mRNA_H-paniculata_contig62922.14060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 110 bits (274), Expect = 4.110e-25 Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 16 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 450
+ DAS+ RSSTG +F A G+V +S LQK+TA S+ AE+IA+AT A++ IYL G+ EL + + SD A++ A NS + RSK I+ R+ L+ + + ++ V S +QLADILTKH ERV F +LR+ + G
Sbjct: 552 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 109 bits (272), Expect = 5.270e-25 Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 16 FSDASYC-------TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 450
+ DAS+ RSSTG +F A G+V +S LQK+TA S+ AE+IA+AT A++ IYL G+ EL + + SD A++ A NS + RSK I+ R+ L+ + + ++ V S +QLADILTKH ERV F +LR+ + G
Sbjct: 369 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.110e-24 Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 16 FSDASYCT----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTK 396
+SDASY + +S TG+M F A L++FSSR+Q+I A S++E E + + AK G+Y + EL QL ++ +D R AL+L +N +S+RS+HI++R+ AL+ W+ ++ DHVPS+ L+DILTK
Sbjct: 732 YSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978) HSP 1 Score: 96.7 bits (239), Expect = 1.260e-21 Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 1
Query: 4 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
+ +G+ D+ ++S++GTMFF + LV++ QK+ A S+ EAE IA A+ A QG++L + EL +++ E++ D + AL L N + RSKHI I++ ++D + + DH+ +TDQLADI+TK + F ++R KI
Sbjct: 95 RYIGYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.740e-21 Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
+L F+D+S+ RS+TG +FF GL+ + ++ Q + A +T EAEL AL+ A++ +Y+ E+ + S + SD AL +A+N+ +SSR+KHIA+RF L++ + +++ H PS LADI TKH + FA + I
Sbjct: 142 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0014934C02 (secreted RxLR effector protein 161-like n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014934C02) HSP 1 Score: 95.5 bits (236), Expect = 3.050e-21 Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 7 LLGFSDASY-----CTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRL-QLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
LLG+SDA +S+TG ++FF + V + S+ QK+ A S+ EAE IA AT A QG++L + EL+ Q S +++ D + A+ L+ N + RSKHI +RF ++D I + L +HV + +QLADIL K R F +LR ++
Sbjct: 86 LLGYSDADMGGDVDTRKSTTGVLYFFGSCAVSWQSQKQKVVALSSYEAEYIAGATAACQGLWLSKLLSELKSEQCKSFKLKMDSQSAIALSKNPVFHERSKHIDVRFHFIRDCIEKGMLDVEHVRTEEQLADILMKLLGRDKFCELRVQL 235
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A392M4U6_9FABA (Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M4U6_9FABA) HSP 1 Score: 96.7 bits (239), Expect = 1.190e-20 Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 4 KLLGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQLNS-CEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSK 435
KL GFSD+ +C RS+TG +F F N + + S+ Q + A S+ EAE IA A A QGI+L + ++++++L ++ +++ A+NLA N RSKHI RF ++D + + +++ H P+ +Q ADILTK + F LR+K
Sbjct: 270 KLEGFSDSDWCGDHVDRRSTTGYIFKFLNAPISWCSKKQPVVALSSCEAEYIAYAFAACQGIWLESLLKDIKIELTEPIQLLVNNKSAINLARNPITHGRSKHIETRFHFIRDQVSKRKIVLSHCPTEEQEADILTKGLKHDRFIGLRNK 419
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A0D3C8Z4_BRAOL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3C8Z4_BRAOL) HSP 1 Score: 94.7 bits (234), Expect = 1.770e-20 Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
KL+G+SD+S+ T RS+TG +F F + + + S+ Q A S+ EAE +A AKQ I+L + E+ + +R D++ A+ LA N + RSKHI RF +++ + R + +HVP T+Q ADILTK ++ F ++R KI
Sbjct: 138 KLIGYSDSSHNTDPDDGRSTTGHLFCFGDTPITWCSQKQDTVALSSCEAEFMAATEAAKQAIWLQDLLSEITGRKAEKTLIRVDNKSAIALAKNPVFHRRSKHIQKRFHFIRECVERDHIDVEHVPGTEQKADILTKALAKIKFKEMREKI 288
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.130e-20 Identity = 54/151 (35.76%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 4 KLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELRLQ-LNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
+L F+D+S+ RS+TG +FF GL+ + ++ Q + A +T EAEL AL+ A++ +Y+ E+ + S + SD AL +A+N+ +SSR+KHIA+RF L++ + +++ H PS LADI TKH + FA + I
Sbjct: 579 RLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Match: UPI0019D51427 (secreted RxLR effector protein 161-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51427) HSP 1 Score: 92.8 bits (229), Expect = 3.090e-20 Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 10 LGFSDASYC-----TRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELR-LQLNSCEVRSDHRRALNLAANSNYSSRSKHIAIRFAALKDWIRRYQLITDHVPSTDQLADILTKHCERVVFAQLRSKI 438
+G+ D+ ++S+ GTMFF LV + S +K+ A S+ EAE IA A+ Q ++L + EL +++ E++ D + AL LA N + RSKHI I++ ++D + + DH+P+TDQLADILTK R F ++R +I
Sbjct: 87 IGYCDSDLAGDVGTSKSTNGTMFFLGGCLVCWKSIKKKVVALSSCEAEYIAAASAVTQALWLSRLLGELLGSKVDVVELKVDSKSALALAKNPVFHGRSKHIRIKYHFIRDCLEDGSIKADHIPTTDQLADILTKSLGRSRFLEMRKRI 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62922.14060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62922.14060.1 >prot_H-paniculata_contig62922.14060.1 ID=prot_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp PKLLGFSDASYCTRSSTGTMFFFANGLVHFSSRLQKITATSTTEAELIALback to top mRNA from alignment at H-paniculata_contig62922:415..870- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62922.14060.1 ID=mRNA_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig62922:415..870- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62922:415..870- >mRNA_H-paniculata_contig62922.14060.1 ID=mRNA_H-paniculata_contig62922.14060.1|Name=mRNA_H-paniculata_contig62922.14060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig62922:415..870- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |