mRNA_H-paniculata_contig630.14077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig630.14077.1
Unique NamemRNA_H-paniculata_contig630.14077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A6H5JE22_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE22_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.200e-48
Identity = 95/191 (49.74%), Postives = 119/191 (62.30%), Query Frame = 2 
Query:   98 SRDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYDASVGD-----MSSFRTRARQGPASASSARGRSWGPSYGSPRG---TPPILRVWGTVTHPKTLLWVVPIAIVGFLTFGATEKEETIPLQKVRAWYNPVTMRWETPAPWDPHFRKYEHLVQKVDKNLVH 646
            ++D YRVLGV  +A    IR AYLRL K+HHPD++K   + +QFKAI  AWE +G+KSKRA+YD  + D      + +R R   GP  A    GR    SY  PRG    PPILR +   THP+ L+  +P+A VG++ FG  E E      KV AW NP T RWETPAPWD  FRK  HLVQKVD+++VH
Sbjct:   54 AQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGGPEGAHRNGGRR---SYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGDHESEVPGSSVKVDAWLNPSTQRWETPAPWDEEFRKRRHLVQKVDRSIVH 241
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: D7G772_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G772_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.400e-25
Identity = 63/135 (46.67%), Postives = 81/135 (60.00%), Query Frame = 2 
Query:   98 SRDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYDASVGD-----MSSFRTRARQGPASASSARGRSWGPSYGSPRG---TPPILRVWGTVTHPKTLLWVVPIAIV 478
            ++D YRVLGV  +A  E IR AYLRL K+HHPD++K   + DQFKAI  AWE +G+KSKRA+YD  + D      + +R R    P  A    GR    SY  PRG    PPILR +   THP+ L+  +P+A V
Sbjct:    7 AQDHYRVLGVDRNATHETIREAYLRLVKKHHPDVSKGAQSEDQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGAQRTGGRR---SYAPPRGHTRMPPILRAFELATHPRVLMVGIPLACV 138
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: F0XWN8_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWN8_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.750e-13
Identity = 63/167 (37.72%), Postives = 84/167 (50.30%), Query Frame = 2 
Query:  110 YRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYDASVGDMSSFRTRARQGPASASSARGRSWGPSYGSPRGTPPILRVWGTVTHPKTL-LWVVPIAIVGFLTFGATEKEETIPLQKVR-AWYNPVTMRWETPAPWDPHFRK 604
            Y VL V  DA Q + ++AYLRLAKR+HPD N     A +FKA++ AWET+G+  KRA +D  +    S   R   G A A   R           R    + R+ G    P+ L      +A+V F + GA  +   +    VR  W NP T R E PAPWDP ++K
Sbjct:  269 YDVLEVDADASQAECKAAYLRLAKRYHPDANPDESAATKFKAVSEAWETVGDPEKRARFDERL----SSGVRGGGGDAWAKQRRDARRNAFGSDSRKLTQMERLLG----PRGLGAAAAALALVLFFSSGA--RAPAVDESLVRDCWINPRTRRVEPPAPWDPDYKK 425
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A2S3U3B2_LACPN (Chaperone protein DnaJ n=1 Tax=Lactiplantibacillus plantarum subsp. plantarum TaxID=337330 RepID=A0A2S3U3B2_LACPN)

HSP 1 Score: 76.3 bits (186), Expect = 4.440e-13
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  101 RDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            +D Y+VLGV  DA Q++I+ AY +L+K++HPDLN   G  ++FKA+N A+ETLG+  KRA YD
Sbjct:    4 QDLYKVLGVEKDASQDEIKKAYRKLSKKYHPDLNHEPGAEEKFKAVNEAYETLGDAQKRAQYD 66
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A3D2CES6_9DELT (J domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D2CES6_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 6.560e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  101 RDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYDASVGDMS 310
            RDPY VLGVP  A  + IR  Y  LA++ HPDLNK+ G AD+FK IN A E +G+  KR ++D   G+MS
Sbjct:    2 RDPYSVLGVPKSADTDTIRKRYKELARKFHPDLNKSAGAADRFKQINEAHEVIGDPEKRKLWDE-FGEMS 70
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A7C3R993_9CHLR (Chaperone protein DnaJ n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3R993_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 8.950e-12
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  101 RDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            RD Y VLGVP +A +EDIRSA+ RLA+++HPD+NK  G A++FK IN A++ L +  KRA YD
Sbjct:    6 RDYYEVLGVPREASKEDIRSAFRRLARQYHPDVNKEPGAAEKFKEINEAYQVLSDDEKRARYD 68
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: DNAJ_LACPL (Chaperone protein DnaJ n=67 Tax=Lactobacillaceae TaxID=33958 RepID=DNAJ_LACPL)

HSP 1 Score: 76.3 bits (186), Expect = 2.230e-11
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  101 RDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            +D Y+VLGV  DA Q++I+ AY +L+K++HPDLN   G  ++FKA+N A+ETLG+  KRA YD
Sbjct:    4 QDLYKVLGVEKDASQDEIKKAYRKLSKKYHPDLNHEPGAEEKFKAVNEAYETLGDAQKRAQYD 66
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: UPI000F54E072 (dnaJ homolog subfamily A member 3, mitochondrial-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F54E072)

HSP 1 Score: 77.0 bits (188), Expect = 2.340e-11
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:   50 GAVESYRKLASFASTMSRDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            GA+ S+R+  +   T  +D Y++LGVP +A Q++I+ AY  LAK++HPD NK    A++F+ I+ A+E L + +KR+ YD
Sbjct:   65 GAISSHREFHTSDPTYKKDYYKILGVPRNADQKEIKKAYFNLAKKYHPDTNKGADAAEKFQEISEAYEVLSDDNKRSTYD 144
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A2H5Z7L3_9BACT (Chaperone protein DnaJ n=5 Tax=Bacteria TaxID=2 RepID=A0A2H5Z7L3_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 3.020e-11
