mRNA_H-paniculata_contig62922.14060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62922.14060.1
Unique NamemRNA_H-paniculata_contig62922.14060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.110e-25
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   16 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 450
            + DAS+         RSSTG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  EL     +  + SD   A++ A NS +  RSK I+ R+  L+  + +  ++   V S +QLADILTKH ERV F +LR+ +   G
Sbjct:  552 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.270e-25
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   16 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 450
            + DAS+         RSSTG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  EL     +  + SD   A++ A NS +  RSK I+ R+  L+  + +  ++   V S +QLADILTKH ERV F +LR+ +   G
Sbjct:  369 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.110e-24
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   16 FSDASYCT----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTK 396
            +SDASY +    +S TG+M F A  L++FSSR+Q+I A S++E E   + + AK G+Y   +  EL   QL   ++ +D R AL+L +N  +S+RS+HI++R+ AL+ W+   ++  DHVPS+  L+DILTK
Sbjct:  732 YSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978)

HSP 1 Score: 96.7 bits (239), Expect = 1.260e-21
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    4 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            + +G+ D+        ++S++GTMFF  + LV++    QK+ A S+ EAE IA A+ A QG++L  +  EL   +++  E++ D + AL L  N  +  RSKHI I++  ++D +    +  DH+ +TDQLADI+TK   +  F ++R KI
Sbjct:   95 RYIGYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.740e-21
Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            +L  F+D+S+       RS+TG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+  +   S  + SD   AL +A+N+ +SSR+KHIA+RF  L++  + +++   H PS   LADI TKH  +  FA +   I
Sbjct:  142 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0014934C02 (secreted RxLR effector protein 161-like n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014934C02)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-21
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    7 LLGFSDASY-----CTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            LLG+SDA         +S+TG ++FF +  V + S+ QK+ A S+ EAE IA AT A QG++L  +  EL+  Q  S +++ D + A+ L+ N  +  RSKHI +RF  ++D I +  L  +HV + +QLADIL K   R  F +LR ++
Sbjct:   86 LLGYSDADMGGDVDTRKSTTGVLYFFGSCAVSWQSQKQKVVALSSYEAEYIAGATAACQGLWLSKLLSELKSEQCKSFKLKMDSQSAIALSKNPVFHERSKHIDVRFHFIRDCIEKGMLDVEHVRTEEQLADILMKLLGRDKFCELRVQL 235          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A392M4U6_9FABA (Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M4U6_9FABA)

HSP 1 Score: 96.7 bits (239), Expect = 1.190e-20
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    4 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNS-CEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSK 435
            KL GFSD+ +C      RS+TG +F F N  + + S+ Q + A S+ EAE IA A  A QGI+L  + ++++++L    ++  +++ A+NLA N     RSKHI  RF  ++D + + +++  H P+ +Q ADILTK  +   F  LR+K
Sbjct:  270 KLEGFSDSDWCGDHVDRRSTTGYIFKFLNAPISWCSKKQPVVALSSCEAEYIAYAFAACQGIWLESLLKDIKIELTEPIQLLVNNKSAINLARNPITHGRSKHIETRFHFIRDQVSKRKIVLSHCPTEEQEADILTKGLKHDRFIGLRNK 419          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A0D3C8Z4_BRAOL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3C8Z4_BRAOL)

HSP 1 Score: 94.7 bits (234), Expect = 1.770e-20
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            KL+G+SD+S+ T     RS+TG +F F +  + + S+ Q   A S+ EAE +A    AKQ I+L  +  E+   +     +R D++ A+ LA N  +  RSKHI  RF  +++ + R  +  +HVP T+Q ADILTK   ++ F ++R KI
Sbjct:  138 KLIGYSDSSHNTDPDDGRSTTGHLFCFGDTPITWCSQKQDTVALSSCEAEFMAATEAAKQAIWLQDLLSEITGRKAEKTLIRVDNKSAIALAKNPVFHRRSKHIQKRFHFIRECVERDHIDVEHVPGTEQKADILTKALAKIKFKEMREKI 288          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.130e-20
Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            +L  F+D+S+       RS+TG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+  +   S  + SD   AL +A+N+ +SSR+KHIA+RF  L++  + +++   H PS   LADI TKH  +  FA +   I
Sbjct:  579 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D51427 (secreted RxLR effector protein 161-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51427)

