|
|
Homology
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI) HSP 1 Score: 271 bits (694), Expect = 9.340e-85 Identity = 130/179 (72.63%), Postives = 150/179 (83.80%), Query Frame = 1
Query: 19 AVKNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDKV 555
++K VVVMDG+SE + VRAGLRVY F+E+EGIGA++ PHRPP DLATFCYTSGTTGNPKGALLTH N IAD+AA+ M+T A S+DVYLSYLPLPH+FERM QV ++NVGAA+G FRGDPTLLVEDMQALRPT+M VPRV+NR HDKI+ G LAAGGLK KLFVKAC+ KV
Sbjct: 155 SLKTVVVMDGISERERREAVRAGLRVYAFAEVEGIGASHAHPHRPPGPNDLATFCYTSGTTGNPKGALLTHRNFIADSAAAELMETFNADSTDVYLSYLPLPHIFERMVQVAILNVGAAVGIFRGDPTLLVEDMQALRPTVMAAVPRVLNRLHDKIVQGMLAAGGLKTKLFVKACEAKV 333
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA) HSP 1 Score: 214 bits (546), Expect = 1.280e-62 Identity = 107/182 (58.79%), Postives = 129/182 (70.88%), Query Frame = 1
Query: 16 AAVKNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRK--PHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDKV 555
A + V MD V + A AGLRVY+ SELE IGAA+ + PHRPP+A D+ATFCYTSGTTGNPKGAL+ H N+++DAA M +VY SYLPLPH+FER QV + GA +GF+R +P LV DM ALRP +MP VPRV+NR HDKI HG LAAGGLKA+LFV+AC+ KV
Sbjct: 195 ATLAAAVTMDPVGPAARSAAEVAGLRVYLMSELEEIGAAHLEAWPHRPPSANDIATFCYTSGTTGNPKGALIRHVNMVSDAAGCYAMGLAHCTPDEVYFSYLPLPHIFERQVQVAVFCGGAPVGFWRNNPLELVADMAALRPVLMPAVPRVLNRLHDKITHGMLAAGGLKARLFVRACEAKV 376
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A7S1ZHK7_TRICV (Long-chain-fatty-acid--CoA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHK7_TRICV) HSP 1 Score: 185 bits (469), Expect = 3.130e-52 Identity = 92/181 (50.83%), Postives = 125/181 (69.06%), Query Frame = 1
Query: 25 KNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGA----ANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDT-LVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
+ V++DGV AG+ V F+++E +GA + R H PP+ D+ATFCYTSGTTGNPKGAL+TH N ++ AA M T + +++D +LSY+PLPH+FER+ Q + ++GA+IGFFRGDPTLL+ED+QA RPTIM PRV+N+ +DKI +G AAGG+K LF A K K
Sbjct: 93 RTAVLVDGVIPESASLAKSAGIDVVSFAKVEAVGAQSMSSGRHVHSPPSGADVATFCYTSGTTGNPKGALITHENFVSTVAA---MQTHMKGVTNDRHLSYMPLPHIFERILQAQIFSIGASIGFFRGDPTLLIEDLQACRPTIMIAAPRVLNKIYDKITNGINAAGGMKKALFDMALKAK 270
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: B7FQ93_PHATC (Precursor of ligase long chain acyl-coa ligase n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ93_PHATC) HSP 1 Score: 182 bits (461), Expect = 1.450e-50 Identity = 95/179 (53.07%), Postives = 120/179 (67.04%), Query Frame = 1