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:  101 RDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            +D Y++LGVP DA QE IR AYLRLA+++HPD+NK+    ++FK IN A+E L +  KRA YD
Sbjct:    4 KDYYKILGVPRDADQETIRKAYLRLARKYHPDVNKSPEAEEKFKEINEAYEVLRDPEKRAKYD 66
[Close]
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Match: A0A2K1IP88_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IP88_PHYPA)

HSP 1 Score: 75.9 bits (185), Expect = 5.630e-11
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:   38 RTSRGAVESYRKLASFASTMSRDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINFAWETLGNKSKRAMYD 289
            +TSRG      KL      M+ D Y VLGVP  A +++I+SAY +LA+++HPD+NK  G  D+FK I+ A+E L +  KR+MYD
Sbjct:  116 KTSRGRXXXXXKLCV---RMAADYYSVLGVPKGATKQEIKSAYRKLARKYHPDVNKQPGAEDKFKEISSAYEILSDDQKRSMYD 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig630.14077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE22_9PHAE4.200e-4849.74J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7G772_ECTSI6.400e-2546.67Heat shock protein 40 like protein/ DnaJ domain co... [more]
F0XWN8_AURAN2.750e-1337.72J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A2S3U3B2_LACPN4.440e-1353.97Chaperone protein DnaJ n=1 Tax=Lactiplantibacillus... [more]
A0A3D2CES6_9DELT6.560e-1252.86J domain-containing protein n=1 Tax=Deltaproteobac... [more]
A0A7C3R993_9CHLR8.950e-1257.14Chaperone protein DnaJ n=1 Tax=Chloroflexi bacteri... [more]
DNAJ_LACPL2.230e-1153.97Chaperone protein DnaJ n=67 Tax=Lactobacillaceae T... [more]
UPI000F54E0722.340e-1142.50dnaJ homolog subfamily A member 3, mitochondrial-l... [more]
A0A2H5Z7L3_9BACT3.020e-1155.56Chaperone protein DnaJ n=5 Tax=Bacteria TaxID=2 Re... [more]
A0A2K1IP88_PHYPA5.630e-1146.43Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig630contigH-paniculata_contig630:1941..9466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D7G772
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1422
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930723.9084451-UTR-H-paniculata_contig630:1940..19901622930723.9084451-UTR-H-paniculata_contig630:1940..1990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 1941..1990 +
1691481423.6658823-UTR-H-paniculata_contig630:1940..19901691481423.6658823-UTR-H-paniculata_contig630:1940..1990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 1941..1990 +
1622930723.9238622-UTR-H-paniculata_contig630:2959..30031622930723.9238622-UTR-H-paniculata_contig630:2959..3003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 2960..3003 +
