prot_H-paniculata_contig6118.13823.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6118.13823.1
Unique Name	prot_H-paniculata_contig6118.13823.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	639

Homology

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BLAST of mRNA_H-paniculata_contig6118.13823.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.370e-29
Identity = 155/431 (35.96%), Postives = 193/431 (44.78%), Query Frame = 0

Query:  244 GGKRALNPERMERKATREKRRREEVNEKFEQLLTVLEEAEATSGLEPPAPEDGQHA-NACINGRRVEVLHRTISVLRKLLHDRRQRTHHLVNAPAPICFEQPSSLKKQPPNPSPSPPSFCDGHGHNAIAAAIPPS-DVATPQRPA--GGASSEASPSVTTSGLTSSR----------SSESITLPEPTAQGH--------VVVPVQPPHGGHPHAHSTSMPVPTGFAMAYHPGMPMPPGAVSIPAGATGHMAAAAAAGVTGMHPNMQGRHAQPFFIAVPMFMPPGQGMGGTXXXXXXXXXXXXXXXXXXXXXXPAVPSPVPPPAA--AVTVAAQPSA---ASTSILAAD------EKSPCEGKAGFVGALTPMAGVPDVSTNVTL--GKPSWPMPGGVGFPPMM-LQMPQFVTQALTAQDGDEKVTHAMCA 638
            GGKR LNP+RMERKA+REKRRREEVNEKF+QLL VLEEAEATSGLEPPA +DG+ A +ACINGRRVEVL RTI V++KLL +RR+    L   P P       +L                     A+AA I       T + P   GG  SE   +                    + + I   E  A+G             V    G     HS    V    +  +HP M M PG   +P    GH   +   G+ G HP        P F AVPM++P GQGM                                PP AA  A T AA+ +A   A+T++ A                              D +  V    GK +W +P G+G+  MM LQMPQFVTQAL+ ++G EK THA+CA
Sbjct:  210 GGKRPLNPDRMERKASREKRRREEVNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREA---LAGVPPPAD----DTLA--------------------AVAAGISNGWQEETAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXXXEGXXAKHHSVMHHVAMSVS-GHHPSMMMAPGFTGVP----GHPVPSPPHGIPG-HPG------GPIFFAVPMYIPQGQGM--------------------------------PPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569

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BLAST of mRNA_H-paniculata_contig6118.13823.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.330e-6
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 0

Query:  596 GKPSWPMPGGVGFPPMM-LQMPQFVTQALTAQDGDEKVTHAMCA 638
            GK +W +P G+G+  MM LQMPQFVTQAL+ ++G+EK THA+CA
Sbjct:  128 GKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6118.13823.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6118.13823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JVI5_9PHAE	3.370e-29	35.96	BHLH domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FS24_ECTSI	1.330e-6	61.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 265..285
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 255..320 e-value: 2.7E-4 score: 20.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 252..321 score: 9.248
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 243..324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6118	contig	H-paniculata_contig6118:918..11417 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6118.13823.1	mRNA_H-paniculata_contig6118.13823.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6118 652..13027 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6118.13823.1 ID=prot_H-paniculata_contig6118.13823.1|Name=mRNA_H-paniculata_contig6118.13823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=639bp
MADSACVTIGGQSEQALGIGEDDGRQSDVEHADFDELLQSNVLDTLADFE
FSCGDLSALEPDAKAVCSSGGIRRRTFAASQTNALLTGAWEPTSGAYSHA
EQQPSAQPISHAAQQQQPRHNSSLADLVMGAGMECETTSAGGGRGGHESS
DLMIIQQSQQQQEHHKPSLVCGGGSPSSGDPSQRSSSPVFCGHGAQLDKV
PPGVAVAASAAAVGRDDGNSSSTQPQFNGVLRGKKRKSPGMGGGGKRALN
PERMERKATREKRRREEVNEKFEQLLTVLEEAEATSGLEPPAPEDGQHAN
ACINGRRVEVLHRTISVLRKLLHDRRQRTHHLVNAPAPICFEQPSSLKKQ
PPNPSPSPPSFCDGHGHNAIAAAIPPSDVATPQRPAGGASSEASPSVTTS
GLTSSRSSESITLPEPTAQGHVVVPVQPPHGGHPHAHSTSMPVPTGFAMA
YHPGMPMPPGAVSIPAGATGHMAAAAAAGVTGMHPNMQGRHAQPFFIAVP
MFMPPGQGMGGTGSAASAEASGESAPPVAPVAPMPAVPSPVPPPAAAVTV
AAQPSAASTSILAADEKSPCEGKAGFVGALTPMAGVPDVSTNVTLGKPSW
PMPGGVGFPPMMLQMPQFVTQALTAQDGDEKVTHAMCA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR036638	HLH_DNA-bd_sf