mRNA_H-paniculata_contig6005.13677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6005.13677.1
Unique NamemRNA_H-paniculata_contig6005.13677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6005.13677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6005contigH-paniculata_contig6005:4224..6992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2108
Cds size1977
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6005.13677.1prot_H-paniculata_contig6005.13677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6005 4224..6200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.6905282-CDS-H-paniculata_contig6005:4223..62001622930667.6905282-CDS-H-paniculata_contig6005:4223..6200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6005 4224..6200 -
1691481397.898551-CDS-H-paniculata_contig6005:4223..62001691481397.898551-CDS-H-paniculata_contig6005:4223..6200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6005 4224..6200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.7101123-UTR-H-paniculata_contig6005:6200..62101622930667.7101123-UTR-H-paniculata_contig6005:6200..6210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6005 6201..6210 -
1691481397.9108386-UTR-H-paniculata_contig6005:6200..62101691481397.9108386-UTR-H-paniculata_contig6005:6200..6210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6005 6201..6210 -
1622930667.724042-UTR-H-paniculata_contig6005:6873..69921622930667.724042-UTR-H-paniculata_contig6005:6873..6992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6005 6874..6992 -
1691481397.9243119-UTR-H-paniculata_contig6005:6873..69921691481397.9243119-UTR-H-paniculata_contig6005:6873..6992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6005 6874..6992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6005.13677.1

>prot_H-paniculata_contig6005.13677.1 ID=prot_H-paniculata_contig6005.13677.1|Name=mRNA_H-paniculata_contig6005.13677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=659bp
MTVALQHSQSNSGGQSTTLAEKSKGRVGSFFEQTGANNSSTRGMTTLEQP
QQTGPGTGQNPHHSIPTGQQHGPSRLGDQLARARGVRVGTFENHPRHHLE
