mRNA_H-paniculata_contig6089.13786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6089.13786.1
Unique NamemRNA_H-paniculata_contig6089.13786.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6089.13786.1 vs. uniprot
Match: D7G8Z7_ECTSI (Similar to metalloprotease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 5.340e-20
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 2 
Query:  362 KVFTGELKWDRAAGMAETLKTITRAEVVELLDSYIMAEDKAKRMNVMVYGKNQQRPNIMSAESGDEKT-IELTPEGLQDFRESLPMQDTTWTPQQSVEAA 658
            +VF+G+LKWDRAA  AE LKTITR EV+ LL   ++  D AKR+NV+VYGKN  RP   S    DE T IEL PE LQ F  +L MQDTT TPQQ++  A
Sbjct:  101 EVFSGDLKWDRAAVKAELLKTITRQEVLALLGGEMLDGDGAKRLNVLVYGKNHPRPEHSSE---DETTAIELVPETLQAFTRTLAMQDTTVTPQQAIANA 197
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BLAST of mRNA_H-paniculata_contig6089.13786.1 vs. uniprot
Match: A0A6H5KRX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.300e-18
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  362 KVFTGELKWDRAAGMAETLKTITRAEVVELLDSYIMAEDKAKRMNVMVYGKNQQRPNIMSAESGDEKTIELTPEGLQDFRESLPMQDTTWTPQQSVEAA 658
            +VF+G+LKWDRAA  AE LKTITR EV++LL   ++  D AKR+NV+VYGKN  RP  +S +  +  TIEL PE LQ F  +L +QDTT TPQ+++  A
Sbjct: 1055 EVFSGDLKWDRAAVKAELLKTITRQEVLDLLGGEMLDGDGAKRLNVLVYGKNHPRPERISED--ETTTIELVPETLQTFTRTLAVQDTTVTPQEAIANA 1151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6089.13786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Z7_ECTSI5.340e-2058.00Similar to metalloprotease n=1 Tax=Ectocarpus sili... [more]
A0A6H5KRX7_9PHAE4.300e-1854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6089contigH-paniculata_contig6089:1157..5928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue5e-19
Seed eggNOG ortholog2880.D7G8Z7
KEGG koko:K01408
KEGG Pathwayko05010,map05010
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
EC3.4.24.56
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons3
Model size1716
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6089.13786.1prot_H-paniculata_contig6089.13786.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6089 2170..5648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930681.2103763-UTR-H-paniculata_contig6089:1156..21691622930681.2103763-UTR-H-paniculata_contig6089:1156..2169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6089 1157..2169 -
1691481403.7450824-UTR-H-paniculata_contig6089:1156..21691691481403.7450824-UTR-H-paniculata_contig6089:1156..2169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6089 1157..2169 -
1622930681.2702177-UTR-H-paniculata_contig6089:5648..59281622930681.2702177-UTR-H-paniculata_contig6089:5648..5928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6089 5649..5928 -
