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Homology
BLAST of mRNA_H-paniculata_contig6185.13913.1 vs. uniprot
Match: D7FK01_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK01_ECTSI) HSP 1 Score: 118 bits (295), Expect = 9.060e-26 Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 2
Query: 47 MVSGSSSAGCFQGKVFGLTGELPRRDIEATLKSNGAQISAIIHKRVSFVVCTPEAAKRRTQKARKACKYGIPLVSSDFLKACVMAKAVVDPSFFLVTGASAVATGVXXXXXXXXXXXVANNDARSIGERGGGVGMTS 457
M + + GC QGKVFGLTGEL R++++ LK++GA +SAIIHKRVSFV+CTP+A K TQK RKA K+GIPLVS F+ AC +A VVD + F V + + A NDA ++ G G ++
Sbjct: 1 MAPQAGNGGCLQGKVFGLTGELARKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKALKHGIPLVSQGFIAACALAGDVVDSTPFRVVTTANAPASIPGASTLAGSNAKAPNDATAVSVEGSNSGSSA 137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 117.9 |
| Seed ortholog evalue | 1e-23 |
| Seed eggNOG ortholog | 2880.D7FK01 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | BRCA1 C Terminus (BRCT) domain |
| EggNOG OGs | 2EABY@1,2SGKA@2759 |
| Ec32 ortholog description | BRCT domain |
| Ec32 ortholog | Ec-18_002980.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 1811 |
| Cds size | 1092 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6185.13913.1 >prot_H-paniculata_contig6185.13913.1 ID=prot_H-paniculata_contig6185.13913.1|Name=mRNA_H-paniculata_contig6185.13913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MLGIGQQKAMVSGSSSAGCFQGKVFGLTGELPRRDIEATLKSNGAQISAI
IHKRVSFVVCTPEAAKRRTQKARKACKYGIPLVSSDFLKACVMAKAVVDP
SFFLVTGASAVATGVPAANEDVVKACVANNDARSIGERGGGVGMTSVLED
DDTCMNTAVDKKKKKKSKNERNQPSPRLNKRRRSRGGDDATVSLSLLSSE
LSGIEQKTEGLRNGDTESQGGLPKATAPEEKRKNKKSRKKSTSSRTGKKN
DMEHRNALSRSPHQDPPDDGDESMRNAGDVSGSTLSRRGSERCDIGDSAG
TAADVVDHSRVPRDCGAEEGVKGNGCQVEEVAPGEVEAPRAIVDRGELSK
KTKKRKKTEKKKK* back to topmRNA from alignment at H-paniculata_contig6185:8289..11541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6185.13913.1 ID=mRNA_H-paniculata_contig6185.13913.1|Name=mRNA_H-paniculata_contig6185.13913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3253bp|location=Sequence derived from alignment at H-paniculata_contig6185:8289..11541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGGAACAGTCACACACATGTTAGGTATAGGGCAACAGAAAGCAATGG
