mRNA_H-paniculata_contig6217.13962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6217.13962.1
Unique NamemRNA_H-paniculata_contig6217.13962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.900e-65
Identity = 147/309 (47.57%), Postives = 182/309 (58.90%), Query Frame = -3 
Query:  182 GPMGEEDTAEMLWRAKIDTGYYH-AMTDKC*WSGSKKVWRRLSKLLS----DTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLW---GANSKYQRLDSSPT*TPGVAVVF----VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVSTDDVLGGTVEALL-VPDDYSYSAPMFKAVVEDDGVELQEALDSSAEFAECIG 1066
            G MG E+TAEMLW+AK  TG YH AMTDK      + + RRL+        + +  L         G    VG  +    S ++ +  NT L   L   K R +  ER +    G  SK        T T   A       VS  E+ LATRAF QL+ P KLMEKVE FM  RGWQLIWTP  MPSFQPIELFWQ+  Q VSFN++TKRT+ +  ++ R  WYGD  WEGQ GGWKPADCSKL+A+A++E+NKWV++D VL G + AL  +P+ Y   AP    +V DDGVE QE L+ SAEF EC+G
Sbjct:  347 GSMGTEETAEMLWQAKRATGDYHDAMTDKM---FMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPE----SNSKGY--NTAL---LRKYKCRKITVEREVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKWVASDPVLRGQMGALEEIPESYEDDAPGHNDIVHDDGVEAQEQLELSAEFMECMG 643
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.170e-42
Identity = 108/277 (38.99%), Postives = 143/277 (51.62%), Query Frame = -3 
Query:  281 MGEEDTAEMLWRAKIDTGYYHA-MTDKC*WSGSKKVWRRLSKLLSDTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLWGANSKYQRLDSS--------PT*TPGVAVVF------VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 1060
            M +E+TAE LW+AK+  G YHA MTD       + +  RL+   +    F     +      +   G            F A  +L E   N K   V   R     + + +R +          PT  PG +         VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+NKWV   D VL GT+ +L  PD Y
Sbjct:   75 MEDEETAEFLWQAKLAKGDYHAAMTDSM---FMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHG------------FDAQVKLPES--NTKKHNVDLLRMFGAKSIRVKRKEGEQGVYNFEVPT-EPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGY 333
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.000e-41
Identity = 109/269 (40.52%), Postives = 142/269 (52.79%), Query Frame = -3 
Query:  281 MGEEDTAEMLWRAKIDTGYYHA-MTDKC*WSGSKKVWRRLSKLLSDTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLWGANSKYQRLDSSPT*TPGVAVVF------VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 1060
            M +E+TAE LW+AK+  G YHA MTD       + +  RLS   +    F     +      +   G +       T     N  L   +F  K+  V   RR  G     +     PT  PG +         VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+NKWV   D VL GT+ +L  PD Y
Sbjct:  355 MEDEETAEFLWQAKLAKGDYHAAMTDSM---FMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLR-MFGAKSIRV---RRKEGEQGVVEYNFEVPT-EPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGY 615
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 9.440e-41
Identity = 117/300 (39.00%), Postives = 154/300 (51.33%), Query Frame = -3 
Query:  191 MGEEDTAEMLWRAKIDTGYYHA-MTDKC*WSGSKKVWRRLSKLLSDTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLWGANSKYQRLDSSPT*TPGVAVVF------VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDYSYS-APMFKAVVEDDGVELQEALDSSAEFAE 1060
            M +E+TAE LW+AK+  G YHA MTD       + +  RLS   +    F     +      +   G         T     N  L   +F  K+  V   RR  G     +     PT  PG +         VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+NKWV   D VL GT+ +L  PD Y     P    V E  G ++Q+    SAE+ +