Query: 34 VVMDGVSESDMGAGVRAGLRVYIFSELEGIGAA----NRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVY--MDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
+++DGV+E + AGL V F+++E +GA HRPPA TD+A FCYTSGTTGNPKGALLTH N+++ A A Y + L A D +LSYLPL H+FER+ M GA++ FFRGDPTLL+EDMQA RPT+MPV PRV+N+ +DKI G + GGLK KLF A K
Sbjct: 182 ILVDGVTEDAAKMALEAGLEVLSFAKVEAVGAVCIAEKGHHHRPPAPTDVAAFCYTSGTTGNPKGALLTHENIMS-AIAGFYGAVGDLEAQPFDRHLSYLPLAHIFERIVSSQMFCAGASVAFFRGDPTLLIEDMQACRPTVMPVAPRVLNKIYDKIQAGISSVGGLKKKLFDAAVAAK 359
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A813ASW8_SYMMI (ACSL5 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813ASW8_SYMMI) HSP 1 Score: 178 bits (452), Expect = 5.250e-50 Identity = 85/174 (48.85%), Postives = 117/174 (67.24%), Query Frame = 1
Query: 31 VVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
V++M+ ++E AGL+ + E+E +GA PH P+ D+ TFCYTSGTTG+PKG LLTH NL + +A+ D L A D+++SYLPLPH+FER+ Q G++ GAAIGF++GD +VED+QALRPT P VPR++NR HD+++ G AGGLK LF +A K
Sbjct: 154 VILMEPLTEDLRSKASSAGLKAFSMEEVEKVGAEKPLPHLAPSPQDILTFCYTSGTTGDPKGVLLTHQNLCSAWSAASGRDALKAGDGDIHMSYLPLPHIFERLVQFGVILGGAAIGFYQGDTLKIVEDLQALRPTFFPSVPRLLNRVHDRLLAGINEAGGLKKALFERAFAAK 327
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A812KTL9_9DINO (LACS6 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KTL9_9DINO) HSP 1 Score: 170 bits (430), Expect = 7.870e-50 Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = 1
Query: 40 MDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
M+ ++E AG++ + E+E +GA H P+ D+ TFCYTSGTTG+PKG LLTH +L A + ++ L +++DV++SYLPLPH+FERM Q G++ GA IGF++GD +VED+QALRPTI P VPR++NR HD+++ G AGGLK LF K K
Sbjct: 1 MEPLTEDLRSKASAAGVKAFSMEEVEKVGADKPLEHLAPSPQDILTFCYTSGTTGDPKGVLLTHQSLCAAYSGAMGRKALQNVATDVHMSYLPLPHIFERMVQFGVIMAGACIGFYQGDTFKIVEDLQALRPTIFPSVPRLLNRVHDRLLAGVHEAGGLKKVLFEKGFAAK 171
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A0D2U208_CAPO3 (Acyl-CoA synthetase long-chain n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U208_CAPO3) HSP 1 Score: 178 bits (451), Expect = 1.020e-49 Identity = 91/177 (51.41%), Postives = 117/177 (66.10%), Query Frame = 1
Query: 25 KNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSD-VYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
K +V M VS+ + G+ + F+E+E GAA PHRPP+ D+AT CYTSGTTGNPKGA+LTHGN + D +D +A++ D VYLSYLPL H+FER+ Q G+ GA IGFFRGD LLVED+ ALRPTI VPR++NR +DK++ AGG+K LF +A K