TGTCAGGTTCGTCGAGTGCAGGGTGCTTTCAGGGTAAGGTGTTCGGGCTC
ACAGGCGAGCTTCCGAGGAGAGATATTGAGGCTACTCTCAAGTCCAACGG
AGCGCAGGTGCACCACAGTCAGCACGAACAGTGCTAAAAGAATTAGAGTA
TATATCATATTCTAGAGAAGTCTCACCGTACTCAAAAGGAACAAATTCAA
ATGCTGGCTTATTACAGGACCATACGATGACATACAAGGTTGTACGTGAG
TACCACCTTACCTGTTTCCCTGTACATACGAAGTGCAAATGGTACTGGAT
CTATCCTTTCATTAAACGCGACACATTGGACAACAAAAGATTTTTGAGAC
TAGAGCAATGGTCATTCTGCTGCAGTTTGTAGTCAAAGGAGTAGGCTGCG
CGCTCGAGTGGAAGCAGCACCACCATGCCCCGATTTTGAAATATGTATCC
GCAATCTCTTTATGCGACTTGATATATTGTAACATAGAAAGTTGGTCTAT
AAATTACAGTACTGCACGGCTTCACCTGGTAGTTGTTTCTTTATGGAAGG
GTGAATGTCCCAATGAGCAATTTCGGTAGCGATCTAAAGAATAACGGGAA
CACTTCGAGCTGTATGATAAACAACTGTTGAAACAACACCATTGAGACTA
ACGTAATAATACTGCAGGGACAATCGGAGTCTAGAACAATATATGGAACA
GTAAGTAGTCTCTGGAGTATGGTAAGACTGCAGTTCGGACTACCCAACAA
CTATGGTAGGTTGTCCCGGGTGTTTACATTTTACAGTGAGCGCAAGCCCC
AGGTCAACCCTACTTTGTTCCCTTTCCCAAGTGAAACGTTGAACAATCAT
TTCGTCTTAATTCTTCTGCCAATAGTCTTTTGCACAACAACGCAAGCGAG
AGGCACAGTCACTACGTTTCCCACTTGCCGGGTGTCTGCCGAAATACCAC
CACAAAAATAGCCCCTTCCCATCGGTTGCGCACCACTCCATACCTCCCAG
ATATCTGCCATCATCCACAAACGCGTGTCTTTCGTGGTATGCACGCCGGA
GGCTGCTAAGCGCCGCACCCAAAAGGCCCGGAAAGCTTGCAAGTATGGGA
TACCTCTGGTTTCTTCGGTCAGTTACATAAGATAGAATATGCCTCCAAGA
CTGATGTAGCAGAGAACAATGACTTGACCTTGATACTGCACTGGAGTCGT
ATTCTGTATATTTGTTTTTCCGCGGTGGTATACATCGTGCCTTCGTCTCC
CAATACGTCAAAACGACACGGAGTTGTACGTACTTCTTGTATCAATGCAT
GCTTTCGCTTTCACGCAACACCAGCAAGAGGGAACACGGCCAATGGATAA
CGCCCGAACCTGCTTCATGATTGCAAATAATTCATACTTCAAACCTTCGC
CGCGGTATCTAGTGTATTCTTATTGCCAATCAATTCCGTCCTTCGCGCAG
GCTTTCGCTTTTCGCGTTGTGGAGCACGAAAATATCTTATATCGTACATA
TGTTTGCCGTTGACTTGGGCAGGCCATAGGGTAGCGGTCAACTATCCAAA
GGTAAGCACACGCTTAGTACTCTTCCTTCCCGGACACCTTCTCCTATTGC
CCCCCCAATCCGCCTTCTCCTATTGAACCTCGTTCTCGGTCCATGTTAAC
CCCGCTTTGGCCCCAGGATTTTCTCAAAGCGTGTGTAATGGCAAAGGCGG
TGGTAGACCCTAGCTTCTTTCTCGTGACTGGTGCATCTGCTGTCGCCACC
GGCGTCCCTGCGGCGAACGAAGACGTTGTTAAAGCATGTGTGGCGAACAA