1691481423.6846056-UTR-H-paniculata_contig630:2959..30031691481423.6846056-UTR-H-paniculata_contig630:2959..3003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 2960..3003 +
1622930724.0237799-UTR-H-paniculata_contig630:8717..94661622930724.0237799-UTR-H-paniculata_contig630:8717..9466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 8718..9466 +
1691481423.760289-UTR-H-paniculata_contig630:8717..94661691481423.760289-UTR-H-paniculata_contig630:8717..9466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig630 8718..9466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930723.9408576-CDS-H-paniculata_contig630:3003..31621622930723.9408576-CDS-H-paniculata_contig630:3003..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 3004..3162 +
1691481423.6972725-CDS-H-paniculata_contig630:3003..31621691481423.6972725-CDS-H-paniculata_contig630:3003..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 3004..3162 +
1622930723.9535286-CDS-H-paniculata_contig630:3754..38871622930723.9535286-CDS-H-paniculata_contig630:3754..3887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 3755..3887 +
1691481423.70877-CDS-H-paniculata_contig630:3754..38871691481423.70877-CDS-H-paniculata_contig630:3754..3887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 3755..3887 +
1622930723.967718-CDS-H-paniculata_contig630:4415..45071622930723.967718-CDS-H-paniculata_contig630:4415..4507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 4416..4507 +
1691481423.718987-CDS-H-paniculata_contig630:4415..45071691481423.718987-CDS-H-paniculata_contig630:4415..4507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 4416..4507 +
1622930723.9802246-CDS-H-paniculata_contig630:6290..63671622930723.9802246-CDS-H-paniculata_contig630:6290..6367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 6291..6367 +
1691481423.7311532-CDS-H-paniculata_contig630:6290..63671691481423.7311532-CDS-H-paniculata_contig630:6290..6367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 6291..6367 +
1622930723.9953074-CDS-H-paniculata_contig630:7075..71451622930723.9953074-CDS-H-paniculata_contig630:7075..7145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 7076..7145 +
1691481423.740034-CDS-H-paniculata_contig630:7075..71451691481423.740034-CDS-H-paniculata_contig630:7075..7145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 7076..7145 +
1622930724.0098016-CDS-H-paniculata_contig630:8669..87171622930724.0098016-CDS-H-paniculata_contig630:8669..8717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 8670..8717 +
