mRNA_H-paniculata_contig62288.13977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62288.13977.1
Unique NamemRNA_H-paniculata_contig62288.13977.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.940e-9
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D     + R+  V H+PGLD  L S+     +GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDG---KRIRMLDVLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-9
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 EFWVADSGATAHMTPSNEFMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQG 255
            + W+ADSGA+ HMTP  E+   YE+ S+   V + N ET+   G G + V M   G+     LS V  VP +  NLFS+   V +G
Sbjct:   10 DMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKG 95          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.450e-9
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D     + ++  V H+PGLD  L S+     +G++V
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDG---KRIKMVEVLHIPGLDRRLLSVGKLAERGMSV 346          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.610e-9
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   +   R+  V ++PGLD  L S+     +G++V
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSI---RMVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLT 261
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G   V +      H  ++  V ++PGLD  L S+     +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGT--VRLTSLNGKH-IKMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.850e-8
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D     + ++  V ++PGLD  L S++    +G++V
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVRRLAERGMSV 349          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.900e-8
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D     + ++  V ++PGLD  L S+     +G++V
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVSRLAERGMSV 325          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.320e-7
Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGAT HMTP  + +++Y T  ++++V +A+G+ + + G G + +   D   +   R+  V HVPG D  L S+     +G++V
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSI---RMVEVLHVPGFDRRLLSVGKLADRGMSV 252          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A225VGX0_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGX0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.400e-7
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV 264
            W+ DSGATAHMTP  + ++++ T  ++++VT+A G+ + I G G + +   D   +   R+  V HVPG D  L S+     +G++V
Sbjct:  232 WLIDSGATAHMTPHRDDLYEFSTMPADMYVTIAAGKKIRIAGTGSVRLKGIDGKSI---RMVEVLHVPGFDRRLLSVGKLGDRGMSV 315          
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 3.120e-7
Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNEFMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQG 255
            W+ADSGA+ HMT + E++ D+ T    + V + NG+ +P+ G+G +   +  +G+    R+  V +VP L  NLFS++    +G
Sbjct:  151 WLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKG 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62288.13977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M6VPY8_9STRA2.940e-939.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A4Y2F840_ARAVE3.110e-939.53Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
A0A329SN38_9STRA7.450e-936.78Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225UGS0_9STRA9.610e-935.63Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2P4XNP3_9STRA1.450e-840.70Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A6A3X5U6_9STRA4.850e-835.63CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA6.900e-835.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A225V0K2_9STRA2.320e-733.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225VGX0_9STRA2.400e-735.63Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A0V1HEX2_9BILA3.120e-734.52Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62288contigH-paniculata_contig62288:243..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.61617-CDS-H-paniculata_contig62288:242..5061622930709.61617-CDS-H-paniculata_contig62288:242..506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62288 243..506 -
1691481417.0108628-CDS-H-paniculata_contig62288:242..5061691481417.0108628-CDS-H-paniculata_contig62288:242..506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62288 243..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62288.13977.1prot_H-paniculata_contig62288.13977.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62288 243..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62288.13977.1

>prot_H-paniculata_contig62288.13977.1 ID=prot_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
EFWVADSGATAHMTPSNEFMFDYETCSNLFVTVANGETLPIEGYGKMLVW
MKDRGEMHKFRLSRVAHVPGLDTNLFSLQIEVHQGLTV
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mRNA from alignment at H-paniculata_contig62288:243..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62288.13977.1 ID=mRNA_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig62288:243..506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCATCTAA CGAATTCATGTTTGATTACGAAACCTGCAGTAATTTATTTGTGACGGTGG CTAACGGCGAAACGCTTCCGATTGAGGGATATGGCAAGATGTTGGTATGG ATGAAGGATCGGGGCGAGATGCACAAATTCCGCTTGAGTCGTGTAGCGCA TGTTCCGGGCCTGGACACAAATTTGTTTTCCCTGCAGATTGAAGTGCACC AGGGACTTACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig62288:243..506-

>mRNA_H-paniculata_contig62288.13977.1 ID=mRNA_H-paniculata_contig62288.13977.1|Name=mRNA_H-paniculata_contig62288.13977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig62288:243..506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCATCTAA
CGAATTCATGTTTGATTACGAAACCTGCAGTAATTTATTTGTGACGGTGG
CTAACGGCGAAACGCTTCCGATTGAGGGATATGGCAAGATGTTGGTATGG
ATGAAGGATCGGGGCGAGATGCACAAATTCCGCTTGAGTCGTGTAGCGCA
TGTTCCGGGCCTGGACACAAATTTGTTTTCCCTGCAGATTGAAGTGCACC
AGGGACTTACTGTCGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCAC
ATGACTCCATCTAACGAATTCATGTTTGATTACGAAACCTGCAGTAATTT
ATTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGCA
AGATGTTGGTATGGATGAAGGATCGGGGCGAGATGCACAAATTCCGCTTG
AGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTGCA
GATTGAAGTGCACCAGGGACTTACTGTC
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