TGATGCCCGCAGTATTGGGGAACGAGGAGGAGGGGTCGGGATGACATCCG
TGTTGGAAGATGACGATACGTGCATGAATACGGCGGTCGACAAAAAGAAG
AAAAAGAAGAGCAAGAATGAAAGAAACCAACCATCGCCTCGGTTGAACAA
AAGAAGACGGTCACGAGGCGGCGATGATGCCACCGTGTCGCTGTCATTGC
TGTCGAGCGAGCTGTCGGGGATAGAACAAAAAACAGAAGGATTAAGAAAT
GGTGACACCGAAAGCCAGGGAGGCTTGCCGAAAGCTACTGCTCCGGAAGA
GAAGAGAAAAAACAAGAAGAGCAGAAAAAAATCAACAAGTAGTCGAACTG
GCAAGAAAAATGACATGGAGCACCGTAATGCGCTTAGTCGTTCTCCACAT
CAAGACCCTCCTGATGATGGAGACGAGTCCATGAGAAATGCAGGTGATGT
CAGTGGCAGTACTCTAAGTCGACGGGGCTCGGAACGATGCGATATTGGCG
ACTCTGCCGGAACGGCAGCAGACGTGGTCGATCACAGTCGTGTACCCCGC
GATTGTGGTGCCGAGGAAGGGGTGAAGGGGAATGGGTGCCAGGTTGAAGA
AGTGGCGCCGGGAGAGGTGGAAGCGCCTCGGGCTATTGTTGATCGTGGAG
AGCTTTCAAAAAAGACGAAAAAGAGAAAGAAGACCGAGAAAAAGAAAAAA
TAAAGAGTAGTGTAGCTCGCGTAAAGGCAGGGGGGCATCGTTTTGAGATG
AAAGCCAGGCGTTTTTAGCATGTGAAAGTATTCTTCGAAAGGAGGGCAAG
GCCGTCAGTGGAACTGAATGCGTACTGCTGTGTATTATGCCTCTCCTGAT
TTGATGTTTCGGGTATCTTTTTTTTTTACTTGTTGTGTTGTGTTGTACCC
TATTTGTCAGCATTATATTTAGAGCGTATTTGGATTTTGAAATCGTTTTC
ACTCATATTGTCGGTGTTTCGTCCGTGGACTAACTCATGTGTGACATGGC
ACGCGCTGATGCTGCAAATAGTGAACATTGGGATTTTGTAGCTATTTTCC
TTCGTAGTAGTCCTCAAATATGCAGCAAAAAGGGCAGTGAGTGTTGTTCC
GGATCAGGCCGCGCATCGTAGCACACGCTAGAAAATGTCCACGTTCTGTG
TACCTTTGGAATATTTTTCGTTGTAATCCTACTGTATTCTGCAGGGTCTG
TCCCCGATTTCCGTTTTATCTTTCGTTTTCAAGCAATATGTTATTGACAC
CATGAGCAAATGGTAATATATAAAGCAAATATTTATGACGGAGAGGTGTA
GTATAGAATCCAGATTTTTGTGTCATTTTGTTAATACCGATCGGATAGAC
AACAGCTGAGGGTTAATATATTATCTGATTTATCCAAAGTTAACTGTAGG
TGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig6185:8289..11541- >mRNA_H-paniculata_contig6185.13913.1 ID=mRNA_H-paniculata_contig6185.13913.1|Name=mRNA_H-paniculata_contig6185.13913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig6185:8289..11541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTATAGGGCAACAGAAAGCAATGGTGTCAGGTTCGTCGAGTGC
AGGGTGCTTTCAGGGTAAGGTGTTCGGGCTCACAGGCGAGCTTCCGAGGA
GAGATATTGAGGCTACTCTCAAGTCCAACGGAGCGCAGATGTTAGGTATA
GGGCAACAGAAAGCAATGGTGTCAGGTTCGTCGAGTGCAGGGTGCTTTCA
GGGTAAGGTGTTCGGGCTCACAGGCGAGCTTCCGAGGAGAGATATTGAGG
