mRNA_H-paniculata_contig61123.13820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61123.13820.1
Unique NamemRNA_H-paniculata_contig61123.13820.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit n=72 Tax=Phaeophyceae TaxID=2870 RepID=NDUS2_PYLLI)

HSP 1 Score: 402 bits (1033), Expect = 9.060e-139
Identity = 193/203 (95.07%), Postives = 199/203 (98.03%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSG+RWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLN MP+GSVK+DDAKISPPSR+EVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVS  S+RPYRCKIKAPGF+HLQGLNFMA SHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNKMPRGSVKIDDAKISPPSRSEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A0U1WNP6_SARFS (NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxID=3009 RepID=A0A0U1WNP6_SARFS)

HSP 1 Score: 385 bits (990), Expect = 3.100e-132
Identity = 182/203 (89.66%), Postives = 195/203 (96.06%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLTDNRIWQERLVDIGVV+A++A++WGFSGVMLRGSGVRWDLRKNEPYEIYSDL F+GVVGKTGDCYDRYLAR+EEMRQSLSII+QC+NNMP+GSVKVDD KI PPSR E+KQ+MESLIHHFKLYTEGV VP GETYTATEAPKGEFGVYLVSD SNRPYRCKIKAPGF+HLQGLNFMA SHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTDNRIWQERLVDIGVVTAEDAVNWGFSGVMLRGSGVRWDLRKNEPYEIYSDLRFKGVVGKTGDCYDRYLARIEEMRQSLSIIHQCINNMPRGSVKVDDTKICPPSRCEMKQNMESLIHHFKLYTEGVSVPFGETYTATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQGLNFMAKSHMLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A4D6E538_9PHAE (NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E538_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 1.450e-130
Identity = 179/203 (88.18%), Postives = 195/203 (96.06%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLTDNRIWQERLVDIGVVS+QEAIDWGFSGVMLRGSGVRWDLRKNEPY+ YS+L+FQGVVGK GDCYDRYL R++EMRQSLSIIYQCLN +P+GS+KVDD+KI+PPSR +VKQSMESLIHHFKLYTEGV VP+GETYTATEAPKGEFGVYLVSD SNRPYRCKIKAPGF+HLQ LNFM++SHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTDNRIWQERLVDIGVVSSQEAIDWGFSGVMLRGSGVRWDLRKNEPYDAYSELSFQGVVGKMGDCYDRYLVRIDEMRQSLSIIYQCLNKIPEGSIKVDDSKITPPSRADVKQSMESLIHHFKLYTEGVTVPSGETYTATEAPKGEFGVYLVSDGSNRPYRCKIKAPGFSHLQALNFMSNSHMLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A8F0K0U0_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0U0_9PHAE)

HSP 1 Score: 380 bits (977), Expect = 2.920e-130
Identity = 181/203 (89.16%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLTDNRIWQERLVDIG V+AQ+AI+WGFSGVMLRGSGV WDLRKNEPYE YS+LNFQ  VGKTGDCYDRYL R+EEMRQSLS+IYQCLNNMP+GS+K +DAKISPPSRTEVKQ+MESLIHHFKLYTEGV VPAGETYTATEAPKGEFGVYLVSD S RPYRCKIKAPGFAHLQGLNFM  SHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTDNRIWQERLVDIGRVTAQQAINWGFSGVMLRGSGVLWDLRKNEPYETYSELNFQAAVGKTGDCYDRYLVRIEEMRQSLSLIYQCLNNMPRGSIKSEDAKISPPSRTEVKQNMESLIHHFKLYTEGVVVPAGETYTATEAPKGEFGVYLVSDGSPRPYRCKIKAPGFAHLQGLNFMTKSHMLADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A7S6UA25_9STRA (Nad7 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA25_9STRA)

