mRNA_H-paniculata_contig12155.1368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12155.1368.1
Unique NamemRNA_H-paniculata_contig12155.1368.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 5.390e-52
Identity = 98/160 (61.25%), Postives = 114/160 (71.25%), Query Frame = 3 
Query:  303 TPSPTVACAHHSWLLSRGSCRAHPRR--PVLRVPSWSLISAGGVVLFAMAKAGMWQLLESNGEEGKEVGAGAPAAAEENVKGAMITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAGERW 776
            TP    A A   W   RG   A PR   P L    W+L  A GVV  A A++ + +L+ ++ ++G++ G G   AA   V  AMI+FIKAYKKELSPL+PPACRFLPTCSVY V+AIEKFGPTKGAVLTAWRLMRCNPFAGYG D P+WPPPGWFAGERW
Sbjct:    5 TPGGVAALARPFWP-DRGQGSAQPRGSPPAL----WTLACAAGVVAVASARSAVSRLVLAS-DDGEQDGGG---AAVNKVGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.740e-34
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 3 
Query:  510 APAAAEENVKGAMITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAG 767
            AP   ++ +K AMI FIKAYK+E+SPL+PPACRF PTCSVYAVE+IE+FG  +G VLTAWRL+RC P  GYG D P+WPPP WFAG
Sbjct:   56 APDHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.760e-29
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 3 
Query:  546 MITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAG 767
            +I F + YK+ +SPL+P ACRF PTCS YA+E+++KFGP KGAVLTAWRL+RCNP  G G D P+WPPPGW AG
Sbjct:   68 LINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.850e-28
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 3 
Query:  546 MITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAG 767
            +I F + YK+ +SPL+P ACRF PTCS YA+E+++KFGP KGAVLTAWRL+RCNP  G G D P+WPPPGW AG
Sbjct:  166 LINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.570e-27
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:  525 EENVKGAMITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAG 767
            E  +  A++  ++ YK+E+SP M PACRFLPTCS Y++++I+ +GP KG VLTAWR++RCNPF G G D P+WPPPGWFAG
Sbjct:   68 ESELSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 3.050e-26
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:  558 IKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFAGERW*TFGVTGVRCISRKNSQHGVEYP 845
            +K YK+ LSPL+PP CRF+PTCS YA+++ E+F P + AVLT WRL+RCNP AGYG D P+WPPPG++AG +     +      SR+ +   +E P
Sbjct:   45 LKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQRVRTSLDDQ--ASRRRALESLESP 138
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A7S1XBZ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBZ4_9RHOD)

HSP 1 Score: 110 bits (276), Expect = 2.220e-25
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:  546 MITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPP 749
            M+T ++ YK+++SPLMPP CRFLP+CS Y++EAI++FGP KG VLTAWR++RCNPF G G D P+WPP
Sbjct:   42 MLTALRWYKEQISPLMPPNCRFLPSCSSYSIEAIQEFGPAKGLVLTAWRILRCNPFGGAGYDPPQWPP 109
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.300e-25
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  546 MITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPP 749
            M+  I  YK  +SPL+PPACRFLPTCS Y V+AIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP
Sbjct:   67 MVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 108 bits (269), Expect = 7.010e-25
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:  534 VKGAMITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPP 749
            +  +MI  I  YK+ +SPL+PPACRFLPTCS Y V+AIE+FGP+KG +LTAWRL RC+PF G G D P+WPP
Sbjct:    1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPP 72