1691481403.783534-UTR-H-paniculata_contig6089:5648..59281691481403.783534-UTR-H-paniculata_contig6089:5648..5928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6089 5649..5928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930681.2249656-CDS-H-paniculata_contig6089:2169..23111622930681.2249656-CDS-H-paniculata_contig6089:2169..2311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 2170..2311 -
1691481403.7559903-CDS-H-paniculata_contig6089:2169..23111691481403.7559903-CDS-H-paniculata_contig6089:2169..2311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 2170..2311 -
1622930681.2369413-CDS-H-paniculata_contig6089:3040..31111622930681.2369413-CDS-H-paniculata_contig6089:3040..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 3041..3111 -
1691481403.7646022-CDS-H-paniculata_contig6089:3040..31111691481403.7646022-CDS-H-paniculata_contig6089:3040..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 3041..3111 -
1622930681.25302-CDS-H-paniculata_contig6089:5438..56481622930681.25302-CDS-H-paniculata_contig6089:5438..5648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 5439..5648 -
1691481403.7732148-CDS-H-paniculata_contig6089:5438..56481691481403.7732148-CDS-H-paniculata_contig6089:5438..5648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6089 5439..5648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6089.13786.1

>prot_H-paniculata_contig6089.13786.1 ID=prot_H-paniculata_contig6089.13786.1|Name=mRNA_H-paniculata_contig6089.13786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MMFVVFYRCFVVVVVVVVLLFVYLIGIKVFTGELKWDRAAGMAETLKTIT
RAEVVELLDSYIMAEDKAKRMNVMVYGKNQQRPNIMSAESGDEKTIELTP
EGLQDFRESLPMQDTTWTPQQSVEAAKQRSSSSSSSSSSI*
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mRNA from alignment at H-paniculata_contig6089:1157..5928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6089.13786.1 ID=mRNA_H-paniculata_contig6089.13786.1|Name=mRNA_H-paniculata_contig6089.13786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4772bp|location=Sequence derived from alignment at H-paniculata_contig6089:1157..5928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCCTCCCAAACTCCCGAACTCCCGTTTTGGCTTCCCGCCCAATTTT
TTTTTTTTAATGCCCCTCTCTGCCCCCTGTCCCTTTTTTTTTGTGTTTCG
ATTTTTTGTTGAAACATGCGGTACTCTTTGAAACATAAATTGGAATTGAA
ACCGGATGGTGACTGTTGATTTTTTCGACTCCCTTCCGCCAGTCCCCGCA
CTCCTTTCACCACTCCGGTTTTTTTTTTGTTTGTTTTTTTTCTCGTCTAG
TTACACTCGCGTTGCTTTTGTCATGATCCAATGATGTTTGTCGTTTTTTA
TCGTTGTTTTGTGGTGGTGGTGGTGGTGGTGGTGCTGTTGTTTGTTTATT
TGATTGGGATTAAGGTGTTCACCGGGGAATTGAAGTGGGATAGGGCGGCA
GGAATGGCGGAGACGCTGAAAACCATCACGCGCGCTGAAGTTGTAGAGCT
GCTGGACAGCTACATCATGGCAGAAGACAAGGCCAAACGGGTGAGGGGTG
TTACTGTACGGTAGACGGTATCATCACTGATCCGAGTCAGTTCGATCATT
CGTCCTCTTTGAGTGAAATGGTATTTTAAGGAGGCCAACCTTGTATTGGA
GTTCCGCAAGCAAACGAGGACCACCAGACAGACGAGGGGCGGCTGGCAGC
