S2_MONBE)

HSP 1 Score: 75.1 bits (183), Expect = 2.090e-14
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFR 213
            +VA+GDSL HDI GA++A +  +FV GGVH  ELG+  G G+ P    C   F   LG +  P +V+PAF+
Sbjct:  235 IVAVGDSLHHDIEGALKAGLDCVFVTGGVHAPELGIAAGVGQAPDPARCEKLFAQVLGADRRPTHVIPAFK 305          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A7S4D550_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D550_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 3.070e-14
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 AIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            A+GDSL HDILGA RA I SIF+ GG+H EELG+ +G  E P+  A    +  H  G G P + +PAF W
Sbjct:  294 AVGDSLDHDILGASRAGIESIFIIGGIHSEELGIKEGGRECPSQKALEKLYARH--GGGVPTHSMPAFVW 361          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A8K1CP86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP86_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 8.280e-14
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            +V IGDS+ HDI GA+  +I S+F+AGG+H EEL V  G GE   D +  +A  T  G E  P YVVP FRW
Sbjct:  244 VVHIGDSMHHDIQGAVNTEIDSVFIAGGIHGEELAVKLGPGEPEMDASHLTAIFTRYGIE--PTYVVPGFRW 313          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A7S0LMC8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LMC8_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-11
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEG---APNYVVPAFR 213
            ++ +GDSLPHD+LGA  A I S+FV  GVH+ EL VTQ + E P + A  S        E    AP Y +PAFR
Sbjct:  191 LIGVGDSLPHDVLGAAGAGIDSLFVCSGVHYRELNVTQASAEKP-EAALLSQLLDGFAREHDGCAPTYTLPAFR 263          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A0G4GV15_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GV15_9ALVE)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   10 IGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            IGDSLPHD++GA ++ + S+FVA GVH  ELGV Q    +P+       F+ +   +  P +V+P F+W
Sbjct: 1078 IGDSLPHDVIGAYQSSMDSVFVASGVHANELGVPQYGDAIPSTKRLEEFFDNNGLSKAKPAFVLPKFQW 1146          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A835Z8N2_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.400e-10
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   10 IGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            +GDSL HDI GA+RA I S+FV  GVH  ELG+ QG+   P   A     + HL  +  P +++   +W
Sbjct:  240 VGDSLSHDIKGALRAGIDSMFVLSGVHSAELGIEQGSDAWPAHDAVARVLQAHLPPDARPTHIITHLKW 308          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: UPI001FB05309 (uncharacterized protein LOC124934371 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB05309)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-10
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 VAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            +A+GDSL HDI GA+ + I S+F++GG+H +ELG+T    EV   ++  +  E +   + +P+YV+PAF W
Sbjct:  250 IAVGDSLHHDIKGAMASGIESVFISGGIHADELGLTSYNQEVSDPSSLKALAEKY---DASPSYVLPAFIW 317          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A0G4EGR2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EGR2_VITBC)

HSP 1 Score: 63.2 bits (152), Expect = 6.190e-10
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGV-TQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFRW 216
            ++A+GDSLPHDILGA R    S+F+AGGVH+ ELG+  QG  E+P +    +  + +   + +  Y +P+F W
Sbjct:  329 VLAVGDSLPHDILGANREGYPSVFIAGGVHYCELGLGRQGGSEMPDEERLRAVLDEY---DVSATYCLPSFVW 398          
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Match: A0A6T8NQS0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NQS0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.800e-10
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 IGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACYSAFETHLGGEGAPNYVVPAFR 213
            +GDSL HD+ GA  A I+S+F+ GG+H +ELG T   GE+P +TA  + F+     +  P +V+P F+
Sbjct:   53 VGDSLHHDVAGARAAGISSVFIVGGIHRDELGST--IGEMPDETALVNLFQAE---KQTPTHVLPLFQ 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6301.14083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMI3_ECTSI7.230e-2565.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A9V6S2_MONBE2.090e-1446.48Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S4D550_HETAK3.070e-1451.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1CP86_PYTOL8.280e-1451.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0LMC8_9EUKA5.780e-1147.30Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A0G4GV15_9ALVE1.010e-1042.03Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A835Z8N2_9STRA1.400e-1042.03HAD-like domain-containing protein n=1 Tax=Tribone... [more]
UPI001FB053091.460e-1042.25uncharacterized protein LOC124934371 n=1 Tax=Impat... [more]
A0A0G4EGR2_VITBC6.190e-1042.47Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A6T8NQS0_9STRA8.800e-1042.65Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6301contigH-paniculata_contig6301:11518..11736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7FMI3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haloacid dehalogenase-like hydrolase
EggNOG OGs2QU6A@2759,COG0647@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930724.8710625-CDS-H-paniculata_contig6301:11517..117361622930724.8710625-CDS-H-paniculata_contig6301:11517..11736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6301 11518..11736 -
1691481424.1347177-CDS-H-paniculata_contig6301:11517..117361691481424.1347177-CDS-H-paniculata_contig6301:11517..11736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6301 11518..11736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6301.14083.1prot_H-paniculata_contig6301.14083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6301 11518..11736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6301.14083.1

>prot_H-paniculata_contig6301.14083.1 ID=prot_H-paniculata_contig6301.14083.1|Name=mRNA_H-paniculata_contig6301.14083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MVAIGDSLPHDILGAIRADITSIFVAGGVHFEELGVTQGAGEVPTDTACY
SAFETHLGGEGAPNYVVPAFRW*
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mRNA from alignment at H-paniculata_contig6301:11518..11736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6301.14083.1 ID=mRNA_H-paniculata_contig6301.14083.1|Name=mRNA_H-paniculata_contig6301.14083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig6301:11518..11736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCTATCGGTGATTCCTTGCCTCACGATATTCTGGGTGCAATCCG CGCCGATATTACTTCGATATTTGTTGCTGGAGGGGTGCACTTTGAAGAGT TAGGGGTGACGCAGGGTGCCGGCGAGGTGCCAACAGATACGGCGTGTTAC TCGGCGTTTGAGACGCATTTAGGGGGCGAAGGTGCGCCGAACTACGTTGT GCCGGCATTTCGATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6301:11518..11736-

>mRNA_H-paniculata_contig6301.14083.1 ID=mRNA_H-paniculata_contig6301.14083.1|Name=mRNA_H-paniculata_contig6301.14083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig6301:11518..11736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGCTATCGGTGATTCCTTGCCTCACGATATTCTGGGTGCAATCCG
CGCCGATATTACTTCGATATTTGTTGCTGGAGGGGTGCACTTTGAAGAGT
TAGGGGTGACGCAGGGTGCCGGCGAGGTGCCAACAGATACGGCGTGTTAC
TCGGCGTTTGAGACGCATTTAGGGGGCGAAGGTGCGCCGAACTACGTTGT
GCCGGCATTTCGATGGTGAATGGTGGCTATCGGTGATTCCTTGCCTCACG
ATATTCTGGGTGCAATCCGCGCCGATATTACTTCGATATTTGTTGCTGGA
GGGGTGCACTTTGAAGAGTTAGGGGTGACGCAGGGTGCCGGCGAGGTGCC
AACAGATACGGCGTGTTACTCGGCGTTTGAGACGCATTTAGGGGGCGAAG
GTGCGCCGAACTACGTTGTGCCGGCATTTCGATGGTGA
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