HSP 1 Score: 352 bits (903), Expect = 5.020e-119
Identity = 164/203 (80.79%), Postives = 184/203 (90.64%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT NRIW++RLVDIG VSA EA+DWGFSGVMLRGSG+ WDLRK++PYE+Y  L+F   +G  GDCYDRYL RVEEMRQSL IIYQCLN MPKGSVK+DDAKISPP+R+++KQSMESLIHHFKLY+EGV VPAGETYTATEAPKGEFGVYL+S+ SNRPYRCKIKAPGF HLQ L+FM+ SHM+ADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTANRIWKQRLVDIGRVSAAEALDWGFSGVMLRGSGISWDLRKHQPYEVYEKLDFHIPIGTNGDCYDRYLLRVEEMRQSLGIIYQCLNQMPKGSVKIDDAKISPPTRSQMKQSMESLIHHFKLYSEGVLVPAGETYTATEAPKGEFGVYLISNGSNRPYRCKIKAPGFGHLQALDFMSKSHMVADVVTIIGTQDIVFGEVDR 398
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BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A4Y5T7J7_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7J7_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 7.710e-116
Identity = 160/203 (78.82%), Postives = 181/203 (89.16%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT N IW+ RLVDIGVV+A++A+DWGFSGVMLRGSG+ WDLRKN+PYEIY  + F   VG  GDC+DRY  RV+EMRQSLSI++QCLNN+P GS+KVDDAKISPPSR +VKQSME+LIHHFKLYTEG  VP GETYTATEAPKGEFGVYL+S+ +NRPYRCKIKAPGF HLQ LNFM++SHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTSNPIWKLRLVDIGVVTAKQAVDWGFSGVMLRGSGILWDLRKNQPYEIYPGIKFDVPVGIHGDCFDRYTVRVQEMRQSLSIVHQCLNNIPVGSIKVDDAKISPPSRADVKQSMEALIHHFKLYTEGTLVPVGETYTATEAPKGEFGVYLISNGTNRPYRCKIKAPGFGHLQALNFMSNSHMLADVVTIIGTQDIVFGEVDR 398
[Close]
BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: Q2TU97_DICDH (NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU97_DICDH)

HSP 1 Score: 341 bits (874), Expect = 1.260e-114
Identity = 158/203 (77.83%), Postives = 181/203 (89.16%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT N IW+ RLVDIGVV+A+EA+DWGFSGVMLRGSG+ WDLRKN+PYE+Y ++ F   VG  GDC+DRY  R++EMRQSL+I+YQCLN MP+GSVKVDD KISPPSR E+KQ+ME+LIHHFKLYTEGV VP GETY ATEAPKGEFGVYL+S+ +NRPYRCKIKAPGF+HLQ LN M+SSHMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTSNPIWKLRLVDIGVVTAREAVDWGFSGVMLRGSGLIWDLRKNQPYEVYPEIKFDIPVGVNGDCFDRYTIRIQEMRQSLNILYQCLNKMPQGSVKVDDYKISPPSRVELKQNMEALIHHFKLYTEGVLVPVGETYIATEAPKGEFGVYLISNGTNRPYRCKIKAPGFSHLQALNLMSSSHMLADVVTIIGTQDIVFGEVDR 398
[Close]
BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: F1DPM6_COCSC (NADH dehydrogenase subunit 7 n=4 Tax=Trebouxiophyceae TaxID=75966 RepID=F1DPM6_COCSC)

HSP 1 Score: 338 bits (867), Expect = 1.450e-113
Identity = 156/203 (76.85%), Postives = 182/203 (89.66%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT+NRIW++RLVD+GVV+A +A+DWGFSGVMLRGSG+ WDLRK +PY++YS ++FQ  VG  GDCYDRYL RVEEMRQSL +I QCL  MP+G +K DD KI+PPSR+++KQSMESLIHHFKLYTEG  VPAGETYTA EAPKGEFGV+LVS+ +NRPYRCKI+APGFAHLQGL+FMA +HMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTNNRIWKQRLVDVGVVTADQALDWGFSGVMLRGSGIGWDLRKTQPYDVYSKMDFQVPVGSRGDCYDRYLIRVEEMRQSLRMIMQCLQEMPQGLIKSDDRKITPPSRSQMKQSMESLIHHFKLYTEGFAVPAGETYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 398
[Close]
BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: D3IUK8_HETAK (NADH dehydrogenase subunit 7 n=5 Tax=Chattonellaceae TaxID=658124 RepID=D3IUK8_HETAK)

HSP 1 Score: 337 bits (863), Expect = 5.690e-113
Identity = 156/203 (76.85%), Postives = 179/203 (88.18%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT NRIW++RLVDIG+VS ++A DWGFSGVMLRGS + WDLRKN+PYE+Y  + F+  VGK GDCYDRYL R++EMR+SL II QCLNNMP G VK+DD KI+ PSR+++KQSMESLIHHFKLYTEG+ VPAGETYTATEAPKGEFGVYLVS+ +NRPYRCKIKAPGF HLQ L+FMA  HM+ADVVTIIGTQDIVFGEVDR
Sbjct:  195 MLTSNRIWKQRLVDIGIVSKKDACDWGFSGVMLRGSTIPWDLRKNQPYEVYDKMEFEVPVGKNGDCYDRYLIRMQEMRESLKIIQQCLNNMPLGPVKLDDHKITSPSRSDMKQSMESLIHHFKLYTEGMVVPAGETYTATEAPKGEFGVYLVSNGTNRPYRCKIKAPGFGHLQALDFMAKGHMVADVVTIIGTQDIVFGEVDR 397
[Close]
BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Match: A0A097P5X6_CHLVA (NADH dehydrogenase subunit 7 n=8 Tax=cellular organisms TaxID=131567 RepID=A0A097P5X6_CHLVA)

HSP 1 Score: 337 bits (863), Expect = 5.870e-113
Identity = 153/203 (75.37%), Postives = 181/203 (89.16%), Query Frame = 1 
Query:    1 MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 609
            MLT+NRIW++RLVDIGVV+A +A+DWGFSGVM+R SG+ WDLRK +PY++Y+ +NF   VG  GDCYDRYL R+EEMRQSL II QCLN MP+G +K DD KI+PPSR+++KQSMESLIHHFKLYTEG  VPAGETYTA EAPKGEFGVYLVS+ +N+PYRCKI+APGFAHLQG++FM+ +HMLADVVTIIGTQDIVFGEVDR
Sbjct:  196 MLTNNRIWKQRLVDIGVVTADQALDWGFSGVMMRASGISWDLRKTQPYDVYNRMNFDIPVGTRGDCYDRYLIRIEEMRQSLRIIMQCLNEMPQGMIKTDDRKITPPSRSQMKQSMESLIHHFKLYTEGFVVPAGETYTAVEAPKGEFGVYLVSNGTNKPYRCKIRAPGFAHLQGIDFMSRNHMLADVVTIIGTQDIVFGEVDR 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61123.13820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NDUS2_PYLLI9.060e-13995.07NADH-ubiquinone oxidoreductase 49 kDa subunit n=72... [more]
A0A0U1WNP6_SARFS3.100e-13289.66NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxI... [more]
A0A4D6E538_9PHAE1.450e-13088.18NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae... [more]
A0A8F0K0U0_9PHAE2.920e-13089.16NADH dehydrogenase subunit 7 n=1 Tax=Analipus japo... [more]
A0A7S6UA25_9STRA5.020e-11980.79Nad7 n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
A0A4Y5T7J7_9PHAE7.710e-11678.82NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris ... [more]
Q2TU97_DICDH1.260e-11477.83NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dich... [more]
F1DPM6_COCSC1.450e-11376.85NADH dehydrogenase subunit 7 n=4 Tax=Trebouxiophyc... [more]
D3IUK8_HETAK5.690e-11376.85NADH dehydrogenase subunit 7 n=5 Tax=Chattonellace... [more]
A0A097P5X6_CHLVA5.870e-11375.37NADH dehydrogenase subunit 7 n=8 Tax=cellular orga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61123contigH-paniculata_contig61123:226..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score327.0
Seed ortholog evalue6.2e-87
Seed eggNOG ortholog7918.ENSLOCP00000001100
Preferred nameNDUFS2
KEGG rclassRC00061
KEGG koko:K03935
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042493,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (ubiquinone) Fe-S protein 2
EggNOG OGs38E8K@33154,3BADS@33208,3CS8G@33213,488M0@7711,48YB9@7742,49SIC@7898,COG0649@1,KOG2870@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size612
Cds size612
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930687.576279-CDS-H-paniculata_contig61123:225..8371622930687.576279-CDS-H-paniculata_contig61123:225..837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61123 226..837 +
1691481406.5403996-CDS-H-paniculata_contig61123:225..8371691481406.5403996-CDS-H-paniculata_contig61123:225..837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61123 226..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61123.13820.1prot_H-paniculata_contig61123.13820.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61123 226..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61123.13820.1