Sbjct: 225 KEIVKMGSVSDKERADFKAVGVALLSFAEIEAEGAAKPVPHRPPSPEDVATICYTSGTTGNPKGAMLTHGNFVTDFRC---LDRFLALNKDDVYLSYLPLAHMFERIVQSGLWPAGAQIGFFRGDVKLLVEDIAALRPTIFCSVPRLLNRIYDKVVGTVTQAGGVKKFLFDQALASK 398
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A7S2SDD9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDD9_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.710e-49 Identity = 93/177 (52.54%), Postives = 117/177 (66.10%), Query Frame = 1
Query: 31 VVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAA--NRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDKV 555
VV ++ +E +G G+ + F ELE G R PH PP+ +ATFCYTSGTTG+PKGALLTH +LIA A+ L S D++ SYLPLPHVFER+ QV + GAA+GF++G+P LVED+QALRPTI P VPRV+NR +DKI+ G AAGG K LF +A KV
Sbjct: 177 VVCVEPFTEELVGTARSKGVALVSFDELESEGRRMLRRLPHSPPSPGCVATFCYTSGTTGSPKGALLTHQSLIASVASVEQAGILELDSEDIHFSYLPLPHVFERLVQVNIFASGAAVGFYQGNPLKLVEDLQALRPTIFPSVPRVLNRIYDKIMAGVAAAGGSKEALFRRALASKV 353
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A812U3Y9_9DINO (LACS7 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812U3Y9_9DINO) HSP 1 Score: 178 bits (452), Expect = 4.180e-49 Identity = 85/174 (48.85%), Postives = 117/174 (67.24%), Query Frame = 1
Query: 31 VVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
V++M+ ++E AGL+ + E+E +GA PH P+ D+ TFCYTSGTTG+PKG LLTH NL + +A+ D L A D+++SYLPLPH+FER+ Q G++ GAAIGF++GD +VED+QALRPT P VPR++NR HD+++ G AGGLK LF +A K
Sbjct: 154 VILMEPLTEDLRSKASSAGLKAFSMEEVEKVGAEKPLPHLAPSPQDILTFCYTSGTTGDPKGVLLTHQNLCSAWSAASGRDALKAGDGDIHMSYLPLPHIFERLVQFGVILGGAAIGFYQGDTLKIVEDLQALRPTFFPSVPRLLNRVHDRLLAGINEAGGLKKALFERAFAAK 327
BLAST of mRNA_H-paniculata_contig12167.1374.1 vs. uniprot
Match: A0A1Z5JLC6_FISSO (Long-chain-fatty-acid--CoA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLC6_FISSO) HSP 1 Score: 176 bits (447), Expect = 1.770e-48 Identity = 85/180 (47.22%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 25 KNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGA----ANRKPHRPPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDVYLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPVVPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDK 552
+ ++V+DGV+ RAGL + ++++E +GA HRPP D+ATFCYTSGTTG+PKGALLTH N+++ A + + D +LSYLPL H+FER + GA++ FFRGDPTLL+ED+QA RPT++P PRV+N+ +DKI G AAGG+K+KLF A K
Sbjct: 198 QTIIVIDGVTPEVADQAGRAGLEIISYAKVEAVGAHRIATQGHRHRPPQPGDIATFCYTSGTTGDPKGALLTHENMVSSMAGISQFPEVAIRTDDRHLSYLPLAHIFERTVISQVFLAGASVAFFRGDPTLLIEDLQACRPTLLPAAPRVLNKIYDKITTGVAAAGGMKSKLFNAALAAK 377
