mRNA_H-paniculata_contig6159.13876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6159.13876.1
Unique NamemRNA_H-paniculata_contig6159.13876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.280e-20
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRDFDGKIGIWRVCVIK 204
            +H+DE+WFYL+ +K+++ +F  E+  G  +V  +SH+ K+M I A  RPDP+ DFDGKIGIWR+CVI+
Sbjct:  155 VHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIE 222          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: A0A6A3EEJ7_9STRA (Uncharacterized protein n=8 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EEJ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.580e-9
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTK-----VQQKSHILKVMFICAVPRPDPSRDFDGKIGIWRV 192
            +H+DE WFY+      + +   ++ V S +     VQ K HI KVMF+CAV RP    D+DGK+GIW V
Sbjct:  163 VHLDEKWFYMKKVGKHVYILTGKDDVPSEEPPVQFVQNKRHIKKVMFLCAVARP--RGDWDGKVGIWPV 229          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: UPI001C272034 (uncharacterized protein LOC121760844 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C272034)

HSP 1 Score: 58.2 bits (139), Expect = 1.990e-8
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRD----FDGKIGIW 186
            +HIDE WFY+    DR  + P E+    +  + K  I KVMF+CAV RP    D    FDGKIGI+
Sbjct:  175 VHIDEKWFYMTKASDRYYLLPDEDEPYRS-CRSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGIF 239          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: UPI001C251DD6 (uncharacterized protein LOC121809230 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C251DD6)

HSP 1 Score: 58.2 bits (139), Expect = 2.220e-8
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRD----FDGKIGIW 186
            IHIDE WFY+    DR  + P E+       + K  I KVMF+CAV RP    D    FDGKIGI+
Sbjct:   62 IHIDEKWFYMTKASDRYYLLPDEDEPYRA-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGIF 126          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: UPI0020096116 (uncharacterized protein LOC125197723 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020096116)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-8
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRD----FDGKIGIW 186
            +HIDE WFY+    DR  + P E+    +  + K  I KVMF+CAV RP    D    FDGKIGI+
Sbjct:  101 VHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGIF 165          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: UPI001C269E17 (uncharacterized protein LOC121775707 n=4 Tax=Salvia splendens TaxID=180675 RepID=UPI001C269E17)

HSP 1 Score: 58.2 bits (139), Expect = 3.150e-8
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRD----FDGKIGIW 186
            +HIDE WFY+    DR  + P E+    +  + K  I KVMF+CAV RP    D    FDGKIGI+
Sbjct:  180 VHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRFITKVMFMCAVSRPQFDTDGQTIFDGKIGIF 244          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: UPI001C26DA77 (uncharacterized protein LOC121771521 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C26DA77)

HSP 1 Score: 57.8 bits (138), Expect = 3.510e-8
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRD----FDGKIGI 183
            +HIDE WFY+I   ++  M P E+    +  + K  I KVMF+CAV RP    D    FDGKIGI
Sbjct:  188 VHIDEKWFYMIKASEKYYMLPDEDEPYMS-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGI 251          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: A0A024THY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THY2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.800e-8
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPDPSRDFDGKIGIW 186
            +H+DE WF    D+ ++ +   EE V     + K  + KVMF+CAV RP P+  FD KIG+W
Sbjct:  173 VHLDEKWFNADKDRRKVYLVDGEE-VKPRGCKSKRFLPKVMFLCAVARPQPALGFDVKIGLW 233          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.980e-8
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRP--DPSR--DFDGKIGIW 186
            +HIDE WF +   K R+ + P E        Q KSH+ K+MF+CA+ RP  DP+    FD  IGIW
Sbjct:   28 VHIDEKWFVVNKTKRRVYLTPTEPN-PQRHAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIW 92          
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPD----PSRDFDGKIGIW 186
            +H+DE WF++   K R+ + P E        + KSHI K+MF+CAV RP         FDG++G+W
Sbjct:  209 VHLDEKWFFMKKTKRRVYLTPTEP-TPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGMW 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6159.13876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE8.280e-2051.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3EEJ7_9STRA6.580e-943.48Uncharacterized protein n=8 Tax=Phytophthora fraga... [more]
UPI001C2720341.990e-845.45uncharacterized protein LOC121760844 n=1 Tax=Salvi... [more]
UPI001C251DD62.220e-846.97uncharacterized protein LOC121809230 n=1 Tax=Salvi... [more]
UPI00200961163.090e-845.45uncharacterized protein LOC125197723 n=1 Tax=Salvi... [more]
UPI001C269E173.150e-845.45uncharacterized protein LOC121775707 n=4 Tax=Salvi... [more]
UPI001C26DA773.510e-846.15uncharacterized protein LOC121771521 n=1 Tax=Salvi... [more]
A0A024THY2_9STRA3.800e-841.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5D6XR23_9STRA9.980e-843.94Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WV30_9STRA1.090e-739.39Transposase putative n=1 Tax=Albugo laibachii Nc14... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6159contigH-paniculata_contig6159:8084..8290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.984131-CDS-H-paniculata_contig6159:8083..82901622930694.984131-CDS-H-paniculata_contig6159:8083..8290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 8084..8290 -
1691481409.9274087-CDS-H-paniculata_contig6159:8083..82901691481409.9274087-CDS-H-paniculata_contig6159:8083..8290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6159 8084..8290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6159.13876.1prot_H-paniculata_contig6159.13876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6159 8084..8290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6159.13876.1

>prot_H-paniculata_contig6159.13876.1 ID=prot_H-paniculata_contig6159.13876.1|Name=mRNA_H-paniculata_contig6159.13876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
IHIDEAWFYLICDKDRICMFPKEERVGSTKVQQKSHILKVMFICAVPRPD
PSRDFDGKIGIWRVCVIK*
back to top

mRNA from alignment at H-paniculata_contig6159:8084..8290-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6159.13876.1 ID=mRNA_H-paniculata_contig6159.13876.1|Name=mRNA_H-paniculata_contig6159.13876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig6159:8084..8290- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACATAGACGAAGCATGGTTTTACCTAATATGCGACAAGGATCGCAT CTGCATGTTCCCCAAGGAGGAAAGGGTGGGGTCCACTAAAGTACAGCAGA AGAGCCACATTCTTAAGGTGATGTTCATCTGCGCCGTTCCGCGTCCAGAT CCTTCCCGCGATTTCGACGGTAAGATTGGAATCTGGCGTGTTTGCGTCAT CAAGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6159:8084..8290-

>mRNA_H-paniculata_contig6159.13876.1 ID=mRNA_H-paniculata_contig6159.13876.1|Name=mRNA_H-paniculata_contig6159.13876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig6159:8084..8290- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACATAGACGAAGCATGGTTTTACCTAATATGCGACAAGGATCGCAT
CTGCATGTTCCCCAAGGAGGAAAGGGTGGGGTCCACTAAAGTACAGCAGA
AGAGCCACATTCTTAAGGTGATGTTCATCTGCGCCGTTCCGCGTCCAGAT
CCTTCCCGCGATTTCGACGGTAAGATTGGAATCTGGCGTGTTTGCGTCAT
CAAGTAGATTCACATAGACGAAGCATGGTTTTACCTAATATGCGACAAGG
ATCGCATCTGCATGTTCCCCAAGGAGGAAAGGGTGGGGTCCACTAAAGTA
CAGCAGAAGAGCCACATTCTTAAGGTGATGTTCATCTGCGCCGTTCCGCG
TCCAGATCCTTCCCGCGATTTCGACGGTAAGATTGGAATCTGGCGTGTTT
GCGTCATCAAGTAG
back to top