>prot_H-paniculata_contig61123.13820.1 ID=prot_H-paniculata_contig61123.13820.1|Name=mRNA_H-paniculata_contig61123.13820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGVRWDLRKNEPYEI
YSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNMPKGSVKVDD
AKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVY
LVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGE
VDR*
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mRNA from alignment at H-paniculata_contig61123:226..837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61123.13820.1 ID=mRNA_H-paniculata_contig61123.13820.1|Name=mRNA_H-paniculata_contig61123.13820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig61123:226..837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAACAGATAACCGTATATGGCAAGAAAGGTTAGTTGATATTGGTGT
TGTAAGCGCACAAGAAGCTATTGATTGGGGATTTTCTGGAGTTATGCTTA
GAGGTTCAGGTGTTCGTTGGGATTTGCGTAAGAATGAACCTTATGAGATT
TATTCAGATCTTAATTTTCAAGGGGTAGTCGGTAAAACAGGTGATTGTTA
TGATCGTTATTTAGCTAGAGTCGAAGAAATGAGACAATCTTTAAGCATCA
TATATCAGTGTTTAAATAACATGCCGAAAGGGAGTGTTAAAGTAGATGAC
GCTAAAATTAGTCCACCATCTCGAACAGAAGTGAAACAAAGCATGGAATC
GTTAATACATCATTTTAAATTATATACTGAAGGTGTTTTTGTACCTGCTG
GTGAAACTTATACGGCAACTGAAGCACCTAAAGGAGAGTTCGGTGTTTAT
TTAGTTTCTGACAGTAGTAACAGGCCGTATAGATGTAAAATAAAAGCACC
AGGTTTTGCTCATCTTCAGGGTTTAAATTTTATGGCCAGTTCTCATATGT
TAGCTGATGTTGTTACTATTATAGGTACTCAAGATATTGTTTTTGGTGAG
GTTGATCGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig61123:226..837+

>mRNA_H-paniculata_contig61123.13820.1 ID=mRNA_H-paniculata_contig61123.13820.1|Name=mRNA_H-paniculata_contig61123.13820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig61123:226..837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAACAGATAACCGTATATGGCAAGAAAGGTTAGTTGATATTGGTGT
TGTAAGCGCACAAGAAGCTATTGATTGGGGATTTTCTGGAGTTATGCTTA
GAGGTTCAGGTGTTCGTTGGGATTTGCGTAAGAATGAACCTTATGAGATT
TATTCAGATCTTAATTTTCAAGGGGTAGTCGGTAAAACAGGTGATTGTTA
TGATCGTTATTTAGCTAGAGTCGAAGAAATGAGACAATCTTTAAGCATCA
TATATCAGTGTTTAAATAACATGCCGAAAGGGAGTGTTAAAGTAGATGAC
GCTAAAATTAGTCCACCATCTCGAACAGAAGTGAAACAAAGCATGGAATC
GTTAATACATCATTTTAAATTATATACTGAAGGTGTTTTTGTACCTGCTG
GTGAAACTTATACGGCAACTGAAGCACCTAAAGGAGAGTTCGGTGTTTAT
TTAGTTTCTGACAGTAGTAACAGGCCGTATAGATGTAAAATAAAAGCACC
AGGTTTTGCTCATCTTCAGGGTTTAAATTTTATGGCCAGTTCTCATATGT
TAGCTGATGTTGTTACTATTATAGGTACTCAAGATATTGTTTTTGGTGAG
GTTGATCGCTAAATGTTAACAGATAACCGTATATGGCAAGAAAGGTTAGT
TGATATTGGTGTTGTAAGCGCACAAGAAGCTATTGATTGGGGATTTTCTG
GAGTTATGCTTAGAGGTTCAGGTGTTCGTTGGGATTTGCGTAAGAATGAA
CCTTATGAGATTTATTCAGATCTTAATTTTCAAGGGGTAGTCGGTAAAAC
AGGTGATTGTTATGATCGTTATTTAGCTAGAGTCGAAGAAATGAGACAAT
CTTTAAGCATCATATATCAGTGTTTAAATAACATGCCGAAAGGGAGTGTT
AAAGTAGATGACGCTAAAATTAGTCCACCATCTCGAACAGAAGTGAAACA
AAGCATGGAATCGTTAATACATCATTTTAAATTATATACTGAAGGTGTTT
TTGTACCTGCTGGTGAAACTTATACGGCAACTGAAGCACCTAAAGGAGAG
TTCGGTGTTTATTTAGTTTCTGACAGTAGTAACAGGCCGTATAGATGTAA
AATAAAAGCACCAGGTTTTGCTCATCTTCAGGGTTTAAATTTTATGGCCA
GTTCTCATATGTTAGCTGATGTTGTTACTATTATAGGTACTCAAGATATT
GTTTTTGGTGAGGTTGATCGCTAA
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