CTACTCTCAAGTCCAACGGAGCGCAGATATCTGCCATCATCCACAAACGC
GTGTCTTTCGTGGTATGCACGCCGGAGGCTGCTAAGCGCCGCACCCAAAA
GGCCCGGAAAGCTTGCAAGTATGGGATACCTCTGGTTTCTTCGATATCTG
CCATCATCCACAAACGCGTGTCTTTCGTGGTATGCACGCCGGAGGCTGCT
AAGCGCCGCACCCAAAAGGCCCGGAAAGCTTGCAAGTATGGGATACCTCT
GGTTTCTTCGGATTTTCTCAAAGCGTGTGTAATGGCAAAGGCGGTGGTAG
ACCCTAGCTTCTTTCTCGTGACTGGTGCATCTGCTGTCGCCACCGGCGTC
CCTGCGGCGAACGAAGACGTTGTTAAAGCATGTGTGGCGAACAATGATGC
CCGCAGTATTGGGGAACGAGGAGGAGGGGTCGGGATGACATCCGTGTTGG
AAGATGACGATACGTGCATGAATACGGCGGTCGACAAAAAGAAGAAAAAG
AAGAGCAAGAATGAAAGAAACCAACCATCGCCTCGGTTGAACAAAAGAAG
ACGGTCACGAGGCGGCGATGATGCCACCGTGTCGCTGTCATTGCTGTCGA
GCGAGCTGTCGGGGATAGAACAAAAAACAGAAGGATTAAGAAATGGTGAC
ACCGAAAGCCAGGGAGGCTTGCCGAAAGCTACTGCTCCGGAAGAGAAGAG
AAAAAACAAGAAGAGCAGAAAAAAATCAACAAGTAGTCGAACTGGCAAGA
AAAATGACATGGAGCACCGTAATGCGCTTAGTCGTTCTCCACATCAAGAC
CCTCCTGATGATGGAGACGAGTCCATGAGAAATGCAGGTGATGTCAGTGG
CAGTACTCTAAGTCGACGGGGCTCGGAACGATGCGATATTGGCGACTCTG
CCGGAACGGCAGCAGACGTGGTCGATCACAGTCGTGTACCCCGCGATTGT
GGTGCCGAGGAAGGGGTGAAGGGGAATGGGTGCCAGGTTGAAGAAGTGGC
GCCGGGAGAGGTGGAAGCGCCTCGGGCTATTGTTGATCGTGGAGAGCTTT
CAAAAAAGACGAAAAAGAGAAAGAAGACCGAGAAAAAGAAAAAATAAGAT
TTTCTCAAAGCGTGTGTAATGGCAAAGGCGGTGGTAGACCCTAGCTTCTT
TCTCGTGACTGGTGCATCTGCTGTCGCCACCGGCGTCCCTGCGGCGAACG
AAGACGTTGTTAAAGCATGTGTGGCGAACAATGATGCCCGCAGTATTGGG
GAACGAGGAGGAGGGGTCGGGATGACATCCGTGTTGGAAGATGACGATAC
GTGCATGAATACGGCGGTCGACAAAAAGAAGAAAAAGAAGAGCAAGAATG
AAAGAAACCAACCATCGCCTCGGTTGAACAAAAGAAGACGGTCACGAGGC
GGCGATGATGCCACCGTGTCGCTGTCATTGCTGTCGAGCGAGCTGTCGGG
GATAGAACAAAAAACAGAAGGATTAAGAAATGGTGACACCGAAAGCCAGG
GAGGCTTGCCGAAAGCTACTGCTCCGGAAGAGAAGAGAAAAAACAAGAAG
AGCAGAAAAAAATCAACAAGTAGTCGAACTGGCAAGAAAAATGACATGGA
GCACCGTAATGCGCTTAGTCGTTCTCCACATCAAGACCCTCCTGATGATG
GAGACGAGTCCATGAGAAATGCAGGTGATGTCAGTGGCAGTACTCTAAGT
CGACGGGGCTCGGAACGATGCGATATTGGCGACTCTGCCGGAACGGCAGC
AGACGTGGTCGATCACAGTCGTGTACCCCGCGATTGTGGTGCCGAGGAAG
GGGTGAAGGGGAATGGGTGCCAGGTTGAAGAAGTGGCGCCGGGAGAGGTG
GAAGCGCCTCGGGCTATTGTTGATCGTGGAGAGCTTTCAAAAAAGACGAA
AAAGAGAAAGAAGACCGAGAAAAAGAAAAAATAA back to top
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