mRNA_H-paniculata_contig6251.14008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6251.14008.1
Unique NamemRNA_H-paniculata_contig6251.14008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6251.14008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6251contigH-paniculata_contig6251:4843..7558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2162
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6251.14008.1prot_H-paniculata_contig6251.14008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6251 5607..6857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930713.5459552-UTR-H-paniculata_contig6251:4842..56061622930713.5459552-UTR-H-paniculata_contig6251:4842..5606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 4843..5606 -
1691481418.8404486-UTR-H-paniculata_contig6251:4842..56061691481418.8404486-UTR-H-paniculata_contig6251:4842..5606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 4843..5606 -
1622930713.5738409-UTR-H-paniculata_contig6251:6857..68591622930713.5738409-UTR-H-paniculata_contig6251:6857..6859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 6858..6859 -
1691481418.8593314-UTR-H-paniculata_contig6251:6857..68591691481418.8593314-UTR-H-paniculata_contig6251:6857..6859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 6858..6859 -
1622930713.589561-UTR-H-paniculata_contig6251:7413..75581622930713.589561-UTR-H-paniculata_contig6251:7413..7558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 7414..7558 -
1691481418.8689663-UTR-H-paniculata_contig6251:7413..75581691481418.8689663-UTR-H-paniculata_contig6251:7413..7558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6251 7414..7558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930713.557628-CDS-H-paniculata_contig6251:5606..68571622930713.557628-CDS-H-paniculata_contig6251:5606..6857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6251 5607..6857 -
1691481418.8500407-CDS-H-paniculata_contig6251:5606..68571691481418.8500407-CDS-H-paniculata_contig6251:5606..6857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6251 5607..6857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6251.14008.1

>prot_H-paniculata_contig6251.14008.1 ID=prot_H-paniculata_contig6251.14008.1|Name=mRNA_H-paniculata_contig6251.14008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp
MGITGDTTFGRARVAPHRRFQDLGETETDGRYNAVELKCVAEERGMGSDD
WQLQTNFPAMEKSSVSSSDAVTESRHPQIDPMMTVFTPVGRAAVEAACSR
HPISEGYLKQAITQFVEETTLDCCDSTCNTCSRANLTHCTFYQKRLVRDR
LLKGRGPRQRTYSAIQGCGTSSEGAGTTTGEVSSEKCERVAVSPTAKTSS
SPFAVGAETWSATPSSALPTTAADDDVLASSSGRHAVFKPTLERLVGGKR
KAEEADIGRTLCKANRPGGQVEMGIDPTREGAKCRLQGGHHTMPNNSQSE
QHLCCTETRELRTPSSTSLSSETGQDEGNGGEIETDCSCITCFMPNMIKR
RSAGAMNRVNSLGSIGPNATDGAGGAAVSVENSATDHLFTFASIAQEFVN
DNHERAHRLRPLVEGR*
back to top