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 182.6 |
| Seed ortholog evalue | 1.7e-43 |
| Seed eggNOG ortholog | 2850.Phatr17720 |
| Preferred name | ACSL6 |
| KEGG rclass | RC00004,RC00014 |
| KEGG ko | ko:K01897 |
| KEGG TC | 4.C.1.1 |
| KEGG Reaction | R01280 |
| KEGG Pathway | ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 |
| KEGG Module | M00086 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000302,GO:0001101,GO:0001666,GO:0001676,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0003987,GO:0004467,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007405,GO:0007584,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009628,GO:0009629,GO:0009651,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010193,GO:0010243,GO:0010562,GO:0010565,GO:0010604,GO:0010646,GO:0010720,GO:0010746,GO:0010747,GO:0010866,GO:0010867,GO:0010876,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015645,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016053,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019221,GO:0019222,GO:0019432,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019867,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0030154,GO:0030182,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031667,GO:0031903,GO:0031956,GO:0031957,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0032000,GO:0032268,GO:0032270,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032890,GO:0032892,GO:0033036,GO:0033211,GO:0033559,GO:0033674,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034201,GO:0034284,GO:0034285,GO:0034641,GO:0034654,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0036109,GO:0036293,GO:0036314,GO:0042175,GO:0042178,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0042981,GO:0043067,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043270,GO:0043434,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0043651,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044539,GO:0045017,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045834,GO:0045859,GO:0045860,GO:0045923,GO:0045937,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046677,GO:0046889,GO:0046890,GO:0046942,GO:0046949,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051960,GO:0051962,GO:0055086,GO:0060255,GO:0060284,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070542,GO:0070723,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071466,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072330,GO:0072521,GO:0072522,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097305,GO:0098588,GO:0098805,GO:0098827,GO:0120035,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903793,GO:1903959,GO:1903961,GO:1905952,GO:1905954,GO:2000026,GO:2000191,GO:2000193,GO:2001233,GO:2001236 |
| EggNOG free text desc. | AMP-binding enzyme |
| EggNOG OGs | 2XERM@2836,COG1022@1,KOG1256@2759 |
| EC | 6.2.1.3 |
| COG Functional cat. | I |
| Best tax level | Bacillariophyta |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 |
| Exons | 4 |
| Model size | 555 |
| Cds size | 555 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12167.1374.1 >prot_H-paniculata_contig12167.1374.1 ID=prot_H-paniculata_contig12167.1374.1|Name=mRNA_H-paniculata_contig12167.1374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MQYIYAAVKNVVVMDGVSESDMGAGVRAGLRVYIFSELEGIGAANRKPHR
PPAATDLATFCYTSGTTGNPKGALLTHGNLIADAAASVYMDTLVAMSSDV
YLSYLPLPHVFERMCQVGMVNVGAAIGFFRGDPTLLVEDMQALRPTIMPV
VPRVMNRFHDKIIHGALAAGGLKAKLFVKACKDKV back to topmRNA from alignment at H-paniculata_contig12167:470..6978- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12167.1374.1 ID=mRNA_H-paniculata_contig12167.1374.1|Name=mRNA_H-paniculata_contig12167.1374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6509bp|location=Sequence derived from alignment at H-paniculata_contig12167:470..6978- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATATATATATGCTGCCGTGAAGAACGTGGTGGTGATGGACGGTGT
GAGCGAGAGCGACATGGGGGCGGGCGTCCGCGCGGGGCTGCGAGTGTACA
TATTCTCCGAGCTGGAAGGGATCGGAGCGGCAAACCGGAAGCCGCATCGC
CCCCCGGCCGCCACCGACCTCGCGACCTTCTGCTAGTGAGTTACTGAATC
GTCCCACGATGGGGGGGGGGGGGGCAGTTCGTCACTGGGAAGGAAGAAAA
TGACAATAGTTCGCAGCTCATTTTTGTTGAATTTTTTACGGTCCGTGGTG
CCTCTGACGCGAGCAGAGCTAACGCCGAACTCCAAACATCTAACCTAGCG
TTGACGCCGATGCCGTAGGTGTAATGTGCGTTGGCAATGAATGCTCTTGC
TCAAGTGCTCAAAATGGCGCCGTTGGCGTGGTTTGCTTGCAAGACGTTGT
TTGCTTGCAAGACGTTGTTTGCTTGCAAAACGTGTTTTGCGAGCGGCAAG
TTAGAACGGTTCCAGGTCAAAACGAACGTTCCGATGAGTTCATGGATCTC
GTAACATGCTGACTTTGTATTAATCCAGCATTGTTGTCCGATAATGAGAA
ATCTCTGTTGTAGTGGCGGGAGATAACTTGAGGGGAGTGGATAAGTAGAT
ATCTCGGGCCACACTCGTAGCTATGCTGTGTTTTACTTCTTGTTTCGACA
TGAAAAGTACCTGCAGGTTCTTTGCTTGCTTTCAGTGAACGGTGCAAGAA
ATAGTTTGGTCTTGAGAGCCCAAAGAGAGGGTCCCCTTGGAAAAAAGGTG
CGTACCCCCCGTCGTAGGATGATAGTCTTGTGCGTGCTCAGAGGGTTATA