ATGTAGATGGAGCACTGTGCTGGTGGGATAGGTACAGAATAAATACACTC
AGTAGGTATTTATTACGCCGCACAAAAGCACGCCTCCTTGTCCACCCAAC
AGCCTAGTCTAATCCTCGATTTGAACACGCAAGTCGAGATTATGTCACGG
GGGCTGTCAGAGCTGGCTGGTTGAGATTGATGTTGGCCAAAGTCGACCGA
TTTGGTCTGCGCAAGGTAGCGTTTTATCAAAATCACTCCTCAGAATCGGC
GGGAAAAAGCGATTCTGACCGACGATCATGTCCGCATAAAATAGGGTGTG
TAAAAGAACACGTTGGCCGAAAATAGGCAAAGTTAGCCCGGCGTTAAGCG
GCCACTAACTCTGATACACAAAGCGGAATGCACTTGGGAACAGCGTATAT
GGATGGGTCTATCAGTCTTTAGCTTTCGAACGATTCCAAGTGCAGCCTTT
GAACAGACGTAGATCTGGAAATGTAATCTGCCGAAACACAAGCAACTTTA
GTCACGGCAGAGAGGAAGTATATATATATATACTCGCTCTGTCTCGAAAG
TATACTCAATTATGATTACAAAGGCACTTAATAACATATCAGATTTATTT
GATTATAATTTTTTTAATGGAATTATTCTACATGTTTTTTGGGGTTGAAA
ACCAATTTTTTGGGCCAAATAGTTGTTGAATTTTTAACACCAAAACACAC
GCCGTGAAAACAAGGACTCGGCCAAAAAAAAGTGCTTTTCTGTGACTTTT
TCCCATAGCACTCGGAAAAAAAATGTGGATTTTTTGGCGTTTTTCGGCCG
AGTGCTATTTTTCACGGCGTATGTTTTGGTGTCAACTAAAGGTAACTATT
TGACTTGATATTTTGGAGTTTCAATCGCAAAAACACGTACTGTAGGATTC
TAAGTTATAAGAAAACAAAACAATCGGAGATGGTTTTAAGTGCATCTCTA
ATCACAACATACTGTACTTGTGGGACACTACTAAAAGTCCCCCCCCCAAA
AGGGCCTTTTTTAGGCCGAGTGCGCTTTTGTCCAAGGTGCGTGTTTTGGT
GTTAAAAGTGTAAAACATTTGGCCCAAAAAATTGGTTTTCAACCCCAAAA
AACATGTAGAATAATTCCATTAAAAAAATAATAATCAAATATATCTGATA
TGTTATTAAGTACCTTCGTAATCGTAACTGAATATAATTATGATAAATAA
GTAAAAAATTCAATATAAAACGCCCAAACAAATGTCAACGTCTGGCTCCT
GCAGCGTTGCAAGCTAACTTCGCAGTGTGGCTTTTCAAGTCTTGGAGGTC
ATTGAATATTTATTACAATTGACGCGCTTTATAAGTTGTTTTGGATTTAC
CTGTTGTATTGCTTTTGTTCGAATCGCTCTTATGTCAAGTCTTGATCATC
CGTACAGTATGGTATGGTGAGCGCGTATCAGTATATTGACGTATCAGTAT
TTATTATTATTGCTTGTGCTGCCTGCCTCTTCGACCAGGCATCGTAAATC
TTTCAGTCTCGATGCCGACGGTATCTTTTGGACGTAGCTTTTAACTACCA
TGTGTTACTCCATTCTTGCTCTCCTCCCAACATGGTGCACCGTTCAGGGT
GAAGCTATCTAAACGCTTAAAATATTATTTAACATTTTCATCACCCCTTC
TCCCCCGCCTTGATTCGGTCAGTTTGCAAGTCCAGCAGCTTGAAGATACT
AAGGAAACCTCTCGATTTTGATGTTTACGGTTTATTCCCCGTATTTTGTC
CATTAATTGTAGCCTAGCTCCTGCTCCTAAAACAAATATTTTTTTAACTA
ACTCGGGCTAATTTTTACCCTCCCTAATTGTCAATTTGACACTTTGCTGA
TAATGACGGATGTATTTTACACAAGTGGAGGTTGAAGTTAGCTCAACAAC
CTCGACACGGGTACAAAGGAATCCCCCTGTGAGCCTTAGAGCTATGGTTA
TACTTACTGTGGCGAGTAGGCCGGCTGACGTGAGGATGAAAACGTGGTGA
ATAACATGGCGGGGGTGGGGATGTTGGGGATTTCCGCTCGCTATCCATGT
GGAAATAATTTCATGTTTTATGTACAATTCACAAAAGAATATCCCATCCA
TCCTCTCCGCCCGCCCATCGTGCTCGCTCACTCACTCGCTGCTTGTCTTG
TCTTGCCTTGCCTCCAGATGAATGTGATGGTGTATGGCAAGAACCAGCAG
CGTCCAAACATTATGTCGGCGGAGAGCGGCGATGAGAAGTGAGTCCCTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGCCTGCTCTGTCAAAACGTTGGCTTGGTTT
CTCACACGAACGGTGATGAGCTGTGGTAGTGCTACTGATAATTGGCGTCA
GCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTTTGGACAGTTTA
TATGTACCTGTTATTGTCTAATACCTCATGAATACATGTATGTTAGATCG
TGTACTTAACGTCATCGTCTAGTTTAAGGGGGGGGGGATGGTATCGAAAG
GATGGGGAGGAGGGGGAAGAGTATAAGAGGCAGGCAGGGGTGCATAGTCA
TCATTTCGGAACAGTTTTTTCAATTCTGTACTCGAGTAAATCCTAAACGA
CGAATCTTCAGGCGAGCGCAGGGGAACCCGTGGTTTGAGGACAAGGCAGC