Sbjct:  345 MEDEETAEFLWQAKLAKGDYHAAMTDSM---FMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLR-MFGAKSIRV---RRKEGEQGVVEYNFEVPT-EPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVPPVGDVEEGVGEQIQQ---ESAEWGD 633
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.220e-40
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = -3 
Query:  281 VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 679
            VS AE+  ATR  + L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+NKWV   D VL GT+ +L  PD Y
Sbjct:  157 VSRAEVATATREHIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGY 291
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 9.730e-40
Identity = 73/135 (54.07%), Postives = 93/135 (68.89%), Query Frame = -3 
Query:  281 VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 679
            VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+ KWV   + VL GT+ +L  PD Y
Sbjct:  174 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVHHAIREMKKWVKDRNGVLSGTIGSLEKPDGY 308
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.860e-39
Identity = 75/135 (55.56%), Postives = 94/135 (69.63%), Query Frame = -3 
Query:  281 VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 679
            VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK ADCSKL+ +AI E+NKWV   D VL GT+ +L  PD Y
Sbjct:  370 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGY 504
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 8.170e-39
Identity = 70/130 (53.85%), Postives = 90/130 (69.23%), Query Frame = -3 
Query:  281 IVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVST-DDVLGGTVEALLVPDDY 664
            +  ATR ++ L  P +L E+V +FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WY DE W GQ+GGWK A+CSKL+ +AI E+NKWV   D VL GT+ +L+ PD Y
Sbjct:   90 LTTATREYIHLNHPERLEERVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDEAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLIKPDGY 219
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.020e-38
Identity = 103/265 (38.87%), Postives = 139/265 (52.45%), Query Frame = -3 
Query:  281 MGEEDTAEMLWRAKIDTGYYHA-MTDKC*WSGSKKVWRRLSKLLSDTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLWGANSKYQRLDSSP--T*TPGVAVVFVSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVSTDDV-LGGTVEALLVPDDY 1060
            M +E+TAE LW+AK+  G YHA MTD       + +  RLS   +    F     +      +   G         T     N  L  + F  K+  V  +    G       + S P  +   G     VS AE+  ATR +++L +P +L E+V  FM+K+GW LIWTP  MPSFQPIELFWQ+  Q VS N+E KR + +   + R  WYGD++W GQ+GGWK A+CSKL+ +AI E+NKWV   D  L G +  L  PD Y
Sbjct:  379 MEDEETAEFLWQAKLAKGDYHAAMTDSM---FMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRK-FGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGY 639
[Close]
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.670e-36
Identity = 99/266 (37.22%), Postives = 133/266 (50.00%), Query Frame = -3 
Query:  317 MGEEDTAEMLWRAKIDTGYYHA-MTDKC*WSGSKKVWRRLSKLLSDTR*FLFSTTLQPTTGMTQRVGCLKPTVRSMTRNFCANTRLEEELFNVKNRMVAAERRLWGANSKYQRLDSS----------PT*TPGVAVVF------VSSAEIVLATRAFLQLRFPHKLMEKVEVFMEKRGWQLIWTPVCMPSFQPIELFWQND*QVVSFNYETKRTINKSGSRFRS-WYGDEKWEGQDGGWKPADCSKLIAYAIEEINKWVSTDDVLG 1060
            M +E+TAE LW+AK+  G YHA MTD       + +  RLS   +    F     +      +   G            F A  ++ E   N K   V   R     + + +R +            PT  PG +         VS AE+  ATR ++ L  P +L E+V  FM K+GW LIWTP  MPSFQPIELFWQ+  Q VS  +E KR + +   + R  WYGD+ W GQ+GGWK A+CSKL+ +AI E+NKWV   D +G
