mRNA_H-paniculata_contig62288.13977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.940e-9 Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D + R+ V H+PGLD L S+ +GL V
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDG---KRIRMLDVLHIPGLDRRLLSVGKLAERGLNV 243
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE) HSP 1 Score: 59.3 bits (142), Expect = 3.110e-9 Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 1 EFWVADSGATAHMTPSNEFMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQG 255
+ W+ADSGA+ HMTP E+ YE+ S+ V + N ET+ G G + V M G+ LS V VP + NLFS+ V +G
Sbjct: 10 DMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKG 95
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 7.450e-9 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D + ++ V H+PGLD L S+ +G++V
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDG---KRIKMVEVLHIPGLDRRLLSVGKLAERGMSV 346
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 9.610e-9 Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D + R+ V ++PGLD L S+ +G++V
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSI---RMVEVLYIPGLDRRLLSVGKLAERGMSV 328
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8 Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLT 261
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G G V + H ++ V ++PGLD L S+ +GLT
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGT--VRLTSLNGKH-IKMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.850e-8 Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D + ++ V ++PGLD L S++ +G++V
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVRRLAERGMSV 349
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.900e-8 Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D + ++ V ++PGLD L S+ +G++V
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVSRLAERGMSV 325
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.320e-7 Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGAT HMTP + +++Y T ++++V +A+G+ + + G G + + D + R+ V HVPG D L S+ +G++V
Sbjct: 169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSI---RMVEVLHVPGFDRRLLSVGKLADRGMSV 252
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225VGX0_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGX0_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.400e-7 Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
W+ DSGATAHMTP + ++++ T ++++VT+A G+ + I G G + + D + R+ V HVPG D L S+ +G++V
Sbjct: 232 WLIDSGATAHMTPHRDDLYEFSTMPADMYVTIAAGKKIRIAGTGSVRLKGIDGKSI---RMVEVLHVPGFDRRLLSVGKLGDRGMSV 315
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA) HSP 1 Score: 56.2 bits (134), Expect = 3.120e-7 Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNEFMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQG 255
W+ADSGA+ HMT + E++ D+ T + V + NG+ +P+ G+G + + +G+ R+ V +VP L NLFS++ +G
Sbjct: 151 WLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKG 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62288.13977.1 >prot_H-paniculata_contig62288.13977.1 ID=prot_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp EFWVADSGATAHMTPSNEFMFDYETCSNLFVTVANGETLPIEGYGKMLVWback to top mRNA from alignment at H-paniculata_contig62288:243..506- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62288.13977.1 ID=mRNA_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig62288:243..506- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62288:243..506- >mRNA_H-paniculata_contig62288.13977.1 ID=mRNA_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig62288:243..506- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |