prot_H-paniculata_contig61107.13816.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig61107.13816.1
Unique Nameprot_H-paniculata_contig61107.13816.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length104
Homology
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 89.4 bits (220), Expect = 6.310e-20
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    3 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVER-KVKISAADRGRNDNSTEYRSMVGSLMYASTGTRPDIAYAI 104
            K N++++F M D G +  + G+ VRRDR  G I I Q +Y+R VL+R G DECR + TP+E  K     A   +  N   Y++ +GSL+YAS GTRPD++Y++
Sbjct:   75 KKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSV 177          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 92.8 bits (229), Expect = 8.630e-20
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    3 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 104
            K  +S  F MKD+G+  R+ GI+++RDR  G + +SQ SY+ +V+KR    E + V+TP+    K+SA         TE   Y S VGS+MYA  GTRPDIAYAI
Sbjct: 1054 KSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAI 1158          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A401GDC8_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GDC8_9APHY)

HSP 1 Score: 89.4 bits (220), Expect = 9.280e-20
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDN---STEYRSMVGSLMYASTGTRPDIAYAI 104
            E KH++   F + DLG   ++ GIE+ RDR  G I ISQ  YI+ +LKR+  +    V  P++  V  +A D     +   +  Y SMVGSLMYA+ GTRPDI+YA+
Sbjct:  112 ELKHDLQDLFEVMDLGEPQKIIGIEIERDREVGKIQISQQHYIKSILKRYQLENANAVGMPLDLNVAFTAEDENEEVDDHLAGGYASMVGSLMYAAVGTRPDISYAV 218          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-19
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---------YRSMVGSLMYASTGTRPDIAYA 103
            E K  ++  F+M+DLG    V GI++RRDR    I +SQ  YI  VLKR G ++C+ V TP+  + +++A D   ND  TE         Y ++VGSLMYA  GTRPDIAYA
Sbjct: 1214 EIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYA 1325          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A)

HSP 1 Score: 91.3 bits (225), Expect = 1.730e-19
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 0
Query:    3 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRND--NSTEYRSMVGSLMYASTGTRPDIAYAI 104
            K+++S +F MKDLG L    G+ + RDR NG + + Q  YI ++L ++G   C+ V TP++ K K+S  D   +   +S  Y+ ++GSL+Y S  TRPDI+Y++
Sbjct:  103 KNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSV 206          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 91.3 bits (225), Expect = 2.990e-19
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    6 ISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKV--KISAADRGRNDNSTEYRSMVGSLMYASTGTRPDIAYAI 104
            + ++  +KDLG    + G+EV+RD+  GTI+ISQ  YI EVLKR+G + C+ V TP+E  +  + S + R        Y+S++GSLMY   GTRPDIA+A+
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAV 1147          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 90.5 bits (223), Expect = 3.530e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 104
            + K  +S  F MKD+G   R+ GI++RRDR  G + +SQ SY+ +V+++    E + V+TP+    K+SA         TE   Y S+VGS+MYA  GTRPDIAYAI
Sbjct:  116 KLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAI 222          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-19
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 104
            + K  +S  F MKDLG+  R+ GI+++RDR  G + +SQ  Y+ +V+KR    E + V+TP+    K+SA         TE   Y S VGSLMYA  GTRPD+AYAI
Sbjct: 1057 KLKKVLSSEFEMKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDASECVDTEKVPYSSAVGSLMYAMVGTRPDLAYAI 1163          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 90.5 bits (223), Expect = 5.560e-19
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE------YRSMVGSLMYASTGTRPDIAYAI 104
            E K  +S  F MKDLG+  ++ G+E+RRDR  G +T+SQ  YI +VLKR     C+ + TP+    K+S+ +  +++   E      Y S VGSLMYA   TRPD+A+A+
Sbjct:  979 ELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAV 1088          
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 90.5 bits (223), Expect = 5.600e-19
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 0
Query:    1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDN---------STEYRSMVGSLMYASTGTRPDIAYAI 104
            E K  ++ +F+M+DLG    + GI +RRDRP   I +SQ  YI  VL R+G  +C+  +TP+   VK SA D   N           S  Y S++GS+MYA  GTRPDIAY +
Sbjct: 1194 EVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5XDS1_9CNID6.310e-2043.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3F7G4_NOCCA8.630e-2045.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GDC8_9APHY9.280e-2042.99Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A409WVI7_9AGAR1.180e-1945.54Integrase catalytic domain-containing protein (Fra... [more]
UPI001C35AD5A1.730e-1939.42Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A293MM55_ORNER2.990e-1944.55Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6D2KZJ0_9BRAS3.530e-1943.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2J1R0_9BRAS4.090e-1944.86Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A2U1MW82_ARTAN5.560e-1941.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VT18_TRAPU5.600e-1942.48Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..62
e-value: 4.5E-9
score: 36.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..103
NoneNo IPR availablePANTHERPTHR11439:SF253coord: 12..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61107contigH-paniculata_contig61107:497..886 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61107.13816.1mRNA_H-paniculata_contig61107.13816.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig61107 497..886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig61107.13816.1 ID=prot_H-paniculata_contig61107.13816.1|Name=mRNA_H-paniculata_contig61107.13816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRH
GFDECRGVHTPVERKVKISAADRGRNDNSTEYRSMVGSLMYASTGTRPDI
AYAI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like