mRNA_H-paniculata_contig6151.13866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6151.13866.1
Unique NamemRNA_H-paniculata_contig6151.13866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6151.13866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6151contigH-paniculata_contig6151:363..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size676
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6151.13866.1prot_H-paniculata_contig6151.13866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6151 386..760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.9491441-UTR-H-paniculata_contig6151:362..3851622930693.9491441-UTR-H-paniculata_contig6151:362..385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6151 363..385 +
1691481409.4392662-UTR-H-paniculata_contig6151:362..3851691481409.4392662-UTR-H-paniculata_contig6151:362..385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6151 363..385 +
1622930694.0013163-UTR-H-paniculata_contig6151:760..10381622930694.0013163-UTR-H-paniculata_contig6151:760..1038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6151 761..1038 +
1691481409.4619372-UTR-H-paniculata_contig6151:760..10381691481409.4619372-UTR-H-paniculata_contig6151:760..1038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6151 761..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.9704235-CDS-H-paniculata_contig6151:385..7601622930693.9704235-CDS-H-paniculata_contig6151:385..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6151 386..760 +
1691481409.4487355-CDS-H-paniculata_contig6151:385..7601691481409.4487355-CDS-H-paniculata_contig6151:385..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6151 386..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6151.13866.1

>prot_H-paniculata_contig6151.13866.1 ID=prot_H-paniculata_contig6151.13866.1|Name=mRNA_H-paniculata_contig6151.13866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MRKGCDSWSRTLFEFYVCVCIWPLNPIRTRHKRRSIVAAVLAEGKTPMDQ
PVLLSDRTRDHSLVSTTISISTFRHLNAYLDVKHSQKVESRKSIVEVAAP
QGLLFIIIIHTCRRRINSEPVELQ*
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mRNA from alignment at H-paniculata_contig6151:363..1038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6151.13866.1 ID=mRNA_H-paniculata_contig6151.13866.1|Name=mRNA_H-paniculata_contig6151.13866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at H-paniculata_contig6151:363..1038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGCTCAGCAAGGTACAAGCATGAGGAAAGGTTGTGATTCGTGGTCA
AGGACGCTTTTTGAGTTTTATGTTTGTGTGTGTATTTGGCCACTTAACCC
CATCCGGACGCGGCATAAGCGCCGATCAATCGTCGCTGCTGTTTTGGCGG
AGGGCAAAACGCCAATGGATCAACCAGTGCTCCTCTCAGACAGGACCAGA
GACCACTCCCTCGTCTCTACAACAATCTCTATTTCTACATTTCGACATCT
CAACGCCTATTTGGATGTAAAGCATAGCCAAAAAGTAGAGTCCAGAAAAT
CGATTGTCGAGGTGGCGGCCCCGCAAGGGTTATTATTTATTATTATTATT
CACACATGTAGGCGCCGGATAAATAGCGAGCCGGTGGAACTGCAATAGTA
TACCATAACAAAAGTAATGATAATAAAAAATTAATAGAGTTTGAACGGCA
GAACAGGGGGTTTAACAAAATATGTTTAGGTTGCTCCAAGATTTTTGTAT
GTGCTTTGCCGACTTTTGATTGGTCTGCCTGGTATTTTATGAGTAGTTTG
TAACAGGGCTACATTTCTTCGTCTCGAGCTATATGTAGAGAGCACTATCG
ATACATTGTGTGTGATATTTTGAGGTATCTTAAAATCTTTTCGGGGTAGA
TTTAAATCATTCATATCATATCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6151:363..1038+

>mRNA_H-paniculata_contig6151.13866.1 ID=mRNA_H-paniculata_contig6151.13866.1|Name=mRNA_H-paniculata_contig6151.13866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig6151:363..1038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAAGGTTGTGATTCGTGGTCAAGGACGCTTTTTGAGTTTTATGT
TTGTGTGTGTATTTGGCCACTTAACCCCATCCGGACGCGGCATAAGCGCC
GATCAATCGTCGCTGCTGTTTTGGCGGAGGGCAAAACGCCAATGGATCAA
CCAGTGCTCCTCTCAGACAGGACCAGAGACCACTCCCTCGTCTCTACAAC
AATCTCTATTTCTACATTTCGACATCTCAACGCCTATTTGGATGTAAAGC
ATAGCCAAAAAGTAGAGTCCAGAAAATCGATTGTCGAGGTGGCGGCCCCG
CAAGGGTTATTATTTATTATTATTATTCACACATGTAGGCGCCGGATAAA
TAGCGAGCCGGTGGAACTGCAATAGATGAGGAAAGGTTGTGATTCGTGGT
CAAGGACGCTTTTTGAGTTTTATGTTTGTGTGTGTATTTGGCCACTTAAC
CCCATCCGGACGCGGCATAAGCGCCGATCAATCGTCGCTGCTGTTTTGGC
GGAGGGCAAAACGCCAATGGATCAACCAGTGCTCCTCTCAGACAGGACCA
GAGACCACTCCCTCGTCTCTACAACAATCTCTATTTCTACATTTCGACAT
CTCAACGCCTATTTGGATGTAAAGCATAGCCAAAAAGTAGAGTCCAGAAA
ATCGATTGTCGAGGTGGCGGCCCCGCAAGGGTTATTATTTATTATTATTA
TTCACACATGTAGGCGCCGGATAAATAGCGAGCCGGTGGAACTGCAATAG
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