1691481423.7515113-CDS-H-paniculata_contig630:8669..87171691481423.7515113-CDS-H-paniculata_contig630:8669..8717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig630 8670..8717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig630.14077.1prot_H-paniculata_contig630.14077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig630 3004..8717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig630.14077.1

>prot_H-paniculata_contig630.14077.1 ID=prot_H-paniculata_contig630.14077.1|Name=mRNA_H-paniculata_contig630.14077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MSRDPYRVLGVPYDARQEDIRSAYLRLAKRHHPDLNKTCGNADQFKAINF
AWETLGNKSKRAMYDASVGDMSSFRTRARQGPASASSARGRSWGPSYGSP
RGTPPILRVWGTVTHPKTLLWVVPIAIVGFLTFGATEKEETIPLQKVRAW
YNPVTMRWETPAPWDPHFRKYEHLVQKVDKNLVHVRESTRRS*
back to top

mRNA from alignment at H-paniculata_contig630:1941..9466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig630.14077.1 ID=mRNA_H-paniculata_contig630.14077.1|Name=mRNA_H-paniculata_contig630.14077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7526bp|location=Sequence derived from alignment at H-paniculata_contig630:1941..9466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGGAGAGGCATCACAACTCTGGAGCGAACTACTGCGGACAAGTAGGG
GTGAGATGAAAATTCTGCCAACCCCCTATGTTTCCATTGTGTTTCGTACC
CCCCTTTCTCTTCTCGGAATAAAAAAAACTGCTGTACATCCAGATAACTT
CTGACTTGAAGGTCAGACAGCTGACACTGCTGACATGGCTGACTGTATCG
AGGTGTTCTGTTGTAGTACGGCAGTTGGTTTGTGGCTACCCCGTTATAGT
CGTATATTTCCACCATAGCCATCTACTGCGCGCTGCTGCCCTCCAATGCA
AATGGTGCTAGACCAAAGACATCGGAGAAGGCACCTGAAAAAACGCTTCT
TTAGAGACGAACTGTAACTAATATTGAACGTAGAGTAGGCTGAACCGTAA
CAGGATGAACAGGACAACAATGGCTATCGTAATGTACATCTACTCTATAT
AATTTCATTATTTAGAAGGGCGATACATATCATGAAGTACGGTACAAGTT
AAACATATTTTATCCGCCCTTTTGTACAATAACTTTTTTCGAAGATGTAT
AAACTTGCGCAATACGCAACCGTCCGCTTGTAGCATTTTTAACAGGGCTA
CCTTGTCGTGGTTGAAAAAAGACGTGTTATATACATAGGATATGGAAAAC
AAGACATTTCCACTGTACTCTATTCTACTGTTGACGTTTGAGCCCCAGGT
ACTCCAGCACTGGCCGCACATCAAATGAACGCTCAAACTATGCGCATAGC
ATTGAAACCTAGGTGCGCCGGAGGCTGTTTCAAGACAAAAGACGATTTTG
ACAGTAACGGCGAGCATGGCAGTCATTATACGCAGAACCATATCAACTTC
CTGTTTGCCGTGTGTGCTGTCTGTACTGGACTAACTGTCTGAACAGTGAC
GGCACTCTATCCCTGTGATTGCGTTGCAGAGAGTGCTTTTCCTCGGTTTT
TCAGGTGGCTATGAAGAGCTGACACCCCACACGAACACTCTGATTTCCTT
GCGTGTCGCTGTCGTAAAGGTGCCGTAGAGAGTTACAGAAAATTGGCCAG
TTTCGCTAGCACCATGAGTCGAGACCCCTATAGGGTATTGGGGGTGCCGT
ACGACGCCAGGCAGGAAGATATTCGTTCCGCGTACTTGCGATTGGCGAAA
CGGCACCATCCCGACTTGAACAAAACATGCGGGAATGCTGATCAGTTCAA
GGCGATTAATTTCGCGTGGGAGGTATGTGTTGGACGCTGGGGTGGGTGGT
GAGGTGGATGGCTTAAGTTCTGGTCACTGAGGGGAAATATTGTGGACGTG
AGAGAGCCCGAGACGTTACCCATCAACATAGATTGTCTGTACCGCGCTCA
CCAACTATCGGAACCATGTACAAGAGAAGTGTGGACTCTCCAATAACAAT
