mRNA_H-paniculata_contig62936.14063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62936.14063.1
Unique NamemRNA_H-paniculata_contig62936.14063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.810e-33
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            MTFFSLFSILLNILLI IILIRSPNEQSLQENL PFKLFESSRRAETSIDKL+QILT+LYF +AICYVI SYF
Sbjct:    1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.590e-29
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            N  T FS+ SILLNILLISIILIRSPNEQSLQENL PFK FESS RAE SIDKLIQILT+ YFI+A+ Y+IQSYF
Sbjct:    2 NYTTIFSIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.020e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            N MT F + SILLNILLI +IL+RSPNEQSLQENL PFKLFESS RAE SIDK IQ+LTVLYF++A+ YVIQSYF
Sbjct:    2 NYMTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.120e-27
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            N MT F + SI+LNILLI IILIRSPNEQSLQENL PF+LFESS RAE SIDK+IQ+LT+ YF++A+ YVIQSYF
Sbjct:    2 NSMTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI)

HSP 1 Score: 96.3 bits (238), Expect = 1.380e-24
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   19 FSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            FS+ SI+LN  L+ IIL+RSPNEQSLQENL PFKLFESS RAE SIDKLIQILT+LYF++A+ Y IQ YF
Sbjct:    7 FSILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.780e-24
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            N    FSL SI  NILLI +IL+RSPNEQSLQENL P KLFESS +AE SIDKLIQIL + YF++A+CY IQSYF
Sbjct:    2 NYKDIFSLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.000e-21
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSY 225
            M FFS+ SI++N  L+ IILIRSPNEQSLQENL PFK+FESS +AE SID LI+ILT++YF +A+ Y I++Y
Sbjct:    1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.260e-21
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
             C  F S+ SI +NI+LI IILIRSPNEQSLQENL PFK FESS +AE  ID LIQIL VLYF +A+ Y I++YF
Sbjct:    2 TCTKFLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.140e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            M  F + + +LNI+LI +IL+RSPNEQSLQENL PF LFESS RAE SID+LI+ LT +YF +A+ Y IQ YF
Sbjct:    4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76          
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0FBW8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FBW8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.210e-19
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
            N M  F + SI+LNI      +IRSPNEQSLQENL PF+LFESS +AE SIDK I++LT LYFI+ I Y +Q YF
Sbjct:    2 NFMNVFGIISIVLNIXXXXXXIIRSPNEQSLQENLAPFQLFESSTKAEESIDKFIRLLTALYFILGIFYSLQKYF 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6B7EUY5_9PHAE1.810e-3390.41Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
D1J765_ECTSI2.590e-2980.00Uncharacterized protein ycf47 n=2 Tax=Ectocarpus s... [more]
A0A5A4MI59_9PHAE3.020e-2877.33Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A344PF79_9PHAE7.120e-2774.67Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A0R6LUQ0_UNDPI1.380e-2474.29Probable protein-export membrane protein SecG n=23... [more]
A0A8F0F7T2_9PHAE2.780e-2470.67Probable protein-export membrane protein SecG n=2 ... [more]
A0A141BSB1_9PHAE1.000e-2165.28Probable protein-export membrane protein SecG n=14... [more]
A0A2R4QPS9_9PHAE6.260e-2166.67Hypothetical chloroplast protein ycf47 n=3 Tax=Fuc... [more]
A0A8F0F9M4_9PHAE5.140e-2063.01Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A8F0FBW8_9PHAE4.210e-1961.33Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62936contigH-paniculata_contig62936:521..751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size231
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.6670237-CDS-H-paniculata_contig62936:520..7421622930720.6670237-CDS-H-paniculata_contig62936:520..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62936 521..742 -
1691481422.0159051-CDS-H-paniculata_contig62936:520..7421691481422.0159051-CDS-H-paniculata_contig62936:520..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62936 521..742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.7130811-UTR-H-paniculata_contig62936:742..7511622930720.7130811-UTR-H-paniculata_contig62936:742..751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62936 743..751 -
1691481422.0289898-UTR-H-paniculata_contig62936:742..7511691481422.0289898-UTR-H-paniculata_contig62936:742..751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62936 743..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62936.14063.1prot_H-paniculata_contig62936.14063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62936 521..742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62936.14063.1

>prot_H-paniculata_contig62936.14063.1 ID=prot_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSID
KLIQILTVLYFIVAICYVIQSYF*
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mRNA from alignment at H-paniculata_contig62936:521..751-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62936.14063.1 ID=mRNA_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig62936:521..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAATTGTATGACCTTTTTTAGTTTATTTTCGATATTACTTAATATTTT ATTAATTTCAATCATATTAATCAGGAGCCCAAATGAGCAGAGTTTACAAG AAAATTTAACTCCGTTTAAACTTTTTGAAAGTTCTAGGCGAGCAGAAACA TCGATTGACAAATTAATCCAAATCTTAACAGTTTTATATTTCATAGTAGC TATATGTTATGTTATTCAAAGCTATTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig62936:521..751-

>mRNA_H-paniculata_contig62936.14063.1 ID=mRNA_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig62936:521..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTTTTTAGTTTATTTTCGATATTACTTAATATTTTATTAATTTC
AATCATATTAATCAGGAGCCCAAATGAGCAGAGTTTACAAGAAAATTTAA
CTCCGTTTAAACTTTTTGAAAGTTCTAGGCGAGCAGAAACATCGATTGAC
AAATTAATCCAAATCTTAACAGTTTTATATTTCATAGTAGCTATATGTTA
TGTTATTCAAAGCTATTTTTAAATGACCTTTTTTAGTTTATTTTCGATAT
TACTTAATATTTTATTAATTTCAATCATATTAATCAGGAGCCCAAATGAG
CAGAGTTTACAAGAAAATTTAACTCCGTTTAAACTTTTTGAAAGTTCTAG
GCGAGCAGAAACATCGATTGACAAATTAATCCAAATCTTAACAGTTTTAT
ATTTCATAGTAGCTATATGTTATGTTATTCAAAGCTATTTTTAA
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