mRNA_H-paniculata_contig62117.13955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.210e-32 Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP+LE + ++ A+ + +LD+LQGYW MPL P+ QEIFTM+ G+Y+P R+PQGVLNATSY+QGTM +L L C VWVDDI W ++L+ L ++L R + G++ AAHK + ++W
Sbjct: 731 PMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKW 857
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 125 bits (314), Expect = 9.180e-31 Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 13 MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
MPN E ++ A + +LDLLQ YWQ PL P+ QEIFT+ T G+YTP R+PQG+LNATSYFQ T+ +L GL C VWVDD+ W +L+ L ++L+RL+ G+Y AAHK F + W
Sbjct: 830 MPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITW 955
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 117 bits (294), Expect = 4.500e-28 Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 13 MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQ-ELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
+P+ E + GA+ F LDLLQGYWQMPL +EIF++ T +G++ PTR+PQ VLNAT YFQ M ++L GL C VWVDD IW G+ + +L+ L +L RLQ GI+AAAHK F ++RW
Sbjct: 483 VPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDD-DIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRW 608
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6G0SJ18_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SJ18_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.340e-27 Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP LE + + GA V LD +GYWQ+PL QE+FT +T +G+YTPTR+P G +A +Y QG + ++ GLLG W+DDI +A EL+ L VL R + G+ A K + F E+ W
Sbjct: 18 PMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDILGYAESDDELLPLLDQVLARCEAYGLKLHAKKCEFFEIEVMW 147
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.820e-26 Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query: 1 EAMP--MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
EAMP MP LE + + GA VF LD +GYWQ+PL QE+FT +T +G+YTPTR+P G +A +Y QG + ++ LLG VW+DDI +A +EL++ L VL R + G+ A K F E++W
Sbjct: 523 EAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKW 657
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.160e-26 Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
P+P LE + + GA V +D +GYWQ+PL QE+FT +T +G+YTPTR+P G +A +Y QG + ++ GLLG W+DDI +A EL+ L VL R + G+ A K + F E++W
Sbjct: 134 PIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKW 263
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6A3GVC4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GVC4_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.650e-26 Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP L+ + G+ GA VF LD +GYWQ+PL P QE+++ VT +G+YTPTR+P G +A +Y QG + ++ L+G W+DDI +A L+ L VL R + G+ A K + F E++W
Sbjct: 87 PMPVLDVVLGGLEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKW 216
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.120e-25 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP LE + + GA V LD +GYWQ+PL QE+FT +T +G+YTPTR+P G +A +Y QG + ++ LLG W+DDI +A EL++ L VL R +V G+ A K + F E++W
Sbjct: 169 PMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKW 298
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM) HSP 1 Score: 110 bits (276), Expect = 1.170e-25 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP LE + + GA VF LD +GYWQ+PL P QEI++ VT +G+YTPTR+P G +A +Y QG + ++ LLG W+DDI +A L+ L VLER + G+ A K + F E++W
Sbjct: 18 PMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKW 147
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM) HSP 1 Score: 110 bits (276), Expect = 1.170e-25 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
PMP LE + + GA VF LD +GYWQ+PL P QEI++ VT +G+YTPTR+P G +A +Y QG + ++ LLG W+DDI +A L+ L VLER + G+ A K + F E++W
Sbjct: 744 PMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKW 873 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62117.13955.1 >prot_H-paniculata_contig62117.13955.1 ID=prot_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp MPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYback to top mRNA from alignment at H-paniculata_contig62117:362..760- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62117.13955.1 ID=mRNA_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig62117:362..760- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62117:362..760- >mRNA_H-paniculata_contig62117.13955.1 ID=mRNA_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig62117:362..760- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |