mRNA_H-paniculata_contig60733.13761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60733.13761.1
Unique NamemRNA_H-paniculata_contig60733.13761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.760e-29
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D E +P    DV  SKC+ FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+   F+  PSAA +KTV+AVA ++   L H+D+
Sbjct:  102 SDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNLAHWDV 221
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.010e-26
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 221
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.990e-26
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFH 387
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+  + +  PSAA +KTV+AVA  +  +L H
Sbjct:  116 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVATVKGKKLAH 232
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.140e-26
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 1 
Query:    4 VTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +T  +  EP   +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G ++ FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:    1 MTSPIGHEP---SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDV 129
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.530e-25
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 1 
Query:    4 VTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +T  +  +P   +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  344 ITSPIGQKP---SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 472
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BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.990e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  452 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDV 571
[Close]
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.090e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  494 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 613
[Close]
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JI90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI90_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.330e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D E +P   D+V  SK + FWE A+++E GG+ KT TFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  451 SDVEAVPMTYDNVMCSKYKVFWEAAMKKETGGHDKTRTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSVCPSAASIKTVIAVATEKGKKLAHWDV 570
[Close]
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.760e-25
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   40 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            +D + +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  642 SDVKAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLGHWDV 761
[Close]
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.310e-24
Identity = 54/121 (44.63%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:   37 LNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 396
            L+D + +P    DV  SK   FWE AI+ E+ G+ KTGTFT V +  EG+K +  +++FS+K N+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  258 LSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE9.760e-2946.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.010e-2645.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE7.990e-2645.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE9.140e-2642.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.530e-2542.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.990e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE2.090e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI90_9PHAE3.330e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE9.760e-2544.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE1.310e-2444.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60733contigH-paniculata_contig60733:540..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.6
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog15368.BRADI0007S00200.2
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.4815717-CDS-H-paniculata_contig60733:539..9351622930678.4815717-CDS-H-paniculata_contig60733:539..935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60733 540..935 +
1691481402.566312-CDS-H-paniculata_contig60733:539..9351691481402.566312-CDS-H-paniculata_contig60733:539..935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60733 540..935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60733.13761.1prot_H-paniculata_contig60733.13761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60733 540..935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60733.13761.1

>prot_H-paniculata_contig60733.13761.1 ID=prot_H-paniculata_contig60733.13761.1|Name=mRNA_H-paniculata_contig60733.13761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MVTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTG
TFTVVNDSEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDY
DEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI
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mRNA from alignment at H-paniculata_contig60733:540..935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60733.13761.1 ID=mRNA_H-paniculata_contig60733.13761.1|Name=mRNA_H-paniculata_contig60733.13761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig60733:540..935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACAGGGGAGTTGAGTTTTGAACCTTTTTTGTTGAATGATGCGGA
ACCTTTACCTCGAAACATAGATGATGTGCAACGATCAAAATGCCGTCCAT
TTTGGGAGGAGGCGATTCAAAGGGAAATGGGGGGCTATGCTAAGACGGGA
ACTTTTACCGTAGTGAATGACAGTGAAGGAAAGAAACCGTTGAGGGGGCA
GTTCATTTTTTCGTATAAAACTAACGACATAGGGAATGTGGTAAAGTTCA
AGGCAAGACTAGTAGCTGATGGAAGGACACAGATCCAAGACATAGACTAC
GATGAAGTTTTTGCCCCTACCCCTTCCGCCGCTGTTGTAAAGACGGTGTT
AGCCGTAGCAGTACAGGAGGATTTACAACTATTTCATTTTGACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig60733:540..935+

>mRNA_H-paniculata_contig60733.13761.1 ID=mRNA_H-paniculata_contig60733.13761.1|Name=mRNA_H-paniculata_contig60733.13761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig60733:540..935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACAGGGGAGTTGAGTTTTGAACCTTTTTTGTTGAATGATGCGGA
ACCTTTACCTCGAAACATAGATGATGTGCAACGATCAAAATGCCGTCCAT
TTTGGGAGGAGGCGATTCAAAGGGAAATGGGGGGCTATGCTAAGACGGGA
ACTTTTACCGTAGTGAATGACAGTGAAGGAAAGAAACCGTTGAGGGGGCA
GTTCATTTTTTCGTATAAAACTAACGACATAGGGAATGTGGTAAAGTTCA
AGGCAAGACTAGTAGCTGATGGAAGGACACAGATCCAAGACATAGACTAC
GATGAAGTTTTTGCCCCTACCCCTTCCGCCGCTGTTGTAAAGACGGTGTT
AGCCGTAGCAGTACAGGAGGATTTACAACTATTTCATTTTGACATCATGG
TGACAGGGGAGTTGAGTTTTGAACCTTTTTTGTTGAATGATGCGGAACCT
TTACCTCGAAACATAGATGATGTGCAACGATCAAAATGCCGTCCATTTTG
GGAGGAGGCGATTCAAAGGGAAATGGGGGGCTATGCTAAGACGGGAACTT
TTACCGTAGTGAATGACAGTGAAGGAAAGAAACCGTTGAGGGGGCAGTTC
ATTTTTTCGTATAAAACTAACGACATAGGGAATGTGGTAAAGTTCAAGGC
AAGACTAGTAGCTGATGGAAGGACACAGATCCAAGACATAGACTACGATG
AAGTTTTTGCCCCTACCCCTTCCGCCGCTGTTGTAAAGACGGTGTTAGCC
GTAGCAGTACAGGAGGATTTACAACTATTTCATTTTGACATC
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