DPNRQVADNSKPRSSSPHRNRSTTNTRQQRGTIVVPGSRSSIILEADHME
GEGMSTNTGNNATGSAGGGGGKSGGAGNYGSSNSKGNHHQLSDTQKHHQE
SLPAGTRKHHRRHSSGDDDGRSSGRRGRSGFSADASVASLAVGRSPRRHV
HPVKIKASPSPSLRRNSRAAAGSSASGSTEPGASSDSSSTFSPSPTKERR
SNSAGREGQGGALRVHQSASAKLGASGDAGGGSFRSSAPAPQGLSGGRTI
SIKRRGGAVTVVGATSYSESTSEDSSSLSPLPLPPPPPKQQQQQQQAPRT
ASSSGQVSTSLEGNPAADSIEDSHSSVSPHRTRTRRSGGVSASGGGGVAG
EEDRGMDAVAQISSSAGASLGGGSGSSDSRSYAGQASPISRAAAAAARGG
GNFAQVELGGSNNAVITHTRHHGQDRGGGGSTGDQSHNISRDRDRGERGG
DRDRGGGEHGEQPRERRERRRPRPQQGDGSSSNITSSDRENLIRVHGGRG
GGGGNGGPPQNGIEKGLRAHRVSGGGSADGAGNPSREKRAGEPRERRSRS
GRGHGQRRR
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mRNA from alignment at H-paniculata_contig6005:4224..6992-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6005.13677.1 ID=mRNA_H-paniculata_contig6005.13677.1|Name=mRNA_H-paniculata_contig6005.13677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2769bp|location=Sequence derived from alignment at H-paniculata_contig6005:4224..6992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGAGAGGAGGAAACAGGAAACAGACAAGGGGGAAAAAAGGGTTGTAA
TAACATAATAATACAGCGATAGCGCAGGAGAGGAGAGGGGGATTAAGGAG
ACGGCTGCTTGGTGCGGCGGTGAGTGTTCTCTAGGGGGGACCAAGAGGGG
GTGGGATAGGTGTCTCAAGGCGGCATGTGTCGCCAGACGGGTTTGCCAGG
TGTTGCCTCACGACCGGGAGCGGGAGCCCACGAATATTTTCCTCCTCTCA
AAAGCAGTGACAGCCAGACTGTCTCTTCTGCCTGTCTGTCTCTGAAACAC
AACATATTTTTGGAGGCACGCATACAAAACACACGAAAATCCGACAGGTA
CAGAGAGTCAGCATGGTATATTTAGTGTTCGAACCAAAAAGAACTTTTGC
CAGAAAGAATAGGCACACGTCCATCGGCAGTAGAGTAGTACTGGTGATGG
CAGTGGGTGGCAGGTTTGCTTAGGGTGCCCTGATCGTGTCGAAACGGACG
TTTTGTTTGATCCTGCTGTGTCCTTGTCCCCTGCATGTTCTCGTGAAAAA
ATTACCCATTTTGTTTTGTGGTCAGTACCAGGTCATCTCAAAATATCATC
CGAAAATTATTGATACCAACGACCCGATCTGTTTTTCATGAGTAGATATT
CCATCGAGTGCTTGGTATGTACCTCATTGACTTGACTACTAGAAATGCCC
CGCTGTTCCTCCCAGTCCAGCAACATTGGTCCCATCCTCATTTTATTTTG
TCGGTTCAACTCATTGTCTCCATGACACCCAGACTGCATCGAATGACTGT
GGCTCTTCAGCATTCTCAGAGCAACAGCGGCGGTCAATCCACAACCCTTG
CTGAAAAATCGAAGGGTAGGGTTGGTTCTTTTTTCGAACAAACTGGAGCA
AACAACAGCAGCACCAGGGGAATGACCACTCTGGAGCAGCCGCAACAAAC
GGGCCCGGGCACGGGGCAGAACCCCCATCACTCTATCCCCACCGGCCAAC
AACACGGTCCCTCTCGATTAGGAGACCAGCTCGCGCGGGCGCGAGGGGTG
