mRNA_H-paniculata_contig5986.13642.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5986.13642.1
Unique NamemRNA_H-paniculata_contig5986.13642.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A6H5JRL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.060e-58
Identity = 155/186 (83.33%), Postives = 157/186 (84.41%), Query Frame = 1 
Query:  112 YNRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGY--ERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXG-YNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKPAGG 660
            YNRRPGDWECPSCGNNCFASR+ECNRCQTPKP GAGGG   ER XXXXX  XXXXXXXXXXXX   XXXXXXXXXXX  YNRRPGDWDCP CGNHCFASR  CNRC T +P G GGG        XXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCP CGYNCFASRMECNRCHTPKP GG
Sbjct:   49 YNRRPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGGYGERGXXXXXXXXXXXXXXXXXXXGYSXXXXXXXXXXXXXYNRRPGDWDCPSCGNHCFASRVVCNRCPTPRPEGAGGG----FERGXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPSCGYNCFASRMECNRCHTPKPVGG 230
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: D8LIQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.600e-39
Identity = 138/181 (76.24%), Postives = 140/181 (77.35%), Query Frame = 1 
Query:  115 NRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKPAG 657
            N+RPGDWECPSCGNNCFASR ECNRCQTPKP GAGG       XXX  XXXXXX XXXXXXX XXXXXXXXXXX    R GDW CP CGN+CFA R ECNRCQT KP GEGG    XXXXXXXX XXXXXXXXXXXXXXXXXXXXXX   R GDW CP CG  CFA R ECNRC TPKP G
Sbjct:   47 NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGG-------XXXXYXXXXXXYXXXXXXXYXXXXXXXXXXXXXXXREGDWTCPSCGNNCFAFRQECNRCQTPKPGGEGG----XXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXREGDWTCPSCGNICFAFRNECNRCQTPKPNG 216
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.720e-32
Identity = 135/178 (75.84%), Postives = 138/178 (77.53%), Query Frame = 1 
Query:  124 PGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKPAG 657
            P  WECPSCGNNCFASR ECNRCQTPKP  AG         XX  XXXXXXXXXXXXXXXXXXXXXXXXXXG   R GDW CP CGN+CFA R ECNRCQT KP G+G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   R GDW CP CG NCFA R ECNRC TPKP+G
Sbjct:    5 PPGWECPSCGNNCFASRSECNRCQTPKP--AGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---REGDWACPSCGNNCFAFRQECNRCQTPKPGGDG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDWACPSCGNNCFAFRNECNRCQTPKPSG 174
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A8J6C3G0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C3G0_DIALT)

HSP 1 Score: 124 bits (311), Expect = 1.090e-28
Identity = 101/182 (55.49%), Postives = 111/182 (60.99%), Query Frame = 1 
Query:  121 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKPAGGGG 666
            RPGDW CP+CG N FAS+  C RCQTPKP G GG  ++                            XXXX  G + RPGDW+CPGCG + FAS+  C RCQ  KP G G G  XXXXXXXXXXXXXXXXXXXXXXXXXX         RPGDW CPGC  N F+S+  C RC TPKPAGGGG
Sbjct:   27 RPGDWSCPTCGANVFASKNSCFRCQTPKP-GMGGDAQQGMFRGG---------------------GXXXXVGGGDVRPGDWNCPGCGANVFASKNSCFRCQAPKPGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDV------RPGDWVCPGCQANVFSSKNSCFRCQTPKPAGGGG 180
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A2V0NK80_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NK80_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 6.150e-28
Identity = 123/177 (69.49%), Postives = 127/177 (71.75%), Query Frame = 1 
Query:  121 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKP 651
            RPGDW CPSCGNNC+A R  CNRC TPKP+G GGG    XXXX Y XXXXXXXXXXXXXXXXXXXXXXXXX     RPGDW CPGCGN+CF  R  CNRC   KP G G        XXXXXXXXXX  XXX  XXXXXXXXXXX   RPGDW C GCG NCFA R  CNRC  P+P
