mRNA_H-paniculata_contig6187.13916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6187.13916.1
Unique NamemRNA_H-paniculata_contig6187.13916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6187.13916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6187contigH-paniculata_contig6187:8236..9829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6187.13916.1prot_H-paniculata_contig6187.13916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6187 8238..9790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930700.3661013-UTR-H-paniculata_contig6187:8235..82371622930700.3661013-UTR-H-paniculata_contig6187:8235..8237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6187 8236..8237 +
1691481412.548555-UTR-H-paniculata_contig6187:8235..82371691481412.548555-UTR-H-paniculata_contig6187:8235..8237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6187 8236..8237 +
1622930700.4176023-UTR-H-paniculata_contig6187:9790..98291622930700.4176023-UTR-H-paniculata_contig6187:9790..9829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6187 9791..9829 +
1691481412.5787935-UTR-H-paniculata_contig6187:9790..98291691481412.5787935-UTR-H-paniculata_contig6187:9790..9829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6187 9791..9829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930700.383279-CDS-H-paniculata_contig6187:8237..82811622930700.383279-CDS-H-paniculata_contig6187:8237..8281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 8238..8281 +
1691481412.558798-CDS-H-paniculata_contig6187:8237..82811691481412.558798-CDS-H-paniculata_contig6187:8237..8281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 8238..8281 +
1622930700.400317-CDS-H-paniculata_contig6187:9585..97901622930700.400317-CDS-H-paniculata_contig6187:9585..9790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 9586..9790 +
1691481412.5681257-CDS-H-paniculata_contig6187:9585..97901691481412.5681257-CDS-H-paniculata_contig6187:9585..9790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 9586..9790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6187.13916.1

>prot_H-paniculata_contig6187.13916.1 ID=prot_H-paniculata_contig6187.13916.1|Name=mRNA_H-paniculata_contig6187.13916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MTLLNEIKGLRASGRQILRPHNHTTTITTNTNTQACASFLSRTPSHGTGT
GRAGTCTYRTNPALRCPREQSPLGFTTAFIPE*
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mRNA from alignment at H-paniculata_contig6187:8236..9829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6187.13916.1 ID=mRNA_H-paniculata_contig6187.13916.1|Name=mRNA_H-paniculata_contig6187.13916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1594bp|location=Sequence derived from alignment at H-paniculata_contig6187:8236..9829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATGACACTGCTAAACGAGATCAAGGGTTTGCGGGCTTCGGGGAGGTGT
GTGTGTGTGTGTGTGTGTGTGTATGTATACTCAATATTGCGTCGAAATTT
ACTTGTCGCCAATTTACAAATTGTGTCCGCTACACCAGTAAAATCGTTTA
CTTCCGCACAAGCTAGTTATTGTTATTGTCGCAATCTTCGCAGAGCAGTC
GTCGATTCAAGCAAACTATACTCGCTGTCTCGAGTTTTCACGCGGGAGGA
AGTAGGCGATATCCGGACAAATATTGTGTATGTACTACAAGGTGGGCCGG
CCAAGAAAGAAATTATGCAGTCATCTCGTCCTCCACGGCGCAGTTTTTGT
AGTTCCGACCTGAAAATATGACACGTGATTCACAACGTACTCGCGGAGAC
CCCCAACGCGATAAGCATTTTTTTTAATTCTTTTTTTATTCTGGCAGATA
TATTATGGATTTTCCGCAGGGGGTGAAATTTTGATCCGTGGTAAGTGGTC
AAAAAGAAGAAAAAAGTCTGCTTATCGTGTTGGGGGGGGGCTCCACGAGT
ACGTTGCAAAGCACGTGTCAAAATTTCAGGTCGAAAATTCAAAAACTGCG
CCGTCGAGGACGATTTTTCACAAGCGCATTTATGCTCAGGAAAGTTGCTC
AGATGTACTTGTAGTAAACCTACAATTTGTTACAGTGTCCGATGATTTGC
CAATGCAGCACATATCCAATCTCAGCTTCAACCTATACGTCCCCTTGACC
TTGTCGTGCACAATCGTTGGGACTGACGCCCTCTGCCACTGCTGACCTAC
TAGCACGCTCGTAGCCATGTCACAGCGCGTGGGCTTGGGGTGTCCCTGAT
CTGCGCACTTGAATGCCGCATGACTTTAATTGCGCCGCAAAATCAAATCG
GTTTCAACACTAACATCCTTACACGCTAGTTGGGCAGCTAACCTCAAATT
TGTAGAACCAATGTCAATGGGCTAGGCACGTGGCTCTGCACATGCGCGTT
GATTGGCCGATTGCAACAATGCATTGGTTGATGAGATGATCGAGAACTGT
TGCCTAAATGTATGTATGTTACTGTATCACACTCGCGTAGCGACGTTAAT
GGAGTTAAGAGTGAGGGTTGGAGTATGATTGAAAGATGTCTTACAATAGT
TTGCTCATACCTCGCTATTTTTCTACCGAATAAAATACAAACTAAAGAGC
CTAATTGATGGGAAAATCTTTGATGAATAAAAAACGAAATGGTTGGCCTC
ATTGTTCTATACCTCTTTCCTGGATTCGTGGATATGATACTACTCATTAG
CTTACCACCACCCACCCCCACCCTTACAAATCGTCATGACCATCGTTCAG
ACAAATTCTTCGCCCCCACAACCACACCACTACCATCACCACCAATACCA
ACACCCAGGCCTGTGCTAGCTTTCTGTCTAGGACACCAAGTCATGGCACA
GGCACTGGGAGGGCTGGTACGTGCACGTACAGGACCAATCCAGCATTACG
CTGTCCAAGAGAGCAAAGTCCTCTTGGGTTCACCACAGCCTTCATCCCAG
AGTAGTGCTGAGAAGGGCACGGATTGGGAGGTGCATGCGAGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6187:8236..9829+

>mRNA_H-paniculata_contig6187.13916.1 ID=mRNA_H-paniculata_contig6187.13916.1|Name=mRNA_H-paniculata_contig6187.13916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig6187:8236..9829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACTGCTAAACGAGATCAAGGGTTTGCGGGCTTCGGGGAGATGACA
CTGCTAAACGAGATCAAGGGTTTGCGGGCTTCGGGGAGACAAATTCTTCG
CCCCCACAACCACACCACTACCATCACCACCAATACCAACACCCAGGCCT
GTGCTAGCTTTCTGTCTAGGACACCAAGTCATGGCACAGGCACTGGGAGG
GCTGGTACGTGCACGTACAGGACCAATCCAGCATTACGCTGTCCAAGAGA
GCAAAGTCCTCTTGGGTTCACCACAGCCTTCATCCCAGAGTAGACAAATT
CTTCGCCCCCACAACCACACCACTACCATCACCACCAATACCAACACCCA
GGCCTGTGCTAGCTTTCTGTCTAGGACACCAAGTCATGGCACAGGCACTG
GGAGGGCTGGTACGTGCACGTACAGGACCAATCCAGCATTACGCTGTCCA
AGAGAGCAAAGTCCTCTTGGGTTCACCACAGCCTTCATCCCAGAGTAG
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