GATCATGTTGGTCGATGAGCGCTCTTGTAGGACCCCCGGCGTCATAGTTG
TCAGGGGTCGACTTCAGTGAACGAGTGTAACGTACAAAAGTAGGGTCAAT
AGCCGAAAGGACATGGTCCTTGTACTCTGCACCTCCTCGTACCTCTACAT
TTCCCCAATTCTACCTCATAGCATGCTTTCAAGGGGGTTAATCACGCGGG
TGCATAGAGACGAGAGAAAATGGAGCTCGGCGTGTTCGTAAGACGCTGTG
CTGTATAGCCTAGCTGATACTGATTGGACATTCCGTCCAACCTATCCATG
CGCAGCGAGCGTACACATATATGGGGATGACTACTTTCTGAGTACCGCGA
AAACAGTTGTGCTGTTGATGTAAGCGCGGTCTATCACGGCGTGTTTTTCC
TTTTTTTTCGTTAGACTTTGGGAAACAAGTCCAAGCGGGCCATGTATGAT
GCGAGTGTGGGGGACATGTCGTCGTTTCGAACGAGAGCACGCCAAGGTCC
AGCCAGCGCATCGTCCGCGCGAGGACGGAGCTGGGGACCGAGCTACGGTG
AGAACTTGGTCGCTGTGTTTTTTGTGTACCTATGACTTGATGCCTGGGAT
ATTGGGAAATATCTACCGTTACTACAAGTTTGGGTTTTGTACTCAGGCTT
GGAACTTCATTTCAAGGGTTTTGTTGAGTCGATTGTTTTCTTGATTGCGG
CTGTTCCGTCGAGTTACTATTGCTGTCCACCATTGCTGCCAACATGTCCC
ATGAGCGTTTCCGCGAACGTGGGCACCTACGGGAAGACAAGAGGTTTTTT
TGCGAACAACTGTTGAGGGCTAACTCTCTATTTCCAGGTTGAGCTACTTG
AGCCTCCTGCGAACTGGGATAATGTTGTACCTCTGATTTGAAGAATAGTT
GTCATCGTGTCCACATCTTGGCTTCGACTCATTTGCGCGATTCGTAGTTA
ATTCAACACGTGTGTTTCATAAATTACTTTCAACATGTTTAAAGCCAAAA
TGTATGTAAATATCTAAACAAATATGTATATGTATACATATATATATATA
TATATATATATATATATTTGTTCAGGGAGCCCGCGTGGTACGCCGCCAAT
TCTACGAGTGTGGGGAACCGTGACCCACCCGAAGACTTTGCTCTGGGTTG
TGCCTATCGCCATCGTGGTAAGTCAGTCCAAGTTTCCACACGTTGGAGAA
GGCGTGGTATTGTGGTGGCTTGTACCATCCGTGTATTTTTGTGTTTGTTT
TGGGGGGACTCGAGTAACCGAATTTTGACTCGTGATATTTTCGGGATGAC
TAAAGGCAACTGACTCTTGGGACTTGGGGGAGGATGACTCGAGGAGACGA
GTCATGACTCCTCGTTTGTTTTTAGACGGGTCAAAACGTTGATTCTTCGA
GGCGATTAATAACTCTATCTGCCATCGGGTGCAAGTTTCCAGGTGTATGA
TATGAGAAACGTGCGCTTCATAGTTCGATTTAAAAGAAACAGCGGCACAT
ACGCGTCATCGGCTTTTCACGGAAGTATGTAATTACTACTGGTCGCCTAT
TTTGTTGTCGTTGAGGCGATCTTTTCGTTCGATACGAGTCGCTTCGATAC
GGGTCGTCCGTCGCCTGTGCAAACAACGTTCACCCCAAAGATAGTGTGGT
TACAAACGATTCCAAAGATCGTCAGAGTATATACCAGTCCAGTATATTGG
ATTTGATTAAAAATGGTAACGAGAGAAGGAGGAAGGGACTGCATCGGGAA
GGAATAGCCGATATTTTCGGACCCATCCACTATCAAGTCCATTACCGTAA
CACTCTTTGATATCTCACCCCCGGACGGTATTTTTCCAAACTCCATTTTC
TCGAGAAGCGAAAGAGCCTGCACTGCCGAAACAGCAAGTCTATCGAAAGA
TCTCAACGATATATTTCCAACAATAACGTTATCGGTGTCCTGCGCGCCGT
TACTATCGAGAAAGTCGACTTGGAAAATTAATATCAGGGGGTGCGATATC
CACGGGTATTACGGGATATTGAATCGAGTCCAGTAAACGCACAGTATACT
GGTGCTAGTACGTGTACTTTGACGACCTTCAACCTTCGCACGATTTCGTT
GTTTCTCCGGGTAGATGCTCTCGCAACAGAGACAACGTCCGCCGTCTGTG
ATCGAAAGCTTGCGCAGCGAACCGTTGTACGATCCTTGACTAGTAGCTCT
CCGCCGACCACCAGCACCGAGTTGCATTTTATAAACTCGAGATATCTCGT
TCCGTGGATGCTACAGTACGAGATATATTCAGGAAAAATGCCTATCGCTG
GCTCAATACCGGATATAACCCGGAGAGTTACGTAATGACGACTTCAATGG
TCCTCACGCATCAATACGGTATTGGTAGGATGTTCATCGTTTTGCAGAAT
ATTTTCCATAGTCTGTGTTCGAGTAAATCCTGAAAAACGAACCTTCATGA
GAGTTTAGTGAGCTACTGCGAGCACAGCGAATTCGTGGATCGAGGACAAG
CAAGCACTAGAGTATGACTATGGGCATAGACGTGCTTCCGTCACTGTATT
TAGTTCTAGGGATGAGCCTCTCGACCTCGAAACGGAACACGAGGAACATG
ACAAAACGTTGCCTGCAGACAACTATTGGTTCAGAATCTTGTGCAACTAG
TTGCACAAGATTCTGAACCAGCAGTTTCCTTAGTCACAACTACCAACTAA
CACCAACTAACATAGTTGTCCAGGGTGTGATACATTTTCAATTCGAATGA
ATCCAACTATGAAAGCATTTTGAGCTGAAACAGCGGACAAAGACAAGGGG
ATGTTCAGGATCGATCCGCTGGAGTCGAAGGGCAAAAGCGTAGCTTTACC
GTATTTAGGCGATTTACTCCTGATGTTTCCTCCAAGCACCTCCAAGAGGC
CCATCTATTCTGATAACCGATACCGCGCGCTCTGTCCCCGTATTCGTCAG
GGATTCCTGACCTTCGGTGCAACTGAAAAAGAAGAAACGATCCCCCTCCA
AAAAGTCCGAGCCTGGTATAATCCTGTGTGAGTGCATGAGTTGCTCTTGA
ACATCTCCGCGTTATATTGCTTTCTTTGGGATAGGAAATGGATTCATCCC
TGTGTTTTTTTTCCTGCTTCACGACGGTGGTCTAATAAATTTTGTCTGTT
TTTGATGGGATATTTACGTCGCTCCAGTAAGAACATGTTCATTGTTTTTC
TTCGAGATCCTCACATTGGACTGCAAAAGAAATTGTGGTCCCGATGGTCA
AGGTGGAAGGAGGGTGACTGAGAAAACAACAAGGACTTTCTTTTTACTTT
TCGATCTGATATTATTGTATGTATAACGGTTCCAGGGTTTCAACCAGGCG
TTTGTTTTCAAAGTAGAGGCTTGTTTACCGTGAGGTTTGGCATGGCTATT
CCACCGAACAAGCTTGTAGAATGTTTTGTGCGGAGCCTCAAGAAGCCAAT
CGTACAGGGTGAGAGAGTAATATGTATGAAGGAGATACCAACTTGAGGAG
AACCGGAAGAGTCGATTCACAATAGATAGTTGCAATATTGTCTAGCCGAC
GTTCTAGCTTGTTGAGCTTTTTAAGACGAGTGAAGATCTTAACTCAGCAC
GTAAATAAAAATACCTTTGATTCGTTTTTTTTCATCAAGATTTCATTGAT
GTTCAATTCATGTCTTGCTCCATTTCCTTGCACCGCGCTTGCAATCGCCT
CATCTGTTAAAACCCCGCGTATTGCGATGAGACAGCACCATGCGATGGGA
GACTCCAGCTCCTTGGGATCCACACTTCCGAAAATACGAACATCTCGTCC
AGAAGGTATGATGAATGCTTCGCTGTCGCTCGGTTGTAATTTTTAACGCT
TTCAGCATCACAGGGATGGCCCCTTCTATACTTGGCAGCTGTTGGTATAT
AACACTCGAATAACAGAAAAATCGTCAACCATGTGAAGAAAAATGATCAC
ATCGCACAAACAGAACTGATGATACATCGTAGATTTACTAGTAGTATTAA
CACAGTTCCAATCGCATGCGCGGAGGAACCGCACACGAACGCGACGATTT
GAGGGTAATTCGGCGTTATCCCGTCAGCTCGGCACAAGAGCACAGTACGA
AATATCCACACTATCAATAGTGGTATTCGGCAAGAGCCTTCATGTACACG
GGAGACGGGTTGGAAAACTGTTACAGCGGGGTGAAGCAGGCAAGGGCAGG
GGTTGTGCGGCTTTGCATCAAAGCTTCAAGGTTCATTCATTCATCGACGC
CAATACCCAATATGGGGATAGGCAGGTCCAACACGTCGGGCTGTATTTTT
TTGTATACATATATCTTCGAGCTGATCATTCCTTGGTATTAGTGCGGCGA
GCTGCAACACTTGCGCCCTGCCAGTGCAGATGTAGGTCTATGGGCGCCCT
GCCAACGCACACTATTACGGCGGAACATATTAATCAGGAGCACTTTTTTT
GTTTTTTCGGAAACTGAATTTTGTTTTTCCCCGTTGGTGTACAGATTTTC
GCTTCTAGCTGAAAACAAAAACACGCTCTAAAAACACTTGCACAGGTATG
CAGCAACCGAGTGGTGCATATCGTATTGCATGAGTTACACCTCAAAATGT
CAATTTTCTAATTTGCTCTTGATTATTATGTTCCTCCGTAATAGGATTTA
CCGTTTGAGGTTTTAGGTCAGCCAGGGTTAGTGGGACGTGTGTGGAGATC
CGCATATGGAAAAAGGTGCCCAATGCGGTCAAAAGTCAAATGCGTCGGGT
TGGGGTTGCGGGAGGGAAGGGGATATACGCTTTCACGTATAGTCGACCTT
GGTTTCTCGCGCATGTGTTTGTGTGAAATGCCAACTTGCGTTTTCGACCT
GTTCCGGGTTTTACGATGCCACACTTCCTTGTCAGCACGTTGTTTCCGGT
ATGTGTGTGTGTGTGTGTGTGTGTGTATATGCTCTCCATGTCAACCCGAT
CGCCCTCAATATTCCGTCTCGATCATATGATTTGCTGTGAAGACACGTGA
TTTATATTTGAAATTAAGTCATATTTCATGTGGCGGTTGTGCAGGTAGCA
