prot_H-paniculata_contig6291.14058.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6291.14058.1
Unique Nameprot_H-paniculata_contig6291.14058.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length708
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6291.14058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..141
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 289..462
coord: 601..682
coord: 152..293
coord: 463..595
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 289..336
e-value: 2.7E-12
score: 46.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 570..594
e-value: 5.9E-4
score: 17.8
coord: 643..676
e-value: 1.4E-5
score: 23.0
coord: 291..325
e-value: 4.6E-7
score: 27.6
coord: 466..493
e-value: 1.1E-8
score: 32.8
coord: 326..359
e-value: 8.8E-7
score: 26.7
coord: 396..430
e-value: 7.8E-9
score: 33.2
coord: 361..395
e-value: 2.2E-4
score: 19.2
coord: 536..564
e-value: 7.4E-5
score: 20.7
coord: 257..286
e-value: 2.3E-4
score: 19.1
coord: 607..640
e-value: 6.7E-4
score: 17.7
coord: 502..534
e-value: 1.9E-7
score: 28.8
coord: 152..184
e-value: 8.1E-5
score: 20.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 643..672
e-value: 8.6E-5
score: 22.5
coord: 607..636
e-value: 0.084
score: 13.2
coord: 257..285
e-value: 1.6E-4
score: 21.7
coord: 570..594
e-value: 9.0E-4
score: 19.3
coord: 222..251
e-value: 0.27
score: 11.6
coord: 152..181
e-value: 0.02
score: 15.1
coord: 537..563
e-value: 0.0023
score: 18.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 289..323
score: 12.112
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 640..674
score: 10.764
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 533..567
score: 9.832
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 9.427
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 463..497
score: 12.145
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 429..459
score: 8.079
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 11.192
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..214
score: 6.752
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..253
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 568..602
score: 8.857
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 359..393
score: 11.005
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..428
score: 12.781
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 605..639
score: 9.58
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 498..532
score: 10.852
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 9.602
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 117..222
e-value: 5.9E-12
score: 47.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 223..334
e-value: 8.5E-30
score: 105.4
coord: 439..543
e-value: 1.7E-28
score: 101.2
coord: 335..438
e-value: 5.5E-32
score: 112.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 544..684
e-value: 7.1E-35
score: 122.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 398..614
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 363..527
e-value: 5.9E-11
score: 42.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6291contigH-paniculata_contig6291:2171..10132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6291.14058.1mRNA_H-paniculata_contig6291.14058.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6291 2112..10924 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6291.14058.1 ID=prot_H-paniculata_contig6291.14058.1|Name=mRNA_H-paniculata_contig6291.14058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=708bp
MVIPEYRAGVSFVLPTAPFSHPFFQYAPAFTAVLRVRARAGWYTATGASL
NRQRMSSVPTTAVATMESSDIDLKSRGAALAQERYKQRLAYRNKLEGDGP
ARKQAVDQMQGFISRLKLMGLDDWKQALEELDEALASAAASGFIKDGLIR
RAYGSVLGVMRQSGRWRESLDLLDRMRTDGIEPDHFCMTAAIQACGRANR
WVEGAEVLRTMLTDMKPIPEICYHLAVRACTQAGAWKQSLELLGEMRTDG
VPIGQKTYSTVIRACGQARRFAEVQELFEAMRGSGEDLDHITYSSVIAAF
AHAGHWEPALNVFDEMKREGMEIDVITYTSAIRACGKGRQWRKGLELFEE
LKASGIALNTVAYSTTIGACGACGEWEKAIEIFEGMPGGGVHPDVVSYNE
VISACARARRWEEAVEFMKQMTEDSISPDAILYDTVIVACSRGGNWAKAL
EVLAEAQAHGKGDEAAYNSVISALGKAGRWEKAIEVFDQMPQFRVPRTEY
ACIAILSALAKNGRWEKTLEMFQKMREDGVPLDEKIYAAVIKACGKGGQY
EKALGILEGMRQMELPVTRVSYNAVITALGDCGQWERALEFYREAIAPRS
EIEASVVTYTAALNACVRCEEWGAALEVLDALRASGLELDMIAYSSAITA
YRNGGQWEKAVELIDEMRGAGIPMDVITYRAMVGPKGGQLTPELKEKARA
VEEKGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long