Sbjct:  147 RPGDWPCPSCGNNCYAFRNACNRCGTPKPDG-GGGAAGXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXX-----RPGDWPCPGCGNNCFGWREACNRCGAPKPPGAG--------XXXXXXXXXXPGXXXARXXXXXXXXXXXXXARPGDWPCSGCGQNCFAWREACNRCGAPRP 309
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A5J4XE95_9CHLO (RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE95_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 7.100e-22
Identity = 86/177 (48.59%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  121 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKP 651
            RPGDW CP C NNCFAS+  C +C  PKP  AG      XXXXX  XXXXXXXXXXXXX                 RPGDW CP C N CFAS+ +CNRC T KP G G    XXXXXXXX                            P DW CPGCG   +A R  CN+C+TPKP
Sbjct:  180 RPGDWPCPGCNNNCFASKSACPKCGAPKPADAGXXXXXXXXXXXXXXXXXXXXXXXXXXPRPK-----------EARPGDWPCPNCNNICFASKDKCNRCDTPKPPGAGXXXXXXXXXXXXGRVQAAPQGPAGLFA-------------PEDWTCPGCGNRNWARRNSCNQCNTPKP 332
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A7S2SNJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SNJ9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.930e-19
Identity = 64/183 (34.97%), Postives = 73/183 (39.89%), Query Frame = 1 
Query:  115 NRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPG--CGNHCFASRTECNRCQTQK--PAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSKRPGDWDCPGCGYNCFASRMECNRCHTPKP 651
            N RPGDW CP C  N FASR EC +C+TPKP GAG           Y                               R GDW CP   C  H +ASRT C RC   +  PA  GGG +                                 ++RPGDW C  CG NCFASR  C +C+ PKP
Sbjct:  227 NTRPGDWTCPECRANVFASRNECYKCRTPKPPGAGESQPPYSGHTPYNGGYHVPPMGQGPPNGF--------------RAGDWLCPSPQCSAHNYASRTTCFRCNGPRGPPAPMGGGGYPPQQFAPYGGNQYQRRPP---------------AERPGDWKC-SCGANCFASRDRCFKCNAPKP 379
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: D7FHH5_ECTSI (Ewing sarcoma breakpoint region 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 8.460e-17
Identity = 73/87 (83.91%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:  112 YNRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGG-YERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXX--GYNRRPGDW 363
            YNRRPGDWECP+CGNNCFASR+ECNRCQTPKP GAGG  Y   XXXXX Q   XXXXXXXXXXXXXXXXXXXXXXX  GYNRRPGDW
Sbjct:   49 YNRRPGDWECPNCGNNCFASRVECNRCQTPKPVGAGGXXYGEXXXXXXXQGGGXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDW 135
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A7S2STL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STL9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.200e-17
Identity = 68/112 (60.71%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:  115 NRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGGGYERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGG 450
            +RR GDW+CPSCG   FAS+  C +CQTP+P+G GGGY   XXXXX  XXXXXXXXXXXXXXXX            +RR GDWDCP CG HCFASR+ C +C T  P G GG
Sbjct:   37 DRRAGDWDCPSCGALVFASKSNCYKCQTPRPDG-GGGYGXXXXXXXXXXXXXXXXXXXXXXXXX------------DRRAGDWDCPSCGAHCFASRSTCFKCGTPNP-GPGG 134
[Close]
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Match: A0A7S3SKD9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SKD9_9SPIT)

HSP 1 Score: 91.3 bits (225), Expect = 2.070e-16
Identity = 131/265 (49.43%), Postives = 138/265 (52.08%), Query Frame = 1 
Query:  121 RPGDWECPSCGNNCFASRIECNRCQTPKP-----------------------------------------EGAGGGY------------------------------ERSXXXXXYQXXXXXXXXXXXXXXXXXXXXXXXXXXGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGGGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-------------SKRPGDWDCPGCGYNCFASRMECNRCHTPKPAGGG 663
            RPGDW CP+C +N FAS+  C RCQTPKP                                            GGGY                                 XXXXX  XXXXXXXXXXXXXXXXXXXXXXXX  G N RPGDW CP C  + FAS+T C +CQT KPAG G G F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                RPGDW CP C  N FAS+  C RC TPKP GGG
