mRNA_H-paniculata_contig62858.14049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62858.14049.1
Unique NamemRNA_H-paniculata_contig62858.14049.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.800e-34
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVALLIVFIGALSG DPPLNPLMMLWVNLIMDTMGALALGTEAPT+ LLDRRPY+R+A LIS PM RNI+VQSTFQ+
Sbjct:  823 VVALLIVFIGALSGKDPPLNPLMMLWVNLIMDTMGALALGTEAPTLALLDRRPYKRNAPLISRPMFRNIMVQSTFQL 899          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S2XZI8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZI8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.380e-30
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVALL+VFIG+++G DPPLN +MMLWVNLIMD++GALALGTE PTMELL+RRPYRR+  LIS PM+RNIL QS FQ+
Sbjct:   64 VVALLLVFIGSVTGYDPPLNAVMMLWVNLIMDSLGALALGTEMPTMELLERRPYRRNCSLISKPMMRNILSQSAFQL 140          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7R9WQ07_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ07_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.040e-29
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ AL+G  PPLN +MMLWVNLIMDTMGALALGTE PT+ELLDRRPYRRDA LIS PM RNI VQ+T+Q+
Sbjct:  158 VVALTITFLSALAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTLELLDRRPYRRDASLISRPMWRNIFVQATYQL 234          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S1E4A1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4A1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.550e-29
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A++G  PPLN +MMLWVNLIMDTMGALALGTE P  ELLDRRPYRRDA LIS PM RNILVQ+T+Q+
Sbjct:   44 VVALTITFLSAIAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPRAELLDRRPYRRDASLISRPMWRNILVQATYQL 120          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7R9Z8X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8X2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.870e-29
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A++G  PPLN +MMLWVNLIMDTMGALALGTE PT ELLDRRPY+RDA LI+ PM RNILVQ+ +Q+
Sbjct:   16 VVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTRELLDRRPYKRDASLINRPMWRNILVQAAYQL 92          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A812WBN1_SYMMI (ATP2B1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBN1_SYMMI)

HSP 1 Score: 117 bits (292), Expect = 6.120e-29
Identity = 56/77 (72.73%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVALL+VFIGA +G +PPLN +MMLWVNLIMDT+GALALGTE PT+++LDR+PY+R+A L+S PMLRNIL QS FQ+
Sbjct:  411 VVALLLVFIGACAGFEPPLNAVMMLWVNLIMDTLGALALGTELPTLKVLDRKPYKREAGLVSRPMLRNILAQSAFQL 487          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S1CYI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYI6_CYCTE)

HSP 1 Score: 114 bits (286), Expect = 1.470e-28
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A++G  PPLN +MMLWVNLIMDTMGALALGTE PT ELLDRRPY+RDA LIS PM RNILVQ+T+Q+
Sbjct:  213 VVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTGELLDRRPYKRDASLISRPMWRNILVQATYQL 289          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S2H9Q5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9Q5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.900e-28
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A++G  PPLN +MMLWVNLIMDTMGALALGTE PTM LLDRRPY+RDA LIS PM RNI VQ+T+Q+
Sbjct:  219 VVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTMSLLDRRPYKRDASLISRPMWRNIFVQATYQL 295          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S1YUU7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YUU7_TRICV)

HSP 1 Score: 114 bits (285), Expect = 6.620e-28
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A++G  PPLN +MMLWVNLIMDTMGALALGTE PT ELLDRRPYRRDA LI+ PM RNILVQ+++Q+
Sbjct:  368 VVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTQELLDRRPYRRDASLINRPMWRNILVQASYQL 444          
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Match: A0A7S0B2T2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B2T2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.170e-27
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLDRRPYRRDARLISNPMLRNILVQSTFQV 231
            VVAL I F+ A+ G  PPLN +MMLWVNLIMDTMGALALGTE PT +LLDRRPY+RDA LI+ PM RNILVQ+T+Q+
Sbjct:  164 VVALTITFLSAVCGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTNDLLDRRPYKRDASLINRPMWRNILVQATYQL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62858.14049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE4.800e-3487.01Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A7S2XZI8_9STRA2.380e-3075.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9WQ07_9STRA1.040e-2976.62Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1E4A1_9STRA1.550e-2975.32Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7R9Z8X2_9STRA3.870e-2972.73Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A812WBN1_SYMMI6.120e-2972.73ATP2B1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S1CYI6_CYCTE1.470e-2875.32Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2H9Q5_9STRA2.900e-2874.03Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YUU7_TRICV6.620e-2874.03Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0B2T2_9STRA1.170e-2772.73Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62858contigH-paniculata_contig62858:203..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D7G3Y5
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.7510097-CDS-H-paniculata_contig62858:202..4331622930718.7510097-CDS-H-paniculata_contig62858:202..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62858 203..433 +
1691481421.1344376-CDS-H-paniculata_contig62858:202..4331691481421.1344376-CDS-H-paniculata_contig62858:202..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62858 203..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62858.14049.1prot_H-paniculata_contig62858.14049.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62858 203..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62858.14049.1

>prot_H-paniculata_contig62858.14049.1 ID=prot_H-paniculata_contig62858.14049.1|Name=mRNA_H-paniculata_contig62858.14049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VVALLIVFIGALSGMDPPLNPLMMLWVNLIMDTMGALALGTEAPTMELLD
RRPYRRDARLISNPMLRNILVQSTFQV
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mRNA from alignment at H-paniculata_contig62858:203..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62858.14049.1 ID=mRNA_H-paniculata_contig62858.14049.1|Name=mRNA_H-paniculata_contig62858.14049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig62858:203..433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTTGCATTGTTGATCGTGTTCATCGGAGCGCTTTCCGGTATGGACCC TCCTCTCAACCCTCTAATGATGCTCTGGGTGAATCTCATCATGGACACCA TGGGCGCCCTCGCGCTGGGCACGGAAGCCCCGACGATGGAACTGCTCGAC CGTAGGCCGTATCGCCGCGATGCCAGGCTGATCAGCAACCCCATGTTAAG GAATATTCTGGTTCAGTCTACGTTTCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig62858:203..433+

>mRNA_H-paniculata_contig62858.14049.1 ID=mRNA_H-paniculata_contig62858.14049.1|Name=mRNA_H-paniculata_contig62858.14049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig62858:203..433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTTGCATTGTTGATCGTGTTCATCGGAGCGCTTTCCGGTATGGACCC
TCCTCTCAACCCTCTAATGATGCTCTGGGTGAATCTCATCATGGACACCA
TGGGCGCCCTCGCGCTGGGCACGGAAGCCCCGACGATGGAACTGCTCGAC
CGTAGGCCGTATCGCCGCGATGCCAGGCTGATCAGCAACCCCATGTTAAG
GAATATTCTGGTTCAGTCTACGTTTCAGGTGGTTGTTGCATTGTTGATCG
TGTTCATCGGAGCGCTTTCCGGTATGGACCCTCCTCTCAACCCTCTAATG
ATGCTCTGGGTGAATCTCATCATGGACACCATGGGCGCCCTCGCGCTGGG
CACGGAAGCCCCGACGATGGAACTGCTCGACCGTAGGCCGTATCGCCGCG
ATGCCAGGCTGATCAGCAACCCCATGTTAAGGAATATTCTGGTTCAGTCT
ACGTTTCAGGTG
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