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BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 112 bits (280), Expect = 2.110e-24
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 3 
Query:  534 VKGAMITFIKAYKKELSPLMPPACRFLPTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPP 749
            +  +M++ I  YK+ +SPL+PPACRF+PTCS Y V+AI++FGPTKGA+LTAWRLMRC+PF G G D PRWPP
Sbjct:  170 MSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12155.1368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF53_ECTSI5.390e-5261.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNH9_9STRA5.740e-3468.60Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9DFE3_9STRA4.760e-2966.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA6.850e-2866.22Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1U9Q3_9STRA1.570e-2759.26Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0QB70_9EUKA3.050e-2651.04Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1XBZ4_9RHOD2.220e-2564.71Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2R8H5_9STRA6.300e-2567.65Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8BR73_THAPS7.010e-2563.89Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2ENE8_TRICV2.110e-2465.28Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12155contigH-paniculata_contig12155:854..2515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue4.5e-45
Seed eggNOG ortholog2880.D8LF53
KEGG koko:K08998
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haemolytic
EggNOG OGs2S1FR@2759,COG0759@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size1662
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12155.1368.1prot_H-paniculata_contig12155.1368.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12155 1018..1632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.8667436-UTR-H-paniculata_contig12155:853..10171622928935.8667436-UTR-H-paniculata_contig12155:853..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 854..1017 +
1691480673.2398424-UTR-H-paniculata_contig12155:853..10171691480673.2398424-UTR-H-paniculata_contig12155:853..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 854..1017 +
1622928935.8964906-UTR-H-paniculata_contig12155:1632..25151622928935.8964906-UTR-H-paniculata_contig12155:1632..2515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 1633..2515 +
1691480673.2718503-UTR-H-paniculata_contig12155:1632..25151691480673.2718503-UTR-H-paniculata_contig12155:1632..2515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 1633..2515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.8794482-CDS-H-paniculata_contig12155:1017..16321622928935.8794482-CDS-H-paniculata_contig12155:1017..1632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 1018..1632 +
1691480673.2603292-CDS-H-paniculata_contig12155:1017..16321691480673.2603292-CDS-H-paniculata_contig12155:1017..1632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 1018..1632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12155.1368.1

>prot_H-paniculata_contig12155.1368.1 ID=prot_H-paniculata_contig12155.1368.1|Name=mRNA_H-paniculata_contig12155.1368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MLNSIVRALIATTALEGVFGHDLKSALPPCTVNSSVPKGFKRDRRHTPSP
TVACAHHSWLLSRGSCRAHPRRPVLRVPSWSLISAGGVVLFAMAKAGMWQ
LLESNGEEGKEVGAGAPAAAEENVKGAMITFIKAYKKELSPLMPPACRFL
PTCSVYAVEAIEKFGPTKGAVLTAWRLMRCNPFAGYGTDNPRWPPPGWFA
GERW*
