prot_H-paniculata_contig60485.13728.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60485.13728.1
Unique Nameprot_H-paniculata_contig60485.13728.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length52
Homology
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.630e-26
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +CFANIICL TC G+PDE YCQIRCGDLFEN+AVGKFNACAVSKKNCVKQRQ
Sbjct:   80 KCFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQ 131          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: F0YAR5_AURAN (VDE domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAR5_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 3.060e-21
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQR 51
            +C AN++C+NTCTG+ DE+ CQIRCGDLFEND VG+FNACAVS+K CV QR
Sbjct:   18 KCAANLVCINTCTGRADESECQIRCGDLFENDVVGEFNACAVSQKKCVPQR 68          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.070e-20
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +C AN+ C+ TC G+PDE+ CQIRCGD+FEN+ VG+FNACAVS+K CV QRQ
Sbjct:   57 KCLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQ 108          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A8J2WYQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYQ1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.120e-19
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +C AN++C+N+CTG+ DE+ CQIRCGDLFEN+ VG FNACAVS+K CV QRQ
Sbjct:   83 KCAANLVCINSCTGRKDESECQIRCGDLFENEVVGDFNACAVSQKKCVPQRQ 134          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2FLU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLU6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.060e-19
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCV 48
            +C AN++C+ TC G+ DEA CQI CGDLFEND VG+FNACAVS+K+CV
Sbjct:   66 KCAANLLCIQTCNGRADEAACQIGCGDLFENDVVGEFNACAVSQKSCV 113          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-18
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +C AN+IC+NTC GK DE  CQI+CGD+FEND VG+FN CAVS  +CV QRQ
Sbjct:  144 KCLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQ 195          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A0G4F7V7_VITBC (VDE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7V7_VITBC)

HSP 1 Score: 85.5 bits (210), Expect = 2.840e-18
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQR 51
            RC A+I+CLN C  KPDEA CQ++CG+LFEN+ VGKFNACAVS K CV Q+
Sbjct:  105 RCAADIVCLNLCNNKPDEAECQVKCGNLFENEVVGKFNACAVSDKKCVDQK 155          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2NVR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.810e-18
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
             C AN+IC+NTC G+PDE+ CQI CG+ FEN+ VG+FN CAVS  +CV Q+Q
Sbjct:  131 NCLANVICINTCNGRPDESECQIECGNTFENEVVGEFNKCAVSDMDCVPQKQ 182          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-17
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +C AN+ICLNTC  K DE  CQI CGDLFEN+ VG+FNACA+SKK CV +++
Sbjct:  132 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKE 183          
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: K8Z7V3_NANGC (Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7V3_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 1.250e-17
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 52
            +C AN+ICLNTC  K DE  CQI CGDLFEN+ VG+FNACA+SKK CV +++
Sbjct:  178 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKE 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE1.630e-2688.46VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
F0YAR5_AURAN3.060e-2172.55VDE domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2SKA3_9STRA9.070e-2067.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WYQ1_9STRA1.120e-1969.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FLU6_9STRA4.060e-1968.75Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2XNS0_9STRA1.720e-1867.31Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0G4F7V7_VITBC2.840e-1868.63VDE domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S2NVR0_9STRA3.810e-1861.54Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1B1Q5V0_9STRA1.180e-1765.38Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis ... [more]
K8Z7V3_NANGC1.250e-1765.38Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010788VDE lipocalin domainPFAMPF07137VDEcoord: 1..51
e-value: 2.1E-15
score: 56.9
NoneNo IPR availablePANTHERPTHR33970:SF1VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTICcoord: 1..51
NoneNo IPR availablePANTHERPTHR33970FAMILY NOT NAMEDcoord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60485contigH-paniculata_contig60485:284..439 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60485.13728.1mRNA_H-paniculata_contig60485.13728.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60485 284..439 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60485.13728.1 ID=prot_H-paniculata_contig60485.13728.1|Name=mRNA_H-paniculata_contig60485.13728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQ
RQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010788VDE