Sbjct:  228 MEDEETAEFLWQAKLAKGDYHAAMTDSM---FMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHG------------FDAEVKVPES--NTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPT-EPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDEVG 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6217.13962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI3.900e-6547.57Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KHE7_9PHAE2.170e-4238.99DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE4.000e-4140.52DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE9.440e-4139.00DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JZ92_9PHAE1.220e-4055.56DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF39_9PHAE9.730e-4054.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K024_9PHAE1.860e-3955.56DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JS64_9PHAE8.170e-3953.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI2.020e-3838.87DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE3.670e-3637.22DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6217contigH-paniculata_contig6217:3879..5102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1224
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6217.13962.1prot_H-paniculata_contig6217.13962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6217 3922..4821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.7615654-UTR-H-paniculata_contig6217:3878..39211622930707.7615654-UTR-H-paniculata_contig6217:3878..3921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 3879..3921 +
1691481416.1496093-UTR-H-paniculata_contig6217:3878..39211691481416.1496093-UTR-H-paniculata_contig6217:3878..3921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 3879..3921 +
1622930707.790322-UTR-H-paniculata_contig6217:4821..51021622930707.790322-UTR-H-paniculata_contig6217:4821..5102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 4822..5102 +
1691481416.166463-UTR-H-paniculata_contig6217:4821..51021691481416.166463-UTR-H-paniculata_contig6217:4821..5102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 4822..5102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.776535-CDS-H-paniculata_contig6217:3921..48211622930707.776535-CDS-H-paniculata_contig6217:3921..4821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6217 3922..4821 +
1691481416.158193-CDS-H-paniculata_contig6217:3921..48211691481416.158193-CDS-H-paniculata_contig6217:3921..4821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6217 3922..4821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6217.13962.1

>prot_H-paniculata_contig6217.13962.1 ID=prot_H-paniculata_contig6217.13962.1|Name=mRNA_H-paniculata_contig6217.13962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
MSKSRIACSLRCKAWAAISIESTSRFQNPNFVTCYNFIPVFPFLSHTYTL
RKFRRTIKCLLKLHPVILHNSLEHGGTVTVIVRYEKGFHGTAQYIVGTYP
LINLFDSVRNKFATVCRFPPPVLPFPLFIPIPTSEPAPTLVYGTLRLVVE
ADNLLIILPKQLDRLKRRHANGGPDQLPPSLLHEHLNFLHKFVGKSKLKE
SSSGQHYLRTANKHHRHTWSSSWGTVQPLVLRICAPQPSFRRYHPILHVE
QFFFQPCICAKVPCHASYCWFQAPHPLRHTRGGLKRCREQESSCIRKQL*
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mRNA from alignment at H-paniculata_contig6217:3879..5102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6217.13962.1 ID=mRNA_H-paniculata_contig6217.13962.1|Name=mRNA_H-paniculata_contig6217.13962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig6217:3879..5102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGAAGAAGTGGCCAAGAAGGGGGTGAAAAAGAAGGTCCAATGTCGA