mRNA from alignment at H-paniculata_contig6251:4843..7558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6251.14008.1 ID=mRNA_H-paniculata_contig6251.14008.1|Name=mRNA_H-paniculata_contig6251.14008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2716bp|location=Sequence derived from alignment at H-paniculata_contig6251:4843..7558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAACAAGCTACAGCCGCGTATCCTAGGTCCATATGTTATGGGGCCGA
TGACGAAGATAGGCAACCTGCAGACAGCGTTGATGGGCTGCCCGTTACTC
TGACGGAGTCGGTAGACGAGGGGAACTCGGGATTTGAACCACCAGGTGAG
GAGGTGGTAGCGAGCCATGGCCTGCCAGTATACCGGATCTACGCTGTTCA
ATGCTTCTCCATAAATGGGTTGGAAGTTGCGGGACGGTGCATGTAACTTG
CGGTGACAACTGCAGTGTGCATCGTTCCAATATGTACAGGCAGGATGTAT
GAACGCCCGCATGTGATCGAACCACCGTCTGCCGCCAGACGCAGATCATG
AGACTGTCCCTGCCCACACTACTAGGACCGTGTCGTTACTTTTCCATAGG
AAATCAATGGAGGGTTGTTCATCCACAATGATCGTTTTGTTTGGTGGCAT
GCAGCGGGATTGTAGTTAGTTAGCAATTTCTTCATTCATGTATTGCATTT
TTTCATGCTGCCAATTCTCCTCCCATGTGTGTGCCTAATTTTTGCTACCG
ACCGAGTTTATGGTCTTGGTTAAGAATTCGTCCGCCGTGGATATCATAGG
TTATCTCCATCCTGCCCCGGCTTGGTCTCCGCTCACAGTCATTGCAATCT
TGCTGTCCCGAACCTCAACGTTCATACGAGCCTCCTCGTTGTGAAGCAGG
CATGGGTATCACCGGCGATACTACGTTTGGCCGCGCGCGTGTGGCTCCAC
ATAGACGTTTCCAAGATCTTGGGGAGACCGAAACGGATGGACGATATAAT
GCCGTCGAACTAAAGTGTGTCGCAGAGGAGCGAGGCATGGGCTCAGACGA
CTGGCAGCTCCAGACCAACTTTCCTGCGATGGAAAAGAGTAGTGTATCTT
CAAGCGATGCTGTCACAGAGTCTCGGCACCCACAGATCGACCCCATGATG
ACAGTATTCACACCCGTGGGCCGCGCAGCCGTCGAAGCAGCGTGCTCTCG
GCATCCCATCAGCGAAGGTTATTTGAAGCAAGCGATTACGCAATTCGTCG
AAGAAACTACTCTCGATTGTTGCGATAGCACTTGTAATACTTGTAGTCGT
GCGAACTTGACCCACTGCACTTTCTACCAAAAAAGGCTCGTGCGTGATAG
ACTACTCAAGGGTCGCGGTCCAAGACAGAGGACTTACTCAGCGATTCAAG
GATGTGGTACATCAAGCGAAGGGGCTGGAACGACAACCGGTGAAGTCTCA
TCTGAAAAATGCGAGAGGGTTGCCGTTTCTCCCACTGCAAAAACTTCGTC
TTCTCCATTTGCCGTCGGTGCTGAGACCTGGAGTGCAACTCCATCCTCAG
CTTTGCCAACTACTGCCGCGGACGATGATGTGCTTGCCTCGTCCAGCGGC
AGACATGCGGTTTTCAAACCTACCCTTGAGAGACTTGTTGGGGGTAAACG
GAAAGCTGAAGAAGCAGATATTGGTCGAACACTATGCAAGGCCAACCGAC
CAGGTGGCCAGGTCGAAATGGGAATTGACCCAACCCGAGAAGGCGCCAAA
TGCCGTTTGCAGGGGGGGCACCACACGATGCCCAATAACAGCCAGTCCGA
GCAACATTTGTGTTGTACCGAAACCCGTGAGCTTAGGACGCCGTCTTCAA
CCTCTTTGTCGAGCGAGACTGGTCAAGACGAAGGTAATGGCGGAGAAATT
GAAACAGATTGTTCATGTATAACCTGCTTTATGCCGAATATGATCAAACG
TCGCTCTGCTGGGGCGATGAATCGGGTGAATAGCCTAGGGAGCATTGGGC
CTAACGCTACGGACGGCGCTGGAGGGGCTGCAGTATCCGTTGAAAATTCC
GCAACAGATCATCTGTTTACGTTCGCGAGTATTGCCCAAGAGTTTGTGAA
TGACAACCACGAGAGAGCGCACAGGCTCAGGCCCCTGGTTGAGGGAAGAT
AGTGTTCATGTGTGGCGGATGAGCTTCAAGGAAGAGGTGGTTCGCGCATC
CATATTTAGAGGTGCTGTTGGCTTTGAGTGATGAGTGTTTATCCCGTGTT
GTGATGAAAGGTGAAAAGTAGAGAATATGCGTGTGCAATACAAACAGTCC
CCGACTCGAGTACCATGATAAATTAGATGTTACAAAATTCAGATGTTTTT
TCTTCAGTTCCTTGATCAGTTTGCTCAAGAAGCACTGCTAACATTTGAGA
GATGCATAATAATGAGCAGGGTGTTGTCTCGTTGAGAAAGCTCAGGTAAA
CAATGTTGGCGAGATACGTCAAGAAACGCTCAACATAGCTGTGTGCGCGT
GGTTCATGTACAGAAGCTTTCGTATGGATAGTGTCAGGTGGTTCATGTTG
AGAGGCACCACAAGAATAGTAGGAATAGTGGCCGTTGCGGCTCGTAGAAG
CAGGACAAGACCCCTTATAAGGGCGAGATATTCAGGCATCTGCGTGTGTT
CACGAACACTAACTTTTGTTTGCATCTAAATGAAATTTATTTCGAACTGG
TTGAGAAATTAGGAGGAATTCACTTTTTGAACGAAAACTCCATTTGGCAT
GTATCTCGATTTGCTGACACTGCAGATCCCCCCTCCGCTCGGTCAATACT
TACTAATTTCAGCAGGAACAGTAGCCAAGTTTTTCGTTTTGCTTATTTTC