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mRNA from alignment at H-paniculata_contig12155:854..2515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12155.1368.1 ID=mRNA_H-paniculata_contig12155.1368.1|Name=mRNA_H-paniculata_contig12155.1368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig12155:854..2515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATATTTCATCAGAGGAAAAAACAAATTTCACGAAGCGGGCGTGAGGGA
TCCTTCTCCCTCTCTAATTGCGTAAGTGTACTATATTTTTGACGGACAGC
GGTCAATAGACTTCGCTGTTGTTCTGCTGCGAGACACATGAACCACCGAC
AATTGTGTTGACTCATGTTAAATTCAATCGTTCGCGCTTTGATCGCCACA
ACTGCTCTAGAGGGTGTGTTCGGCCATGATTTAAAGTCAGCACTCCCTCC
CTGCACCGTGAACAGCAGTGTCCCAAAAGGATTCAAAAGAGATCGACGGC
ATACCCCCTCCCCGACGGTGGCATGCGCCCATCATTCATGGTTGCTCAGT
CGAGGATCGTGCAGGGCGCACCCTCGTCGCCCAGTGCTACGTGTGCCGTC
GTGGTCGTTGATATCAGCTGGGGGGGTTGTGTTGTTCGCTATGGCGAAGG
CTGGAATGTGGCAGCTGTTGGAGAGCAATGGGGAGGAGGGGAAAGAAGTA
GGAGCAGGAGCACCTGCAGCGGCCGAGGAGAACGTGAAAGGAGCTATGAT
TACCTTCATCAAGGCGTATAAAAAGGAATTGTCGCCCCTGATGCCGCCCG
CATGCCGGTTCTTGCCCACGTGTTCGGTGTATGCGGTGGAGGCCATCGAG
AAGTTTGGGCCGACGAAGGGAGCGGTGTTGACTGCCTGGCGACTAATGCG
GTGCAATCCTTTCGCTGGGTATGGTACCGATAACCCAAGATGGCCCCCGC
CTGGATGGTTTGCGGGAGAACGCTGGTGAACATTTGGTGTCACGGGTGTT
CGTTGCATAAGCAGGAAGAACAGTCAGCACGGAGTAGAATATCCAGCCTG
CTGACATCTCTGGCTGTGAGTTTTGAGACACCTGGTGAGCACTGACAGAG
CTTTGTAATGCACGTAGGAGACCCGAATGTCCCGTGTGACCTTTGGTGTC
AGCGCACAAGAACTATGAAATTGATTTACAACATTCATCACTTGTCTCGC
CAGCACTGCCTAGTGTCGTTGCTGGAGTGGCGGTAGGCGGGTTTTGAAGT
GTTGGACGGGATTTAAAGTTTACGATTACTGAAAGGAGGAAATATGGTTC
ATTTTTCCCAGCGGGTGTTTAGAACAATTGGATTGTGTTTACTTGTGGGC
GCTCGCACGCCGAAATGGTGCGTTCTGAACCGTTTCGCTCAGTAGAGCCT
ATGCAGTAAGGCGGTGATGCGTTAGCCAAGCAGGAAGTTTCACTTGTGCT
GGCAGCAGCGATTTCGGGACCAGAGTACCCGTTCATGAGATGCTTCGCGA
ACCTTTTCTCTTTTGTCAAGTAGTAATTGATTGACCTCGTCTGCTCTGTG
AACGGGCGCCTACTGTTTTTTCCCCGTTGTGGCCTACGATAACACCAGAC
AATTACACGGTGCTACTACTGCTCGAGGTTTGTTCGTTAGCCATTCCATG
TACCTCTGACCACCTTCTTGTCCTGTCCATGACAATTTCTGTTTTATTTA
GGCTCTCGTGGATGGTAGATTTTGGTCTCAGGTCTGGGCTTGAATGGTTT
CTCATGCATTCTGTTTGTTGCTGCTATTCTCTGGTGTGTGTTGCTGGACG
ATAACTGGAGCAACTGTCAGAGCTGCTCCACGGCTACGAATTTGGTTATT
CGTTCAAAAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12155:854..2515+

>mRNA_H-paniculata_contig12155.1368.1 ID=mRNA_H-paniculata_contig12155.1368.1|Name=mRNA_H-paniculata_contig12155.1368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig12155:854..2515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAAATTCAATCGTTCGCGCTTTGATCGCCACAACTGCTCTAGAGGG
TGTGTTCGGCCATGATTTAAAGTCAGCACTCCCTCCCTGCACCGTGAACA
GCAGTGTCCCAAAAGGATTCAAAAGAGATCGACGGCATACCCCCTCCCCG
ACGGTGGCATGCGCCCATCATTCATGGTTGCTCAGTCGAGGATCGTGCAG
GGCGCACCCTCGTCGCCCAGTGCTACGTGTGCCGTCGTGGTCGTTGATAT
CAGCTGGGGGGGTTGTGTTGTTCGCTATGGCGAAGGCTGGAATGTGGCAG
CTGTTGGAGAGCAATGGGGAGGAGGGGAAAGAAGTAGGAGCAGGAGCACC
TGCAGCGGCCGAGGAGAACGTGAAAGGAGCTATGATTACCTTCATCAAGG
CGTATAAAAAGGAATTGTCGCCCCTGATGCCGCCCGCATGCCGGTTCTTG
CCCACGTGTTCGGTGTATGCGGTGGAGGCCATCGAGAAGTTTGGGCCGAC
GAAGGGAGCGGTGTTGACTGCCTGGCGACTAATGCGGTGCAATCCTTTCG
CTGGGTATGGTACCGATAACCCAAGATGGCCCCCGCCTGGATGGTTTGCG
GGAGAACGCTGGTGAATGTTAAATTCAATCGTTCGCGCTTTGATCGCCAC
AACTGCTCTAGAGGGTGTGTTCGGCCATGATTTAAAGTCAGCACTCCCTC
CCTGCACCGTGAACAGCAGTGTCCCAAAAGGATTCAAAAGAGATCGACGG
CATACCCCCTCCCCGACGGTGGCATGCGCCCATCATTCATGGTTGCTCAG
TCGAGGATCGTGCAGGGCGCACCCTCGTCGCCCAGTGCTACGTGTGCCGT
CGTGGTCGTTGATATCAGCTGGGGGGGTTGTGTTGTTCGCTATGGCGAAG
GCTGGAATGTGGCAGCTGTTGGAGAGCAATGGGGAGGAGGGGAAAGAAGT
AGGAGCAGGAGCACCTGCAGCGGCCGAGGAGAACGTGAAAGGAGCTATGA
TTACCTTCATCAAGGCGTATAAAAAGGAATTGTCGCCCCTGATGCCGCCC
GCATGCCGGTTCTTGCCCACGTGTTCGGTGTATGCGGTGGAGGCCATCGA
GAAGTTTGGGCCGACGAAGGGAGCGGTGTTGACTGCCTGGCGACTAATGC
GGTGCAATCCTTTCGCTGGGTATGGTACCGATAACCCAAGATGGCCCCCG
CCTGGATGGTTTGCGGGAGAACGCTGGTGA
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