mRNA_H-paniculata_contig60240.13698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60240.13698.1
Unique NamemRNA_H-paniculata_contig60240.13698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5JRZ5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.280e-26
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:   65 TNTPQQTGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 123
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.450e-25
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGE++LTA YL NRSPH+ALGGATP
Sbjct:  154 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATP 212
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.320e-25
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVS RDGQ+LA +TRCL+KDG FP S+WGEL+LTA YL NRSPH ALGGATP
Sbjct:   91 TNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATP 149
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.680e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:   66 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 124
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.890e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  200 TNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.260e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  524 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 582
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.380e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  200 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.380e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  396 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 454
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.390e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  200 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.390e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSPHAALGGATP 177
            TNTPQQ GVSERDGQTLA +TRCL+KDG FP S+WGEL+LTA YL NRSPH+ALGGATP
Sbjct:  200 TNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60240.13698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRZ5_9PHAE9.280e-2681.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE1.450e-2579.66Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KV62_9PHAE2.320e-2577.97Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K5H2_9PHAE2.680e-2581.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE2.890e-2581.36Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KVF6_9PHAE3.260e-2581.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE3.380e-2581.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE3.380e-2581.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE3.390e-2581.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE3.390e-2581.36Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60240contigH-paniculata_contig60240:744..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.2
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog4538.ORGLA02G0045100.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930670.1268895-CDS-H-paniculata_contig60240:743..9201622930670.1268895-CDS-H-paniculata_contig60240:743..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60240 744..920 +
1691481398.9935799-CDS-H-paniculata_contig60240:743..9201691481398.9935799-CDS-H-paniculata_contig60240:743..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60240 744..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60240.13698.1prot_H-paniculata_contig60240.13698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60240 744..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60240.13698.1

>prot_H-paniculata_contig60240.13698.1 ID=prot_H-paniculata_contig60240.13698.1|Name=mRNA_H-paniculata_contig60240.13698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
TNTPQQNGVSERDGQTLATITRCLMKDGRFPASLWGELLLTAVYLCNRSP
HAALGGATP
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mRNA from alignment at H-paniculata_contig60240:744..920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60240.13698.1 ID=mRNA_H-paniculata_contig60240.13698.1|Name=mRNA_H-paniculata_contig60240.13698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig60240:744..920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAACACTCCTCAGCAAAACGGAGTGTCAGAACGAGACGGGCAGACCTT
GGCCACGATCACGAGGTGCCTCATGAAGGATGGGCGGTTCCCGGCATCCC
TGTGGGGCGAGCTTCTCCTTACGGCAGTGTACCTGTGCAACAGGTCTCCC
CACGCAGCACTGGGAGGAGCTACCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig60240:744..920+

>mRNA_H-paniculata_contig60240.13698.1 ID=mRNA_H-paniculata_contig60240.13698.1|Name=mRNA_H-paniculata_contig60240.13698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig60240:744..920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAACACTCCTCAGCAAAACGGAGTGTCAGAACGAGACGGGCAGACCTT
GGCCACGATCACGAGGTGCCTCATGAAGGATGGGCGGTTCCCGGCATCCC
TGTGGGGCGAGCTTCTCCTTACGGCAGTGTACCTGTGCAACAGGTCTCCC
CACGCAGCACTGGGAGGAGCTACCCCGACCAACACTCCTCAGCAAAACGG
AGTGTCAGAACGAGACGGGCAGACCTTGGCCACGATCACGAGGTGCCTCA
TGAAGGATGGGCGGTTCCCGGCATCCCTGTGGGGCGAGCTTCTCCTTACG
GCAGTGTACCTGTGCAACAGGTCTCCCCACGCAGCACTGGGAGGAGCTAC
CCCG
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