mRNA_H-paniculata_contig59925.13653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59925.13653.1
Unique NamemRNA_H-paniculata_contig59925.13653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59925.13653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59925contigH-paniculata_contig59925:402..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.3753095-CDS-H-paniculata_contig59925:402..5181622930662.3753095-CDS-H-paniculata_contig59925:402..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59925 403..518 -
1691481394.8400815-CDS-H-paniculata_contig59925:402..5181691481394.8400815-CDS-H-paniculata_contig59925:402..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59925 403..518 -
1622930662.3937664-CDS-H-paniculata_contig59925:751..8691622930662.3937664-CDS-H-paniculata_contig59925:751..869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59925 752..869 -
1691481394.8506472-CDS-H-paniculata_contig59925:751..8691691481394.8506472-CDS-H-paniculata_contig59925:751..869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59925 752..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59925.13653.1prot_H-paniculata_contig59925.13653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59925 403..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59925.13653.1

>prot_H-paniculata_contig59925.13653.1 ID=prot_H-paniculata_contig59925.13653.1|Name=mRNA_H-paniculata_contig59925.13653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
DDEKCDDYKCPDGWRWMKDYRGKNCYDGCDKDECCEKEKDDEKCDDYECP
DGWRWMKDYKGKKCYDGCDTDECCEKER
back to top

mRNA from alignment at H-paniculata_contig59925:402..869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59925.13653.1 ID=mRNA_H-paniculata_contig59925.13653.1|Name=mRNA_H-paniculata_contig59925.13653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig59925:402..869- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACGAGAAGTGCGACGACTACAAGTGCCCCGACGGCTGGAGGTGGAT
GAAGGACTACAGGGGCAAGAATTGCTACGACGGGTGCGACAAGGACGAAT
GTTGCGAGAAGGAAAAGGGTGAGTTGGGTGTGATTATTCGTCGGCGGCTT
CTGGGGATAAAAACGTTATCGGGGCGTATACGTCGAGAAGCAGGTATCTG
AGGTTTCGATTATCGCCGTCGTACTTTCTGGCGGCCGTTCGGTGAGTGGT
GTAAGTTGCATGATTCCTCTACTTGTACACTGCGATATCGAGTGTCCGTA
TGTTATGCACGGGCGTGACCCGTGGCGTTGTACGTGGGCGAATCTCCGCA
GACGACGAGAAGTGCGACGACTACGAGTGCCCGGACGGCTGGAGATGGAT
GAAGGACTACAAGGGCAAGAAGTGCTACGACGGGTGCGACACAGACGAAT
GTTGCGAGAAGGAGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig59925:402..869-

>mRNA_H-paniculata_contig59925.13653.1 ID=mRNA_H-paniculata_contig59925.13653.1|Name=mRNA_H-paniculata_contig59925.13653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig59925:402..869- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACGAGAAGTGCGACGACTACAAGTGCCCCGACGGCTGGAGGTGGAT
GAAGGACTACAGGGGCAAGAATTGCTACGACGGGTGCGACAAGGACGAAT
GTTGCGAGAAGGAAAAGGGACGACGAGAAGTGCGACGACTACAAGTGCCC
CGACGGCTGGAGGTGGATGAAGGACTACAGGGGCAAGAATTGCTACGACG
GGTGCGACAAGGACGAATGTTGCGAGAAGGAAAAGGACGACGAGAAGTGC
GACGACTACGAGTGCCCGGACGGCTGGAGATGGATGAAGGACTACAAGGG
CAAGAAGTGCTACGACGGGTGCGACACAGACGAATGTTGCGAGAAGGAGA
GGACGACGAGAAGTGCGACGACTACGAGTGCCCGGACGGCTGGAGATGGA
TGAAGGACTACAAGGGCAAGAAGTGCTACGACGGGTGCGACACAGACGAA
TGTTGCGAGAAGGAGAGG
back to top