CGCGTGGGGACATTCGAAAACCATCCACGACACCACCTTGAGGACCCAAA
TAGGCAAGTCGCTGATAATAGCAAGCCTCGATCGTCATCACCACATAGAA
ATAGGAGTACAACTAATACTAGGCAGCAGCGGGGAACGATCGTGGTCCCT
GGCAGCAGGTCTTCTATTATTTTAGAAGCAGACCATATGGAAGGGGAGGG
AATGTCGACCAACACTGGCAACAACGCCACCGGAAGCGCAGGTGGAGGTG
GAGGGAAGAGTGGAGGAGCAGGAAACTACGGCAGCAGCAACAGCAAGGGG
AACCACCACCAGTTATCCGACACCCAAAAGCACCACCAAGAGTCGTTGCC
AGCGGGCACACGCAAACACCACCGGCGGCACTCCAGTGGCGACGACGACG
GCCGCAGCAGCGGGAGAAGAGGTCGTAGCGGATTTTCTGCCGACGCAAGC
GTCGCTTCCCTTGCCGTTGGGCGATCACCTCGAAGGCACGTACACCCCGT
GAAAATCAAGGCCTCCCCGAGTCCTAGCCTACGGCGCAACTCCCGTGCCG
CTGCGGGGTCATCGGCTAGCGGTTCGACCGAGCCAGGAGCCAGCAGCGAC
AGCTCGTCGACATTCTCCCCTTCTCCCACGAAAGAGCGACGGAGCAATTC
CGCTGGCCGCGAGGGGCAAGGCGGAGCACTGCGAGTGCACCAGTCCGCAT
CGGCCAAGTTGGGAGCTTCGGGTGACGCCGGCGGCGGATCTTTTCGGTCG
TCCGCGCCTGCGCCGCAAGGGTTATCAGGCGGGCGAACCATCAGTATCAA
GAGGAGAGGTGGCGCGGTTACCGTAGTAGGCGCTACCAGCTACTCGGAGT
CGACGTCTGAAGATTCCAGCTCACTGTCACCACTGCCGCTGCCGCCGCCG
CCTCCAAAGCAGCAGCAGCAACAGCAGCAGGCACCCAGAACCGCTTCTTC
GAGCGGCCAGGTCAGCACCTCCTTGGAAGGAAATCCCGCGGCGGACAGTA
TAGAGGACTCTCACTCCTCTGTCTCTCCGCATCGTACCAGAACAAGGCGA
AGCGGCGGGGTAAGTGCGAGCGGTGGAGGGGGCGTCGCGGGAGAGGAGGA
TCGCGGGATGGATGCAGTGGCACAGATTTCTTCCTCGGCTGGCGCAAGTC
TGGGAGGCGGGAGCGGCAGCAGCGACAGCCGGAGTTACGCCGGGCAGGCC
TCACCGATCAGCCGGGCAGCGGCCGCCGCTGCCCGTGGCGGCGGAAACTT
CGCTCAAGTGGAACTCGGCGGCAGCAACAACGCAGTCATCACCCACACGA
GGCATCACGGCCAAGACCGCGGCGGCGGTGGTTCGACGGGGGATCAATCA
CACAACATCAGCAGGGACCGTGACAGAGGGGAGCGAGGCGGTGACCGGGA
TCGTGGCGGTGGGGAGCACGGAGAACAACCGCGAGAGCGCCGCGAGCGGC
GACGTCCCAGGCCTCAGCAAGGTGACGGCAGCAGCAGCAATATCACCAGC
AGTGACAGAGAAAACCTCATACGTGTGCACGGCGGGAGGGGTGGCGGCGG
CGGCAACGGCGGCCCGCCTCAAAATGGCATTGAGAAGGGACTCAGAGCTC
ACAGGGTGTCAGGTGGCGGCAGCGCGGACGGTGCGGGAAATCCTAGCAGA
GAGAAGAGGGCCGGGGAGCCTAGAGAACGCCGCTCTCGATCGGGCCGGGG
TCACGGGCAGCGGCGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6005:4224..6992-

>mRNA_H-paniculata_contig6005.13677.1 ID=mRNA_H-paniculata_contig6005.13677.1|Name=mRNA_H-paniculata_contig6005.13677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3954bp|location=Sequence derived from alignment at H-paniculata_contig6005:4224..6992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGTGGCTCTTCAGCATTCTCAGAGCAACAGCGGCGGTCAATCCAC