TCAATATAAGAGCTGGTGTATACTCTTTAGAGTTGGGGATGGGAGAAAGG
GAGTAGATGGCTACGCGTCGGACTGACTTTAGTCCGATGGTAGATCTCAA
CGTTGCTGTTTACCGTTCTTGTAGCGTGATGGATTACTGTTAATATAGTG
GTAGATGTACGGCTACACCGGTAGAGTTTGTACCGGCTTGTCCTCGACCC
ACGGACTCGCTGCGCTCGCAGTGGGTCGTTACGCTTGTGTAGTAAAAATC
GTTTGACAGAACTTATTTGAGGAAAGAGTGAAATAAGTGATCAGGAACAG
CAACAACGATCACCTTGTTAATGCCCTCATTAAATAATAGGAATATTAAT
TACCTCAACACACAACACAAAATGTGAACTCTGCCGGAAACCCTACCATT
GCATTGACCTCCATCTCCCCGCACCGTGCCATGTTGTCCCGCGTCACCAC
GCCGATATGCCCCTAGCACGTCGGGCACGACGGGAAATCCGAAGGGAGCG
CTTTTGACGCACGGCAACCTTATAGCGGACGCCGCCGCATCAGTATATAT
GGACACCCTCGTCGCGATGTCGAGCGACGTGTACCTGTCCTACTTGCCCC
TGCCCCATGTGTTCGAGCGCATGTGCCAGGTGCGTTGAACATCTGTTGGT
AGTTGTCGAGCAATTCCTGTTGGCAAGTGGGCAAGTGATGCTCTATTACG
TTGCTTGTTTGGTTTTCGCATGTTAGTTCGTTTATCTGTTTTGCTTTTCA
AGTCTGTTGCGCTCTTTTATTCGTCGTTAGTTGGCTCGATTTTCTCTTCG
AAATTAGTGTTCGTTTTGTATGTATGAACTGTACCGGTATATTATTCACC
AACCTTGAAAACGTTCTGGAGGACGACAAGTTTCTGGGGGCTTTCAAAGA
TCCCTAAAACTATCTCCCTTACAACAACATCCCACCAAGGGTTTCCATCA
CCACTAGTGTTCAGGATATGAAAACCTTTCGACCCTATTCTAGAGGAAGA
CCAGAACCAAACTGAACACTAGACACGTAAAAGCAGCGTTTGAAGAGACG
TAGCCCTGCGGATGTACTGCACGTCTTTTCATTGACCAGTCATCCCATAA
GACGGTCGTCTTCGCATCGTGTTTCCCGTTCAGCGTCGCTGCAATAGGAC
CCCCTATTTCCGCTCTCAACTGTAAATCACTTGAATATATATATATATAT
GGGCATATAGGCTAGGTAACAAAATAATCGCGTTAGTAGGTACGAGTAGC
GTTGATATAAATTTATTGATGCTGGTGCAATTTTTCAGACGCAAAAAATG
CTTCGACTCTCATCGGCAAGGGTTCGCAAGTCAGATAGTGGTGTACCTGT
GTGAGGTGATGTCTATTTTAATTCACGATGTGTCCATACATGTTACACAT
GCGAATGATACGATTATACTCCCAAGTGTGTGTCCCCCCCGCCCGACGCG
ACACGATATCGTCTCCAGCATATGGTGGCCGAAGTCGAGCAACGGGGCGT
TGACCTCTGTACCAAATCTGTGCGTCCACCAACGGTAGCTGCAGTCAAGC
AGTAGGGGCGATCACATGCCCCTCGTAGCTCTGCTTTCAAATGCCTCTCC
GAGATAGATGAGAGGCAGAAAGTAGTCAACCAAGTGGTATGTGGTGGGGT
CCCACACCTGAGCGTTAGTTGGGCGGGTCAGGGATGGTTGCCTGGAGGAC
ATGGTTGATATTAGAAAGGTTTTGTGAATGCCCTGAATGTGCTAAGCCGA
GCACTCATCGTACAGCTGACTACTTCCGCTACGAGGCGTCGGGTAGAGAT
ACAAGGTAGGTTAGCGGTTGATCCCAAGACGATGACGCTCCTGGGAATTT
ACCGGGCATGCCATGAGTATAGTCCCACAGTGTTGTACCGGGTCAAAGCT
GACATTCAAATATTGTTGGGACCGTGTATGAGAGGCGACTGTACGTCATC
TCCCACGCTCACGGCCGGAGTCGTCCCTTTGTGTGGTTTGCTGAGTGCAT
CCATTATTGCAGCAATTTATCTTGAGATAGGAAATCGGATGGCGGAAGTA
CAGGGACAAGATTTATTATCATGAAACTGCACACAAAGAGAACGATTTTA
CGAGCGAGTACGGGGGAAAGCTATATACGGAATCGGCAAAGTAAACGCTT
CCACGAACATTTTCGAGGTTATAAAAAATCGTTTTCTAGCCAGGTGCGTT
TGTAGACTGGCTGACTGCGTGTCCGTCAAATTCTCAGTCGTGCCACCGTC
GCAGAAAGATTGCCAACCGTCTTGTGTGTTTCTCCTTAAATGCCTTGGAA
CAGAAGCAGTGAAGTAAATGGTGCTCGGTTTGCAGGGCATTCAAAGCACT