TCTCATTTTGACCAAGAAAAAAAGCCCAGCGTCTTGCGGCAAATAGCGTT
TCTGCTCTAAATAATT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6251:4843..7558-

>mRNA_H-paniculata_contig6251.14008.1 ID=mRNA_H-paniculata_contig6251.14008.1|Name=mRNA_H-paniculata_contig6251.14008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig6251:4843..7558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTATCACCGGCGATACTACGTTTGGCCGCGCGCGTGTGGCTCCACA
TAGACGTTTCCAAGATCTTGGGGAGACCGAAACGGATGGACGATATAATG
CCGTCGAACTAAAGTGTGTCGCAGAGGAGCGAGGCATGGGCTCAGACGAC
TGGCAGCTCCAGACCAACTTTCCTGCGATGGAAAAGAGTAGTGTATCTTC
AAGCGATGCTGTCACAGAGTCTCGGCACCCACAGATCGACCCCATGATGA
CAGTATTCACACCCGTGGGCCGCGCAGCCGTCGAAGCAGCGTGCTCTCGG
CATCCCATCAGCGAAGGTTATTTGAAGCAAGCGATTACGCAATTCGTCGA
AGAAACTACTCTCGATTGTTGCGATAGCACTTGTAATACTTGTAGTCGTG
CGAACTTGACCCACTGCACTTTCTACCAAAAAAGGCTCGTGCGTGATAGA
CTACTCAAGGGTCGCGGTCCAAGACAGAGGACTTACTCAGCGATTCAAGG
ATGTGGTACATCAAGCGAAGGGGCTGGAACGACAACCGGTGAAGTCTCAT
CTGAAAAATGCGAGAGGGTTGCCGTTTCTCCCACTGCAAAAACTTCGTCT
TCTCCATTTGCCGTCGGTGCTGAGACCTGGAGTGCAACTCCATCCTCAGC
TTTGCCAACTACTGCCGCGGACGATGATGTGCTTGCCTCGTCCAGCGGCA
GACATGCGGTTTTCAAACCTACCCTTGAGAGACTTGTTGGGGGTAAACGG
AAAGCTGAAGAAGCAGATATTGGTCGAACACTATGCAAGGCCAACCGACC
AGGTGGCCAGGTCGAAATGGGAATTGACCCAACCCGAGAAGGCGCCAAAT
GCCGTTTGCAGGGGGGGCACCACACGATGCCCAATAACAGCCAGTCCGAG
CAACATTTGTGTTGTACCGAAACCCGTGAGCTTAGGACGCCGTCTTCAAC
CTCTTTGTCGAGCGAGACTGGTCAAGACGAAGGTAATGGCGGAGAAATTG
AAACAGATTGTTCATGTATAACCTGCTTTATGCCGAATATGATCAAACGT
CGCTCTGCTGGGGCGATGAATCGGGTGAATAGCCTAGGGAGCATTGGGCC
TAACGCTACGGACGGCGCTGGAGGGGCTGCAGTATCCGTTGAAAATTCCG
CAACAGATCATCTGTTTACGTTCGCGAGTATTGCCCAAGAGTTTGTGAAT
GACAACCACGAGAGAGCGCACAGGCTCAGGCCCCTGGTTGAGGGAAGATA
GATGGGTATCACCGGCGATACTACGTTTGGCCGCGCGCGTGTGGCTCCAC
ATAGACGTTTCCAAGATCTTGGGGAGACCGAAACGGATGGACGATATAAT
GCCGTCGAACTAAAGTGTGTCGCAGAGGAGCGAGGCATGGGCTCAGACGA
CTGGCAGCTCCAGACCAACTTTCCTGCGATGGAAAAGAGTAGTGTATCTT
CAAGCGATGCTGTCACAGAGTCTCGGCACCCACAGATCGACCCCATGATG
ACAGTATTCACACCCGTGGGCCGCGCAGCCGTCGAAGCAGCGTGCTCTCG
GCATCCCATCAGCGAAGGTTATTTGAAGCAAGCGATTACGCAATTCGTCG
AAGAAACTACTCTCGATTGTTGCGATAGCACTTGTAATACTTGTAGTCGT
GCGAACTTGACCCACTGCACTTTCTACCAAAAAAGGCTCGTGCGTGATAG
ACTACTCAAGGGTCGCGGTCCAAGACAGAGGACTTACTCAGCGATTCAAG
GATGTGGTACATCAAGCGAAGGGGCTGGAACGACAACCGGTGAAGTCTCA
TCTGAAAAATGCGAGAGGGTTGCCGTTTCTCCCACTGCAAAAACTTCGTC
TTCTCCATTTGCCGTCGGTGCTGAGACCTGGAGTGCAACTCCATCCTCAG
CTTTGCCAACTACTGCCGCGGACGATGATGTGCTTGCCTCGTCCAGCGGC
AGACATGCGGTTTTCAAACCTACCCTTGAGAGACTTGTTGGGGGTAAACG
GAAAGCTGAAGAAGCAGATATTGGTCGAACACTATGCAAGGCCAACCGAC
CAGGTGGCCAGGTCGAAATGGGAATTGACCCAACCCGAGAAGGCGCCAAA
TGCCGTTTGCAGGGGGGGCACCACACGATGCCCAATAACAGCCAGTCCGA
GCAACATTTGTGTTGTACCGAAACCCGTGAGCTTAGGACGCCGTCTTCAA
CCTCTTTGTCGAGCGAGACTGGTCAAGACGAAGGTAATGGCGGAGAAATT
GAAACAGATTGTTCATGTATAACCTGCTTTATGCCGAATATGATCAAACG
TCGCTCTGCTGGGGCGATGAATCGGGTGAATAGCCTAGGGAGCATTGGGC
CTAACGCTACGGACGGCGCTGGAGGGGCTGCAGTATCCGTTGAAAATTCC
GCAACAGATCATCTGTTTACGTTCGCGAGTATTGCCCAAGAGTTTGTGAA
TGACAACCACGAGAGAGCGCACAGGCTCAGGCCCCTGGTTGAGGGAAGAT
AG
back to top