prot_H-paniculata_contig62922.14060.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62922.14060.1
Unique Nameprot_H-paniculata_contig62922.14060.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length152
Homology
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.110e-25
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 0
Query:    6 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 150
            + DAS+         RSSTG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  EL     +  + SD   A++ A NS +  RSK I+ R+  L+  + +  ++   V S +QLADILTKH ERV F +LR+ +   G
Sbjct:  552 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.270e-25
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 0
Query:    6 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 150
            + DAS+         RSSTG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  EL     +  + SD   A++ A NS +  RSK I+ R+  L+  + +  ++   V S +QLADILTKH ERV F +LR+ +   G
Sbjct:  369 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.110e-24
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    6 FSDASYCT----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTK 132
            +SDASY +    +S TG+M F A  L++FSSR+Q+I A S++E E   + + AK G+Y   +  EL   QL   ++ +D R AL+L +N  +S+RS+HI++R+ AL+ W+   ++  DHVPS+  L+DILTK
Sbjct:  732 YSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978)

HSP 1 Score: 96.7 bits (239), Expect = 1.260e-21
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 0
Query:    2 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            + +G+ D+        ++S++GTMFF  + LV++    QK+ A S+ EAE IA A+ A QG++L  +  EL   +++  E++ D + AL L  N  +  RSKHI I++  ++D +    +  DH+ +TDQLADI+TK   +  F ++R KI
Sbjct:   95 RYIGYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.740e-21
Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    2 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            +L  F+D+S+       RS+TG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+  +   S  + SD   AL +A+N+ +SSR+KHIA+RF  L++  + +++   H PS   LADI TKH  +  FA +   I
Sbjct:  142 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0014934C02 (secreted RxLR effector protein 161-like n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014934C02)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-21
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 0
Query:    3 LLGFSDASY-----CTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            LLG+SDA         +S+TG ++FF +  V + S+ QK+ A S+ EAE IA AT A QG++L  +  EL+  Q  S +++ D + A+ L+ N  +  RSKHI +RF  ++D I +  L  +HV + +QLADIL K   R  F +LR ++
Sbjct:   86 LLGYSDADMGGDVDTRKSTTGVLYFFGSCAVSWQSQKQKVVALSSYEAEYIAGATAACQGLWLSKLLSELKSEQCKSFKLKMDSQSAIALSKNPVFHERSKHIDVRFHFIRDCIEKGMLDVEHVRTEEQLADILMKLLGRDKFCELRVQL 235          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A392M4U6_9FABA (Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M4U6_9FABA)

HSP 1 Score: 96.7 bits (239), Expect = 1.190e-20
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 0
Query:    2 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNS-CEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSK 145
            KL GFSD+ +C      RS+TG +F F N  + + S+ Q + A S+ EAE IA A  A QGI+L  + ++++++L    ++  +++ A+NLA N     RSKHI  RF  ++D + + +++  H P+ +Q ADILTK  +   F  LR+K
Sbjct:  270 KLEGFSDSDWCGDHVDRRSTTGYIFKFLNAPISWCSKKQPVVALSSCEAEYIAYAFAACQGIWLESLLKDIKIELTEPIQLLVNNKSAINLARNPITHGRSKHIETRFHFIRDQVSKRKIVLSHCPTEEQEADILTKGLKHDRFIGLRNK 419          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A0D3C8Z4_BRAOL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3C8Z4_BRAOL)

HSP 1 Score: 94.7 bits (234), Expect = 1.770e-20
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    2 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            KL+G+SD+S+ T     RS+TG +F F +  + + S+ Q   A S+ EAE +A    AKQ I+L  +  E+   +     +R D++ A+ LA N  +  RSKHI  RF  +++ + R  +  +HVP T+Q ADILTK   ++ F ++R KI
Sbjct:  138 KLIGYSDSSHNTDPDDGRSTTGHLFCFGDTPITWCSQKQDTVALSSCEAEFMAATEAAKQAIWLQDLLSEITGRKAEKTLIRVDNKSAIALAKNPVFHRRSKHIQKRFHFIRECVERDHIDVEHVPGTEQKADILTKALAKIKFKEMREKI 288          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.130e-20
Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    2 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            +L  F+D+S+       RS+TG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+  +   S  + SD   AL +A+N+ +SSR+KHIA+RF  L++  + +++   H PS   LADI TKH  +  FA +   I
Sbjct:  579 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D51427 (secreted RxLR effector protein 161-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51427)

HSP 1 Score: 92.8 bits (229), Expect = 3.090e-20
Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 0
Query:    4 LGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 146
            +G+ D+        ++S+ GTMFF    LV + S  +K+ A S+ EAE IA A+   Q ++L  +  EL   +++  E++ D + AL LA N  +  RSKHI I++  ++D +    +  DH+P+TDQLADILTK   R  F ++R +I
Sbjct:   87 IGYCDSDLAGDVGTSKSTNGTMFFLGGCLVCWKSIKKKVVALSSCEAEYIAAASAVTQALWLSRLLGELLGSKVDVVELKVDSKSALALAKNPVFHGRSKHIRIKYHFIRDCLEDGSIKADHIPTTDQLADILTKSLGRSRFLEMRKRI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE4.110e-2540.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE5.270e-2540.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV56_9PHAE5.110e-2442.42Integrase catalytic domain-containing protein n=1 ... [more]
UPI0019D5A9781.260e-2135.76secreted RxLR effector protein 161-like n=2 Tax=Pa... [more]
A0A6H5KC04_9PHAE2.740e-2135.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI0014934C023.050e-2139.33secreted RxLR effector protein 161-like n=1 Tax=Se... [more]
A0A392M4U6_9FABA1.190e-2037.33Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID... [more]
A0A0D3C8Z4_BRAOL1.770e-2037.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE2.130e-2035.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0019D514273.090e-2036.91secreted RxLR effector protein 161-like n=1 Tax=Pa... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..116
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62922contigH-paniculata_contig62922:415..870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62922.14060.1mRNA_H-paniculata_contig62922.14060.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62922 415..870 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62922.14060.1 ID=prot_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
PKLLGFSDASYCTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIAL
ATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIA
IRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG
K*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like