AACCCTTGCTGAAAAATCGAAGGGTAGGGTTGGTTCTTTTTTCGAACAAA
CTGGAGCAAACAACAGCAGCACCAGGGGAATGACCACTCTGGAGCAGCCG
CAACAAACGGGCCCGGGCACGGGGCAGAACCCCCATCACTCTATCCCCAC
CGGCCAACAACACGGTCCCTCTCGATTAGGAGACCAGCTCGCGCGGGCGC
GAGGGGTGCGCGTGGGGACATTCGAAAACCATCCACGACACCACCTTGAG
GACCCAAATAGGCAAGTCGCTGATAATAGCAAGCCTCGATCGTCATCACC
ACATAGAAATAGGAGTACAACTAATACTAGGCAGCAGCGGGGAACGATCG
TGGTCCCTGGCAGCAGGTCTTCTATTATTTTAGAAGCAGACCATATGGAA
GGGGAGGGAATGTCGACCAACACTGGCAACAACGCCACCGGAAGCGCAGG
TGGAGGTGGAGGGAAGAGTGGAGGAGCAGGAAACTACGGCAGCAGCAACA
GCAAGGGGAACCACCACCAGTTATCCGACACCCAAAAGCACCACCAAGAG
TCGTTGCCAGCGGGCACACGCAAACACCACCGGCGGCACTCCAGTGGCGA
CGACGACGGCCGCAGCAGCGGGAGAAGAGGTCGTAGCGGATTTTCTGCCG
ACGCAAGCGTCGCTTCCCTTGCCGTTGGGCGATCACCTCGAAGGCACGTA
CACCCCGTGAAAATCAAGGCCTCCCCGAGTCCTAGCCTACGGCGCAACTC
CCGTGCCGCTGCGGGGTCATCGGCTAGCGGTTCGACCGAGCCAGGAGCCA
GCAGCGACAGCTCGTCGACATTCTCCCCTTCTCCCACGAAAGAGCGACGG
AGCAATTCCGCTGGCCGCGAGGGGCAAGGCGGAGCACTGCGAGTGCACCA
GTCCGCATCGGCCAAGTTGGGAGCTTCGGGTGACGCCGGCGGCGGATCTT
TTCGGTCGTCCGCGCCTGCGCCGCAAGGGTTATCAGGCGGGCGAACCATC
AGTATCAAGAGGAGAGGTGGCGCGGTTACCGTAGTAGGCGCTACCAGCTA
CTCGGAGTCGACGTCTGAAGATTCCAGCTCACTGTCACCACTGCCGCTGC
CGCCGCCGCCTCCAAAGCAGCAGCAGCAACAGCAGCAGGCACCCAGAACC
GCTTCTTCGAGCGGCCAGGTCAGCACCTCCTTGGAAGGAAATCCCGCGGC
GGACAGTATAGAGGACTCTCACTCCTCTGTCTCTCCGCATCGTACCAGAA
CAAGGCGAAGCGGCGGGGTAAGTGCGAGCGGTGGAGGGGGCGTCGCGGGA
GAGGAGGATCGCGGGATGGATGCAGTGGCACAGATTTCTTCCTCGGCTGG
CGCAAGTCTGGGAGGCGGGAGCGGCAGCAGCGACAGCCGGAGTTACGCCG
GGCAGGCCTCACCGATCAGCCGGGCAGCGGCCGCCGCTGCCCGTGGCGGC
GGAAACTTCGCTCAAGTGGAACTCGGCGGCAGCAACAACGCAGTCATCAC
CCACACGAGGCATCACGGCCAAGACCGCGGCGGCGGTGGTTCGACGGGGG
ATCAATCACACAACATCAGCAGGGACCGTGACAGAGGGGAGCGAGGCGGT
GACCGGGATCGTGGCGGTGGGGAGCACGGAGAACAACCGCGAGAGCGCCG
CGAGCGGCGACGTCCCAGGCCTCAGCAAGGTGACGGCAGCAGCAGCAATA
TCACCAGCAGTGACAGAGAAAACCTCATACGTGTGCACGGCGGGAGGGGT
GGCGGCGGCGGCAACGGCGGCCCGCCTCAAAATGGCATTGAGAAGGGACT
CAGAGCTCACAGGGTGTCAGGTGGCGGCAGCGCGGACGGTGCGGGAAATC
CTAGCAGAGAGAAGAGGGCCGGGGAGCCTAGAGAACGCCGCTCTCGATCG