HSP 1 Score: 92.8 bits (229), Expect = 3.090e-20
Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   10 LGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
            +G+ D+        ++S+ GTMFF    LV + S  +K+ A S+ EAE IA A+   Q ++L  +  EL   +++  E++ D + AL LA N  +  RSKHI I++  ++D +    +  DH+P+TDQLADILTK   R  F ++R +I
Sbjct:   87 IGYCDSDLAGDVGTSKSTNGTMFFLGGCLVCWKSIKKKVVALSSCEAEYIAAASAVTQALWLSRLLGELLGSKVDVVELKVDSKSALALAKNPVFHGRSKHIRIKYHFIRDCLEDGSIKADHIPTTDQLADILTKSLGRSRFLEMRKRI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE4.110e-2540.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE5.270e-2540.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV56_9PHAE5.110e-2442.42Integrase catalytic domain-containing protein n=1 ... [more]
UPI0019D5A9781.260e-2135.76secreted RxLR effector protein 161-like n=2 Tax=Pa... [more]
A0A6H5KC04_9PHAE2.740e-2135.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI0014934C023.050e-2139.33secreted RxLR effector protein 161-like n=1 Tax=Se... [more]
A0A392M4U6_9FABA1.190e-2037.33Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID... [more]
A0A0D3C8Z4_BRAOL1.770e-2037.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE2.130e-2035.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0019D514273.090e-2036.91secreted RxLR effector protein 161-like n=1 Tax=Pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62922contigH-paniculata_contig62922:415..870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue2e-18
Seed eggNOG ortholog4538.ORGLA12G0180100.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.486396-CDS-H-paniculata_contig62922:414..8701622930720.486396-CDS-H-paniculata_contig62922:414..870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62922 415..870 -
1691481421.9715543-CDS-H-paniculata_contig62922:414..8701691481421.9715543-CDS-H-paniculata_contig62922:414..870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62922 415..870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62922.14060.1prot_H-paniculata_contig62922.14060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62922 415..870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62922.14060.1

>prot_H-paniculata_contig62922.14060.1 ID=prot_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
PKLLGFSDASYCTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIAL
ATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIA
IRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG
K*
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mRNA from alignment at H-paniculata_contig62922:415..870-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62922.14060.1 ID=mRNA_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig62922:415..870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAACTACTCGGCTTTTCTGATGCATCATACTGCACACGGTCTTCAAC AGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCGAC TACAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACTT GCTACATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGCAGGGAGCT TAGACTTCAACTGAATAGCTGCGAGGTTCGAAGTGACCACCGAAGAGCTC TTAATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCGCC ATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGATATCAGCTAATCAC CGACCATGTACCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACACT GCGAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTGGA AAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig62922:415..870-

>mRNA_H-paniculata_contig62922.14060.1 ID=mRNA_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig62922:415..870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAACTACTCGGCTTTTCTGATGCATCATACTGCACACGGTCTTCAAC
AGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCGAC
TACAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACTT
GCTACATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGCAGGGAGCT
TAGACTTCAACTGAATAGCTGCGAGGTTCGAAGTGACCACCGAAGAGCTC
TTAATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCGCC
ATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGATATCAGCTAATCAC
CGACCATGTACCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACACT
GCGAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTGGA
AAATGACCGAAACTACTCGGCTTTTCTGATGCATCATACTGCACACGGTC
TTCAACAGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCAT
CTCGACTACAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATC
GCACTTGCTACATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGCAG
GGAGCTTAGACTTCAACTGAATAGCTGCGAGGTTCGAAGTGACCACCGAA
GAGCTCTTAATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACAC
ATCGCCATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGATATCAGCT
AATCACCGACCATGTACCAAGTACTGATCAGCTAGCTGACATTCTCACCA
AACACTGCGAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACT
TTTGGAAAATGA
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