mRNA_H-paniculata_contig60773.13768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60773.13768.1
Unique NamemRNA_H-paniculata_contig60773.13768.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60773.13768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60773contigH-paniculata_contig60773:237..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60773.13768.1prot_H-paniculata_contig60773.13768.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60773 365..721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930679.0844648-UTR-H-paniculata_contig60773:236..3641622930679.0844648-UTR-H-paniculata_contig60773:236..364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60773 237..364 +
1691481402.7769978-UTR-H-paniculata_contig60773:236..3641691481402.7769978-UTR-H-paniculata_contig60773:236..364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60773 237..364 +
1622930679.1321628-UTR-H-paniculata_contig60773:721..8111622930679.1321628-UTR-H-paniculata_contig60773:721..811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60773 722..811 +
1691481402.7974906-UTR-H-paniculata_contig60773:721..8111691481402.7974906-UTR-H-paniculata_contig60773:721..811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60773 722..811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930679.1025238-CDS-H-paniculata_contig60773:364..7211622930679.1025238-CDS-H-paniculata_contig60773:364..721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60773 365..721 +
1691481402.7868867-CDS-H-paniculata_contig60773:364..7211691481402.7868867-CDS-H-paniculata_contig60773:364..721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60773 365..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60773.13768.1

>prot_H-paniculata_contig60773.13768.1 ID=prot_H-paniculata_contig60773.13768.1|Name=mRNA_H-paniculata_contig60773.13768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MAPFRIKSRLNQNTLSGATHTLYCTCKLMQRRWGLHHHNTHDNFSTLPSE
IKLISRIHRMLYTTMLPTALANLLVPSHSNITNVCMAKRRFSHYFATLGI
PMVGYGKFCESGYYRLSK*
back to top

mRNA from alignment at H-paniculata_contig60773:237..811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60773.13768.1 ID=mRNA_H-paniculata_contig60773.13768.1|Name=mRNA_H-paniculata_contig60773.13768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig60773:237..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTCTCTTATAAATTCAAACTCAAGAATAGTTTTGACAATTTTCATGGT
GCGAAAATGCCGTTTTCATCAATTATAAATTGGCTGATTCAAGCTAACAG
TCATCCATAAATCTCATTCTCCGTTCACATGGCCCCCTTCAGGATAAAAT
CGCGTCTCAACCAAAATACATTGTCTGGGGCGACGCACACCCTTTATTGT
ACTTGCAAACTAATGCAACGGAGATGGGGTCTGCACCACCATAATACGCA
TGACAATTTTTCAACGCTGCCGAGTGAAATTAAACTGATCTCACGCATCC
ACCGAATGCTGTACACTACAATGCTACCTACAGCACTCGCAAACCTGCTG
GTGCCATCCCACTCCAACATCACAAACGTATGCATGGCGAAGAGGCGTTT
CTCCCACTATTTCGCCACACTTGGGATTCCTATGGTGGGATATGGAAAAT
TTTGTGAAAGCGGATATTATCGATTATCCAAGTGAAAAATCCCTTTGACC
ACCTCTTAGGCCACTTCTTATGGTGAGACATGAATTTTTTTGAAAAGTGG
ATATTTTTAATTATACAGTGAAAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig60773:237..811+

>mRNA_H-paniculata_contig60773.13768.1 ID=mRNA_H-paniculata_contig60773.13768.1|Name=mRNA_H-paniculata_contig60773.13768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig60773:237..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCCCTTCAGGATAAAATCGCGTCTCAACCAAAATACATTGTCTGG
GGCGACGCACACCCTTTATTGTACTTGCAAACTAATGCAACGGAGATGGG
GTCTGCACCACCATAATACGCATGACAATTTTTCAACGCTGCCGAGTGAA
ATTAAACTGATCTCACGCATCCACCGAATGCTGTACACTACAATGCTACC
TACAGCACTCGCAAACCTGCTGGTGCCATCCCACTCCAACATCACAAACG
TATGCATGGCGAAGAGGCGTTTCTCCCACTATTTCGCCACACTTGGGATT
CCTATGGTGGGATATGGAAAATTTTGTGAAAGCGGATATTATCGATTATC
CAAGTGAATGGCCCCCTTCAGGATAAAATCGCGTCTCAACCAAAATACAT
TGTCTGGGGCGACGCACACCCTTTATTGTACTTGCAAACTAATGCAACGG
AGATGGGGTCTGCACCACCATAATACGCATGACAATTTTTCAACGCTGCC
GAGTGAAATTAAACTGATCTCACGCATCCACCGAATGCTGTACACTACAA
TGCTACCTACAGCACTCGCAAACCTGCTGGTGCCATCCCACTCCAACATC
ACAAACGTATGCATGGCGAAGAGGCGTTTCTCCCACTATTTCGCCACACT
TGGGATTCCTATGGTGGGATATGGAAAATTTTGTGAAAGCGGATATTATC
GATTATCCAAGTGA
back to top