AAAGCCGTATTGCCTGTTCATTGCGTTGCAAAGCTTGGGCAGCTATAAGT
ATTGAGTCAACATCTCGTTTCCAAAACCCTAACTTTGTCACCTGCTACAA
TTTCATTCCTGTCTTCCCATTCCTCTCCCACACCTATACACTCCGCAAAT
TCCGCAGAACTATCAAGTGCCTCCTGAAGCTCCACCCCGTCATCCTCCAC
AACAGCCTTGAACATGGGGGCACTGTAACTGTAATCGTCCGGTACGAGAA
GGGCTTCCACGGTACCGCCCAGTACATCGTCGGTACTTACCCACTTATTA
ATCTCTTCGATAGCGTACGCAATAAGTTTGCTACAGTCTGCCGGTTTCCA
CCCCCCGTCTTGCCCTTCCCACTTTTCATCCCCATACCAACTTCTGAACC
TGCTCCCACTCTTGTTTATGGTACGCTTCGTCTCGTAGTTGAAGCTGACA
ACCTGTTAATCATTTTGCCAAAACAGCTCGATCGGCTGAAAAGACGGCAT
GCAAACGGGGGTCCAGATCAGCTGCCACCCTCGCTTCTCCATGAACACCT
CAACTTTCTCCATAAGTTTGTGGGGAAATCTAAGCTGAAGGAAAGCTCGA
GTGGCCAACACTATCTCCGCACTGCTAACAAACACCACCGCCACACCTGG
AGTTCAAGTTGGGGAACTGTCCAGCCTCTGGTACTTAGAATTTGCGCCCC
ACAACCTTCTTTCCGCCGCTACCATCCGATTCTTCACGTTGAACAGTTCT
TCTTCCAGCCTTGTATTTGCGCAAAAGTTCCGTGTCATGCTTCTTACTGT
TGGTTTCAGGCACCCCACCCTCTGCGTCATACCCGTGGTGGGTTGAAGCG
TTGTCGAGAACAAGAATCATCTTGTATCCGAAAGCAGCTTTGAAAGCCGG
CGCCAGACTTTTTTCGAGCCACTCCATTAACATTTATCGGTCATCGCGTG
GTAATACCCTGTGTCAATCTTGGCCCGCCAAAGCATCTCTGCGGTATCTT
CTTCACCCATCGGCCCTTCCCTTGCTTACCCTTACTCGTTTCCTTAGGTT
TGAACCACGCCTCCTGGATAGGAAATCCGGCATCATCACAAGCTGCCAAC
GGGACGTCCTTAGTGATTGCGTGAACCATGATTAATCGCTGACCCTTGCC
CGAAGTACGACCCATCCCGTCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6217:3879..5102+

>mRNA_H-paniculata_contig6217.13962.1 ID=mRNA_H-paniculata_contig6217.13962.1|Name=mRNA_H-paniculata_contig6217.13962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig6217:3879..5102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAAAAGCCGTATTGCCTGTTCATTGCGTTGCAAAGCTTGGGCAGC
TATAAGTATTGAGTCAACATCTCGTTTCCAAAACCCTAACTTTGTCACCT
GCTACAATTTCATTCCTGTCTTCCCATTCCTCTCCCACACCTATACACTC
CGCAAATTCCGCAGAACTATCAAGTGCCTCCTGAAGCTCCACCCCGTCAT
CCTCCACAACAGCCTTGAACATGGGGGCACTGTAACTGTAATCGTCCGGT
ACGAGAAGGGCTTCCACGGTACCGCCCAGTACATCGTCGGTACTTACCCA
CTTATTAATCTCTTCGATAGCGTACGCAATAAGTTTGCTACAGTCTGCCG
GTTTCCACCCCCCGTCTTGCCCTTCCCACTTTTCATCCCCATACCAACTT
CTGAACCTGCTCCCACTCTTGTTTATGGTACGCTTCGTCTCGTAGTTGAA
GCTGACAACCTGTTAATCATTTTGCCAAAACAGCTCGATCGGCTGAAAAG
ACGGCATGCAAACGGGGGTCCAGATCAGCTGCCACCCTCGCTTCTCCATG
AACACCTCAACTTTCTCCATAAGTTTGTGGGGAAATCTAAGCTGAAGGAA
AGCTCGAGTGGCCAACACTATCTCCGCACTGCTAACAAACACCACCGCCA
CACCTGGAGTTCAAGTTGGGGAACTGTCCAGCCTCTGGTACTTAGAATTT
GCGCCCCACAACCTTCTTTCCGCCGCTACCATCCGATTCTTCACGTTGAA
CAGTTCTTCTTCCAGCCTTGTATTTGCGCAAAAGTTCCGTGTCATGCTTC
TTACTGTTGGTTTCAGGCACCCCACCCTCTGCGTCATACCCGTGGTGGGT
TGAAGCGTTGTCGAGAACAAGAATCATCTTGTATCCGAAAGCAGCTTTGA
ATGTCGAAAAGCCGTATTGCCTGTTCATTGCGTTGCAAAGCTTGGGCAGC
TATAAGTATTGAGTCAACATCTCGTTTCCAAAACCCTAACTTTGTCACCT
GCTACAATTTCATTCCTGTCTTCCCATTCCTCTCCCACACCTATACACTC
CGCAAATTCCGCAGAACTATCAAGTGCCTCCTGAAGCTCCACCCCGTCAT
CCTCCACAACAGCCTTGAACATGGGGGCACTGTAACTGTAATCGTCCGGT
ACGAGAAGGGCTTCCACGGTACCGCCCAGTACATCGTCGGTACTTACCCA
CTTATTAATCTCTTCGATAGCGTACGCAATAAGTTTGCTACAGTCTGCCG
GTTTCCACCCCCCGTCTTGCCCTTCCCACTTTTCATCCCCATACCAACTT
CTGAACCTGCTCCCACTCTTGTTTATGGTACGCTTCGTCTCGTAGTTGAA
GCTGACAACCTGTTAATCATTTTGCCAAAACAGCTCGATCGGCTGAAAAG
ACGGCATGCAAACGGGGGTCCAGATCAGCTGCCACCCTCGCTTCTCCATG
AACACCTCAACTTTCTCCATAAGTTTGTGGGGAAATCTAAGCTGAAGGAA
AGCTCGAGTGGCCAACACTATCTCCGCACTGCTAACAAACACCACCGCCA
CACCTGGAGTTCAAGTTGGGGAACTGTCCAGCCTCTGGTACTTAGAATTT
GCGCCCCACAACCTTCTTTCCGCCGCTACCATCCGATTCTTCACGTTGAA
CAGTTCTTCTTCCAGCCTTGTATTTGCGCAAAAGTTCCGTGTCATGCTTC
TTACTGTTGGTTTCAGGCACCCCACCCTCTGCGTCATACCCGTGGTGGGT
TGAAGCGTTGTCGAGAACAAGAATCATCTTGTATCCGAAAGCAGCTTTGA
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