CCTGAGTGCCTTTCTATTGTCCTTATACCCTGGCCATCAATCATCCCTGG
GGCTCGAGTAGTAGTCACATCTGGAGCCGCATCAGTACACTTCTGTGAGC
TCTTTTCCCGCGGGGGCCTCCATTTTTTTAAACCCGATTGTTTCGCAGAC
TAGGGTGCTATCTATCTACGGACACCGAAACTTGTGTCTTTGGAAAGATG
TACCTCATTGAGATCTGTCATTAGGTCGACATGCTTTTTGGAACGCACTG
TACATGGGCTTTGCTGCCGCAAAAATCGAGTTTCGAAAGAAAGTTGCCCC
GTGGGCAGGTACACCGCTCTATACGGTATGTGCTGCCGTCTCTCAGTCCC
GGCTAGGATTTGAGGACAGAGCCACGAGGCGCGGGCGGTCCCCCCCCGCT
GCTTGCTGTTGGAGTTGCTACTAGAAAAACTCTGGGCCGACACCGCAGTA
GCTGCAGCTCGTTGAGGCGTACAGACCTGACGAGAAGGTCAATATGAATG
TAGCCTGCCTGTTGCTGCAGTCCGGTCACCATCTGCTTCTTTACTCCTTC
GGGACGTGGCCCTATGAGATCTGCTTCTGAGATTTATCTGTTTTTGGAAA
AATATATGTTGTAATAGAACATATAGGTTATATCAGACCTCCCAACGCAA
CACATGGTAGATCTGTGCTTTGGCACCCAGATCTGCTTTGGGGCGCTCCT
CCTTTGGAACGCTTGAAAACCTCCTCATAGTCAAGATGAGATGAGTCGGA
TGGATGTAAATCTTGAAGGATGTTTCGAAAAGCACCCTATTCCGAAGGGT
TAAGCTGTTGTATGACGGCGGAGGGGGACGGGAGGGGGGGTGGCAGCAGA
AACGATGGCGGCTGGTTTGGGGTCGAGCCGCGTATATTTCTTAAGTGGTC
TTTTTCCCGCTTTTATGTAGTGTCCTTTGCTGCGTTTTGAGGCTTCGTGC
ACTGGAGGATGACCTATTTGAGGGCGGCGGAGGGAAGGGAGGGGGGGGCA
CGCTTCTAACTGTTGGTTATGCGCATAGGCACACCTGAAAAATACTGTTC
TTTACGAAGGTGTGCTTGGTGTTTGTATGTGATTGGCGTGTGTGGCGTAG
TGGAATAGTATAGGTAAGAATGTGGCTGGTATGCCACTCAGTCATTACAA
CAAACCTGAGGTTTATGTATTACGTTTATCCATGTATACGAGTACTTTGC
GAAACGCTTGGGGGAGTACAAAAATGAGCAAGACGAGCAGCCCCGTTTTC
AGTTAGCTGAACTATTGCATTCATGAGTATTTCGTATCTGGTGTTATTTC
AGTACACACGAGCTATGCATGTACGGTACACGACAATCTAATGACCGGAA
CAATGCCGCAGACATAGTTCTCATGTCACGTCTTGTCTCTTGTTTTTCAC
AGCACGTTCAATATTATGTTCTAGTCACTCGATCAAGCCAAGCATTTCCG
TGTGCAGTTTCTTTCGTACATGACAGTATCTACAGTACTGTACAGTAGAG
CCCCCCTCGCCCCCTGGTGATCTAGTTTTGCTGATAACTGTAGACAAGTC
TAGACAACGGAAGTTTGAAATTAGCTGCATGACCTCAATACAAAGGATTT
ACCACGTGAACTTTATAGCTATAGTTTCAACTGACGAATGACAGGTTTCG
AGAGTGTCTGTCGTTCATGTGCTTTCCTCCACCCTCCCTCCTTCCTTTTC
GCGCGTACCCCCTCTCAGGTTGGCATGGTCAATGTGGGTGCCGCCATCGG
CTTTTTCCGGGGCGACCCAACTCTCCTTGTCGAAGATATGCAGGTTAGAA
GATGTTTTCCTTTCTGATGACTTCGTTTTTCCTCGAGTCGAAGACATTGA
CGTAATGTGAGAGTAAGGTACTCCCATTGAAGACTGGGTCTCGCGGGTAC
GGCGCTTGTGCTCTGGTGTTGGGTCTGGGTTGGGGAATTTGATGTAGACT
ATGACCCAGTTTTAGTAAGCTGTCCAATAGGAGTAACACGGAGATGTGTG
TGTATGTGTGTATTTATTCTTTCCTGGCGTGAATCTTGAACTTCTTCGCT
TTCATTTTCGTTGTCGTTTTCTCCTCGTCCGGAGATAGCTATAACGCTGT
TGCTACACGAGACATTCATAATACCAAAAAAAACAAATGCCGATGGTACG
TTGTGCAGAGGAACGGAAGTTCAGGAACCTCAGGAACGCGAGGAACGTTC
CCCTTATAGTGTTAAGCGTGGCCATCGAACTATGGCTAGTAATGGTATAT
TTTTGGTCTATTTTCGAAAGGCGGACGTGTTTTGGTATCATGATTGCCTC
TCCGTTCAGGTGGGTGGTTTCATGACGGCATGCTTTATCGCATACCCAAA
GATTAGGAAGTAAGTAGTTCTAGTAACTTCGTTGGAAACGGGCGACAAAT
ATTTTAGAAAGGGAAAAATACTGCCGGGAAGATTGAAACGCGTCCATACC
CTAGGGTGGGCCGACTTGATGGATGCAGAGGGTGTTGTTCTTTTCAATCT
CGAATGGGAGTGTATAACAACTGTAGTATATTTCGTAAAAGGTAAAAAGA
GGAGCCACAAAGGTTAACGTTGGGCTCTCTTTATGCAGCGAGCGCTGCAA
GCTTACTTGGCGGTGTTGTTGTAAGGCGTAGATTTGCAGTTTGTTCGGGG
CTTGTGTTGGGTCCTTGTTGAGTGAACACTTGATGTTCATACGGCTAGGT
AGTATATACATAATACAATTTTTGCACGTCTCTGTCTGTCTCTGTCCGTC
TGCGTCTGTGTCTGTCTGTCCGTCTGTGTGTCTGTCTGTCCGTCTGTGTG
TCTGTCTGTCCGTCTGTGTCTGTCTGTCCGTCTGTGTCTGTCTGTCCGTC
TGTGTCTGTCTGTCCGTCTGTGTCTGTCTGTGTCTATCTGTCTCTGTCTG
TCTGTCTGTCTCTGTCTGTCTGTCTCTGTCTGTCTCTGTGTGTCTGTCTC
TGTGTGTCTGTCTCTGTGTGTCTGTCTCTGTGTGTCTGTCTCTGTGTGTC
TGTCTCTGTGTGTCTGTCTCTGTGTGTCTGTCTGTCTGTCTCTTTCTGTC
TATCTCTGTCTATCTCTGTCTGTTTCTGTATATCTCTGTCTCTATCTCTG
TCTCTGTATCTGTCTGTTTCTGTCTATCTGTGTGACGTATCGTCAATGGG
GTGTCGGTGTATTGGTATATGGGACAGGCGCTACGACCAACGATTATGCC
GGTGGTGCCTAGAGTTATGAATCGTTTTCACGACAAGATTATCCATGGCG
CACTGGCCGCAGGAGGACTCAAGGCCAAATTATTTGTCAAGGCTTGCAAG
GATAAGGTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig12167:470..6978- >mRNA_H-paniculata_contig12167.1374.1 ID=mRNA_H-paniculata_contig12167.1374.1|Name=mRNA_H-paniculata_contig12167.1374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig12167:470..6978- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATATATATATGCTGCCGTGAAGAACGTGGTGGTGATGGACGGTGT
GAGCGAGAGCGACATGGGGGCGGGCGTCCGCGCGGGGCTGCGAGTGTACA
TATTCTCCGAGCTGGAAGGGATCGGAGCGGCAAACCGGAAGCCGCATCGC
CCCCCGGCCGCCACCGACCTCGCGACCTTCTGCTAATGCAATATATATAT
GCTGCCGTGAAGAACGTGGTGGTGATGGACGGTGTGAGCGAGAGCGACAT
GGGGGCGGGCGTCCGCGCGGGGCTGCGAGTGTACATATTCTCCGAGCTGG
AAGGGATCGGAGCGGCAAACCGGAAGCCGCATCGCCCCCCGGCCGCCACC
GACCTCGCGACCTTCTGCTACACGTCGGGCACGACGGGAAATCCGAAGGG
AGCGCTTTTGACGCACGGCAACCTTATAGCGGACGCCGCCGCATCAGTAT
ATATGGACACCCTCGTCGCGATGTCGAGCGACGTGTACCTGTCCTACTTG
CCCCTGCCCCATGTGTTCGAGCGCATGTGCCAGCACGTCGGGCACGACGG
GAAATCCGAAGGGAGCGCTTTTGACGCACGGCAACCTTATAGCGGACGCC
GCCGCATCAGTATATATGGACACCCTCGTCGCGATGTCGAGCGACGTGTA
CCTGTCCTACTTGCCCCTGCCCCATGTGTTCGAGCGCATGTGCCAGGTTG
GCATGGTCAATGTGGGTGCCGCCATCGGCTTTTTCCGGGGCGACCCAACT
CTCCTTGTCGAAGATATGCAGGTTGGCATGGTCAATGTGGGTGCCGCCAT
CGGCTTTTTCCGGGGCGACCCAACTCTCCTTGTCGAAGATATGCAGGCGC
TACGACCAACGATTATGCCGGTGGTGCCTAGAGTTATGAATCGTTTTCAC
GACAAGATTATCCATGGCGCACTGGCCGCAGGAGGACTCAAGGCCAAATT
ATTTGTCAAGGCTTGCAAGGATAAGGTAGCGCTACGACCAACGATTATGC
CGGTGGTGCCTAGAGTTATGAATCGTTTTCACGACAAGATTATCCATGGC
GCACTGGCCGCAGGAGGACTCAAGGCCAAATTATTTGTCAAGGCTTGCAA
GGATAAGGTA back to top
|