GGCCGGGGTCACGGGCAGCGGCGGAGGATGACTGTGGCTCTTCAGCATTC
TCAGAGCAACAGCGGCGGTCAATCCACAACCCTTGCTGAAAAATCGAAGG
GTAGGGTTGGTTCTTTTTTCGAACAAACTGGAGCAAACAACAGCAGCACC
AGGGGAATGACCACTCTGGAGCAGCCGCAACAAACGGGCCCGGGCACGGG
GCAGAACCCCCATCACTCTATCCCCACCGGCCAACAACACGGTCCCTCTC
GATTAGGAGACCAGCTCGCGCGGGCGCGAGGGGTGCGCGTGGGGACATTC
GAAAACCATCCACGACACCACCTTGAGGACCCAAATAGGCAAGTCGCTGA
TAATAGCAAGCCTCGATCGTCATCACCACATAGAAATAGGAGTACAACTA
ATACTAGGCAGCAGCGGGGAACGATCGTGGTCCCTGGCAGCAGGTCTTCT
ATTATTTTAGAAGCAGACCATATGGAAGGGGAGGGAATGTCGACCAACAC
TGGCAACAACGCCACCGGAAGCGCAGGTGGAGGTGGAGGGAAGAGTGGAG
GAGCAGGAAACTACGGCAGCAGCAACAGCAAGGGGAACCACCACCAGTTA
TCCGACACCCAAAAGCACCACCAAGAGTCGTTGCCAGCGGGCACACGCAA
ACACCACCGGCGGCACTCCAGTGGCGACGACGACGGCCGCAGCAGCGGGA
GAAGAGGTCGTAGCGGATTTTCTGCCGACGCAAGCGTCGCTTCCCTTGCC
GTTGGGCGATCACCTCGAAGGCACGTACACCCCGTGAAAATCAAGGCCTC
CCCGAGTCCTAGCCTACGGCGCAACTCCCGTGCCGCTGCGGGGTCATCGG
CTAGCGGTTCGACCGAGCCAGGAGCCAGCAGCGACAGCTCGTCGACATTC
TCCCCTTCTCCCACGAAAGAGCGACGGAGCAATTCCGCTGGCCGCGAGGG
GCAAGGCGGAGCACTGCGAGTGCACCAGTCCGCATCGGCCAAGTTGGGAG
CTTCGGGTGACGCCGGCGGCGGATCTTTTCGGTCGTCCGCGCCTGCGCCG
CAAGGGTTATCAGGCGGGCGAACCATCAGTATCAAGAGGAGAGGTGGCGC
GGTTACCGTAGTAGGCGCTACCAGCTACTCGGAGTCGACGTCTGAAGATT
CCAGCTCACTGTCACCACTGCCGCTGCCGCCGCCGCCTCCAAAGCAGCAG
CAGCAACAGCAGCAGGCACCCAGAACCGCTTCTTCGAGCGGCCAGGTCAG
CACCTCCTTGGAAGGAAATCCCGCGGCGGACAGTATAGAGGACTCTCACT
CCTCTGTCTCTCCGCATCGTACCAGAACAAGGCGAAGCGGCGGGGTAAGT
GCGAGCGGTGGAGGGGGCGTCGCGGGAGAGGAGGATCGCGGGATGGATGC
AGTGGCACAGATTTCTTCCTCGGCTGGCGCAAGTCTGGGAGGCGGGAGCG
GCAGCAGCGACAGCCGGAGTTACGCCGGGCAGGCCTCACCGATCAGCCGG
GCAGCGGCCGCCGCTGCCCGTGGCGGCGGAAACTTCGCTCAAGTGGAACT
CGGCGGCAGCAACAACGCAGTCATCACCCACACGAGGCATCACGGCCAAG
ACCGCGGCGGCGGTGGTTCGACGGGGGATCAATCACACAACATCAGCAGG
GACCGTGACAGAGGGGAGCGAGGCGGTGACCGGGATCGTGGCGGTGGGGA
GCACGGAGAACAACCGCGAGAGCGCCGCGAGCGGCGACGTCCCAGGCCTC
AGCAAGGTGACGGCAGCAGCAGCAATATCACCAGCAGTGACAGAGAAAAC
CTCATACGTGTGCACGGCGGGAGGGGTGGCGGCGGCGGCAACGGCGGCCC
GCCTCAAAATGGCATTGAGAAGGGACTCAGAGCTCACAGGGTGTCAGGTG
GCGGCAGCGCGGACGGTGCGGGAAATCCTAGCAGAGAGAAGAGGGCCGGG
GAGCCTAGAGAACGCCGCTCTCGATCGGGCCGGGGTCACGGGCAGCGGCG
GAGG
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