CATGTGTTTTGGAGCGCTTAAGTATGGAAGCATCGGTAAAGGTTTTTGCC
TCAGCCTTCCAGGGGTTAAAAAAAAAAAAAAGTGTATTAGAGCTGTGTGC
ATCATCAGCGACCCGACAGTGAGCGTGTTCGTGGGCAAATACTTATTGCC
GCTGGAAGTATATTTGTTGCTTATTGATGTATTCGTACAGTTGTTGATTC
ATTCATGCAGGTTTGAACCGCCGCCCCCCCCCCCCCGCCCCCGATCCCAT
CCATATTTTCCCTTTTCGACATATATCAGGTGGATAAAAACCTGGTGCAT
GTGAGGGAGTCAACCAGACGATCATGAGTGGTTCGGGCTGCGATGCTGAG
ATTTGGGGTGCTCTGCCTTTTGTCGTGGGTGTGGGTGTATATGTGTGCGT
GTATGCTCAGGCGGATAGACAGACCTGCAAGCAGATTTTTATCTGTGTAG
TTTATCGCTCCACCGGCCATGCGTTGACGGCTCGCTGGGAATGACACATT
GCAATCATGACATATCATCGCGACATCGTTTTTATTTGGATTAGTACGTT
GGGTCTTGAGCCGCACAAGCTTTTTTCGCACACAGCTGCATACTTTTCTT
AGCGACGGCAACGCACGCCGCAAGGCGGAGCATAGTGAGCTACGCCAACG
TCGGGTGTCCGAGGGAGTGCTCATTAGAGAGGTCAGGATCAGGTAGCAGA
TGTGATGCAGGCGGCGTCTCTTTTTTATTTGGCGGACCCTGAGCTTGATC
GGTTATACTTGTTTGCGCTACAAGTAAATCCTTCCCTTCACCAAGCCATC
GCACTCGTTGCACTGTTACGGGTATAATCGGGACTTGTGCAGAACCACTG
TTCCTCGTACGTATCTTCGATAAAAAGTTTAGTAGTTGTGTACTAATTTT
GATGGATGTAAACTGTGACGGTTAAAGAGCCTTGCGATGATGCACACACG
TCTAATTTTTTTCTTTTCCTATCGCTGCCGCTTATCGTGCGCCATTGCGC
TGCAAGTATATCGCTTTCAGTTGGGTTGAGGTGGGCGACGTGGCAGCGAG
GTTTACTCTGACATCTACAGCACGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig630:1941..9466+

>mRNA_H-paniculata_contig630.14077.1 ID=mRNA_H-paniculata_contig630.14077.1|Name=mRNA_H-paniculata_contig630.14077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig630:1941..9466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGAGACCCCTATAGGGTATTGGGGGTGCCGTACGACGCCAGGCA
GGAAGATATTCGTTCCGCGTACTTGCGATTGGCGAAACGGCACCATCCCG
ACTTGAACAAAACATGCGGGAATGCTGATCAGTTCAAGGCGATTAATTTC
GCGTGGGAGATGAGTCGAGACCCCTATAGGGTATTGGGGGTGCCGTACGA
CGCCAGGCAGGAAGATATTCGTTCCGCGTACTTGCGATTGGCGAAACGGC
ACCATCCCGACTTGAACAAAACATGCGGGAATGCTGATCAGTTCAAGGCG
ATTAATTTCGCGTGGGAGACTTTGGGAAACAAGTCCAAGCGGGCCATGTA
TGATGCGAGTGTGGGGGACATGTCGTCGTTTCGAACGAGAGCACGCCAAG
GTCCAGCCAGCGCATCGTCCGCGCGAGGACGGAGCTGGGGACCGAGCTAC
GACTTTGGGAAACAAGTCCAAGCGGGCCATGTATGATGCGAGTGTGGGGG
ACATGTCGTCGTTTCGAACGAGAGCACGCCAAGGTCCAGCCAGCGCATCG
TCCGCGCGAGGACGGAGCTGGGGACCGAGCTACGGGAGCCCGCGTGGTAC
GCCGCCAATTCTACGAGTGTGGGGAACCGTGACCCACCCGAAGACTTTGC
TCTGGGTTGTGCCTATCGCCATCGTGGGAGCCCGCGTGGTACGCCGCCAA
TTCTACGAGTGTGGGGAACCGTGACCCACCCGAAGACTTTGCTCTGGGTT
GTGCCTATCGCCATCGTGGGATTCCTGACCTTCGGTGCAACTGAAAAAGA
AGAAACGATCCCCCTCCAAAAAGTCCGAGCCTGGTATAATCCTGTGGATT
CCTGACCTTCGGTGCAACTGAAAAAGAAGAAACGATCCCCCTCCAAAAAG
TCCGAGCCTGGTATAATCCTGTCACCATGCGATGGGAGACTCCAGCTCCT
TGGGATCCACACTTCCGAAAATACGAACATCTCGTCCAGAAGCACCATGC
GATGGGAGACTCCAGCTCCTTGGGATCCACACTTCCGAAAATACGAACAT
CTCGTCCAGAAGGTGGATAAAAACCTGGTGCATGTGAGGGAGTCAACCAG
ACGATCATGAGTGGATAAAAACCTGGTGCATGTGAGGGAGTCAACCAGAC
GATCATGA
back to top