GCCAATTGCACAGGTGTAGGTAGGTAGCCGTGGACGTGGTGCACTTTTAC
TGATACTCGACGTACCACATCTATCGTTTGAATGTTCTTCATTCACGGGA
AAGTAGTGAAAGTGTGGGGGACTGTAAAAGAGACGAAGAATAGGTTGTAG
AAATTACACGCGGCGTATAAGAGAACCAACCGTGAGTGAAGACTCGCGAC
AATAGTTGCTCAATGGTGCAATCCTTCACTTATTTTTTTGTGTCTTGCGT
GTATTTCTGACATTTAGAACAATCGAGTTGACCCCGGAGGGACTGCAGGA
CTTCAGAGAATCGCTGCCGATGCAAGACACGACTTGGACACCCCAACAAA
GCGTCGAAGCCGCAAAGCAACGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCATCTGAAGGGACTATGGATAACGACCGCTTTCAAAAATAGCGGATAG
ATGAATTGTAGGTCTTGCAGGTTTCGCTGACGGTGCAGGGCGGGAGTCGT
TCGTTTCCTCATCGGAATACGTACGTGACAAGAACAGTTCCCCCTACTCC
TCTCTGTACTGTATCTATATGTAACTGCGCCATCTACAATACATGTCTGC
GCACGGGTTGTGTGCGGTGTTTTTGGGATGATTGCAGGGAGATAGCTTCT
CACTTTAGACAGAGACAATAGTAGTGAATCCTGACATATGCACCTGTGTT
GTTGTTACACGAGTGAATCGGTCAAGTCAGTATCTTGCTGCTGTCTAGAC
ACGCAAGATGCGGGAATCATGCACACGATAGCAGCCAACTGGGGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGTATTGCTTCCCGTGAGTGTCTGGGGTAC
AAGGGATCTGCAATGCTCGAGTTTTAGCTTGTAGTTTTGGGTGAGACAAG
GTGGCTGTGCATTGCTTTATGTATTTATTGTTGTGTGCGAGAGAGAGAGA
GAGCGAGAGAGCGAGACAGAAAGAGGGGTGTTTCCTCGTGCTAGCTATAT
ATCAAAATAGCACTGTCCGATAGACTCGAATCGGTCCCTCATATTGTTAG
ATGTAGTGTTTTGTGCTGGTCACTGTGGTTGTCGAGGAAAGCCTGTGTTT
ATCTTCAGAGGAGGAGGCGTGTACTTCACCAGTTGGTGTTGATAACAATA
TACTCCGTCGCAAAACCTCATCCACAGACGGGCTGCTCTCAAGAGTTGAT
ATCTATGCTGTATTGTTCAACTCGATAAGCTGCTTGCTCATCACGGTTGT
GGTTGGCCACTATTACACCACTCACTGCCGTCGGGGTCTACCGTAAACTT
ACGAATTGCGAATTCCCGTCTCCTGTAGTATCTACCATCTGTCGTCCCCC
CTCACTCGCTCAACGATTACGAAACACAAGTCAGCGAATATATTTCAGGG
TAGGAGGTCTATCATAGCACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6089:1157..5928-

>mRNA_H-paniculata_contig6089.13786.1 ID=mRNA_H-paniculata_contig6089.13786.1|Name=mRNA_H-paniculata_contig6089.13786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig6089:1157..5928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTTTGTCGTTTTTTATCGTTGTTTTGTGGTGGTGGTGGTGGTGGT
GGTGCTGTTGTTTGTTTATTTGATTGGGATTAAGGTGTTCACCGGGGAAT
TGAAGTGGGATAGGGCGGCAGGAATGGCGGAGACGCTGAAAACCATCACG
CGCGCTGAAGTTGTAGAGCTGCTGGACAGCTACATCATGGCAGAAGACAA
GGCCAAACGGATGATGTTTGTCGTTTTTTATCGTTGTTTTGTGGTGGTGG
TGGTGGTGGTGGTGCTGTTGTTTGTTTATTTGATTGGGATTAAGGTGTTC
ACCGGGGAATTGAAGTGGGATAGGGCGGCAGGAATGGCGGAGACGCTGAA
AACCATCACGCGCGCTGAAGTTGTAGAGCTGCTGGACAGCTACATCATGG
CAGAAGACAAGGCCAAACGGATGAATGTGATGGTGTATGGCAAGAACCAG
CAGCGTCCAAACATTATGTCGGCGGAGAGCGGCGATGAGAAATGAATGTG
ATGGTGTATGGCAAGAACCAGCAGCGTCCAAACATTATGTCGGCGGAGAG
CGGCGATGAGAAAACAATCGAGTTGACCCCGGAGGGACTGCAGGACTTCA
GAGAATCGCTGCCGATGCAAGACACGACTTGGACACCCCAACAAAGCGTC
GAAGCCGCAAAGCAACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT
CTGAAACAATCGAGTTGACCCCGGAGGGACTGCAGGACTTCAGAGAATCG
CTGCCGATGCAAGACACGACTTGGACACCCCAACAAAGCGTCGAAGCCGC
AAAGCAACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTGA
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