Sbjct:   79 RPGDWTCPNCNSNVFASKNACFRCQTPKPGMSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYGYGNMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMGGNFRPGDWTCPTCNANVFASKTSCFKCQTPKPAGGGYGGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRPGDWTCPNCSANVFASKNSCFRCQTPKPEGGG 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5986.13642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL5_9PHAE1.060e-5883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIQ0_ECTSI1.600e-3976.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8L8_9PHAE4.720e-3275.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6C3G0_DIALT1.090e-2855.49Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2V0NK80_9CHLO6.150e-2869.49Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A5J4XE95_9CHLO7.100e-2248.59RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A7S2SNJ9_9STRA7.930e-1934.97Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
D7FHH5_ECTSI8.460e-1783.91Ewing sarcoma breakpoint region 1b n=1 Tax=Ectocar... [more]
A0A7S2STL9_9STRA9.200e-1760.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3SKD9_9SPIT2.070e-1649.43Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5986contigH-paniculata_contig5986:3468..8744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue1e-34
Seed eggNOG ortholog2880.D8LIQ0
KEGG koko:K13098,ko:K14651,ko:K18270
KEGG Pathwayko03022,ko05202,map03022,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.RNA binding
EggNOG OGsKOG1995@1,KOG1995@2759
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-25_002370.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041,ko04131,ko04147
Exons3
Model size1543
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5986.13642.1prot_H-paniculata_contig5986.13642.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5986 4339..8744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.1421864-UTR-H-paniculata_contig5986:3467..43381622930661.1421864-UTR-H-paniculata_contig5986:3467..4338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5986 3468..4338 -
1691481394.2649822-UTR-H-paniculata_contig5986:3467..43381691481394.2649822-UTR-H-paniculata_contig5986:3467..4338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5986 3468..4338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930661.1567945-CDS-H-paniculata_contig5986:4338..44321622930661.1567945-CDS-H-paniculata_contig5986:4338..4432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 4339..4432 -
1691481394.2823846-CDS-H-paniculata_contig5986:4338..44321691481394.2823846-CDS-H-paniculata_contig5986:4338..4432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 4339..4432 -
1622930661.1767936-CDS-H-paniculata_contig5986:7794..80101622930661.1767936-CDS-H-paniculata_contig5986:7794..8010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 7795..8010 -
1691481394.2904036-CDS-H-paniculata_contig5986:7794..80101691481394.2904036-CDS-H-paniculata_contig5986:7794..8010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 7795..8010 -
1622930661.1946814-CDS-H-paniculata_contig5986:8382..87441622930661.1946814-CDS-H-paniculata_contig5986:8382..8744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 8383..8744 -
1691481394.298072-CDS-H-paniculata_contig5986:8382..87441691481394.298072-CDS-H-paniculata_contig5986:8382..8744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5986 8383..8744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5986.13642.1

>prot_H-paniculata_contig5986.13642.1 ID=prot_H-paniculata_contig5986.13642.1|Name=mRNA_H-paniculata_contig5986.13642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MSYYNDGGGHGHGGGGGGGGGGSWGGGGERGGGGGGGYNRRPGDWECPSC
GNNCFASRIECNRCQTPKPEGAGGGYERSGGGGGYQGGGGGGYGGGSGYH
GGGGGYGGGGGGGYNRRPGDWDCPGCGNHCFASRTECNRCQTQKPAGEGG
GSFGDRGGGGGYHGGGGGYHGGGGGYGGGGGGGGGYSKRPGDWDCPGCGY
NCFASRMECNRCHTPKPAGGGGY*
back to top

mRNA from alignment at H-paniculata_contig5986:3468..8744-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5986.13642.1 ID=mRNA_H-paniculata_contig5986.13642.1|Name=mRNA_H-paniculata_contig5986.13642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5277bp|location=Sequence derived from alignment at H-paniculata_contig5986:3468..8744- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTACTACAATGATGGGGGCGGTCACGGTCACGGTGGCGGCGGTGG
CGGTGGCGGTGGTGGCAGCTGGGGTGGAGGGGGTGAACGCGGGGGTGGAG
GCGGCGGCGGCTACAACCGCAGACCCGGCGACTGGGAATGTCCTTCATGC
GGAAACAACTGCTTCGCCTCACGCATCGAATGTAATCGTTGCCAGACGCC
CAAGCCTGAGGGCGCCGGCGGGGGATACGAGCGCAGTGGAGGCGGCGGTG
GCTACCAGGGTGGTGGTGGTGGTGGATACGGTGGGGGAAGTGGCTACCAC
GGTGGGGGAGGTGGCTACGGTGGAGGCGGAGGTGGCGGCTACAACAGAAG
GCCGGGAGACTGGTGAGTGTGATTGGTTATGGGGATACCAAGATGTTAGA
CTGATGTGCCCTAGTGTTTTTGTTCTGTCGTTGGCTGTGGAGGTGGCGCA
CTGTTGATGTCGCCACGATGTACTGAGATGGTTTTTTCTGTGTGCTAACG
TTATTTTGATGCAGACAGTTGGGTGTGTGGTACTGAGGTGCAAATTCAGC
TCTTCAAGCACAGCTGGTCCCGGAAGTATCCAGTTTTGAGCTTTTTCGTC
TATTTTGGGGCGTGGCAACGGTAACTTCGCCAAAGTGCCACTCCACACGC
ACAATCATATGTCCATTGCCCCAATAACTCTTCTCCGTGCCCCTCCCTCG
CGCGCTTGCTCTAAATTACCCGATCCACGAGTAGGGACTGCCCCGGCTGC
GGCAACCACTGCTTTGCCTCCCGCACTGAGTGCAACCGCTGCCAAACTCA
GAAGCCTGCAGGCGAGGGCGGGGGAAGTTTCGGTGATCGTGGGGGGGGGG
GAGGGTATCATGGCGGTGGGGGCGGTTACCACGGTGGGGGAGGAGGCTAC
GGTGGGGGCGGTGGCGGTGGCGGCGGCTACAGCAAAAGGCCCGGTGACTG
GTAAGTGATTAGCTTGATTTCATTATTTTGCTCATATCACGTGTTTGTCG
GGGGTGGTAGCGGTGCGCAGCCGGATGGGGGAATGTTGGATATTTTCTCT
AGCAAAAAACAACCAGTCAAGCTGCAGCAACAGTTATATGCACGGGATTT
TACTTTCCCATAGTAAAATTAAACGCGCACAGCAGAGTGTCTCTACTTAT
CTTGTCGTTCGTCGTTTCAGAGTACCGCGTGTTCACTTGGCGCGTCCTGG
CCTTGTGTATTGGTTCTATGCGTTTTCTAGTTTTCAATGGGACAAGCCCA
CCGGCTGTGCCCAACGGTTGAAGGGTTGACGGCAGTGTTCTACATCTGCA
TCTGTGGACACAGTCCCCTTCAAAGGATCATGCGTCATGCAAAACATGTC
ATGGAGCCCATCGGTATTTCCTCCTTCCACGACGCAGAAAAGTGCGTGCG
CACTCCACTTTACGTTGCGCGTGCGTACATGCATTATCCCGATGTGCTTG
CTCTGTTGGCATAAAATATATGACATGGTTGCGACGCCGTCCGCGTATGT
GGCTCAGGCAAGTTATTCCTCATGTTTGAATCCCGATCTCTTCCAATTGT
CAGAACGTGTGGGCGGTAGGCGGGAAACTGGAAGTCGATTGATTATCTGT
ACACATGAGCTCTTATATTTTTGCCAATGTTTAGAGCAATCACATCACTG
CTTCGATCGTCGTGCCGCCGGTTGGTGCTTCTCAACGTAGATCCTGTCCT
GTAGAGGGGAATATTATGCCACCTATGCAGTTTGGTACAAGCTGTGTACT
AGCCATTTGTGACCCCGCCCTCGAGGCAGTAACACACTTGCGCTCAGTTC
TTCCAAGAGGTATAGTATGGATCAGCTACCATGCTCGCCTTCCCTCCTTA
TAATTGGTGGCTTGTGTTCGGTCTCCTCGTTCATTCAATCGGGTTGTGGA
TCGACGGCTGCGGTGATTCTCGAACGGAGTAGCGTCCTGAATGGGTCAGA
GAGGATTGATTTGGGTTCAGTTCGATTTTGGAAGTTCAATGACTTGCGTT
GGTTTTCGAAACAATTTGTGCGATCAAGAAGGCGCAGTAAATAGTTGGGG
GAGTGGGTGGGGCCTCGATTCAACCACTCAATCATTCTTCCTCCTGTACC
TTGTTATTACCGGTTTAGTATTTTAAGCTCCCTGTTTCCACAAAGAACAC
AACATGGCATACACCAGTCCATGATGTCGAACTATTATTTTATGGAACAA
AATGGCTTTACTGATATATACCCAAATCCACGGAAAATATAGAAAGTTTT
CTGCTTGGAGCATTCCGCCCACCATCATCAATCACCCCTCCACCGTCACG
TCGTCTTTTCGTGTCTTGGCCGCGGGGTAACATGTACAGCATATAAGTGG
ATGAATTTAATTCTCCACTTTATAGTATCAGTATTTTTTCCGTTCTGGTT
CTCGTGGTTTTGTGAACGGCTAAGTATGTTCGACCTTTGGGGATCCGAGT
GTAGTATTTTCCCCCCTTTAAACATGAACGAGTTTTCGAGTTCGAACGGA
TCCACCGGTCGGGTCCGGGTTGTTAGTTCGCTACCCCTTTTGTCGTGCGG
TGCGGTGCGAATGGGAAATTCGAGTTGGAGCGGTTGAATAGTCTCACCAA
AATAGGTTTCCACTCCCCAAGGTAAGGTTAGTAGTGTACATGTATTCCCC
TCTTTCGTGCAGCTCGAACCTCACTGTATCAAGAATTAACCGTTGTGTCG
GTCACGATTACACCGCTTCAATCGAAGATTGGTTAAAACTTGTCAACTTC
ATCCTGGGATGGTAAAGTTGGTCTTTTTGTCACCTGGAAGGTGTCGGTTG
CAATTTTGCGACATGTAACATTCCAACTTCAACGTATCTAAATGTAGCGG
TTACGTTGGAAGGATTTATCAGCTGTGCGGTGGCAGACTCATGCCATCTC
AACACGCCCCCTCTTCCCCACCTCTTTGTTTTACCTTTATCGCCATATCG
CTTTTATCGTGATGTGGAGCCAGCCTACTTGCATGCTGTTGTATGTGCGG
TCGTTACAGTGGAAGTATGAAAGGGAACTTTTTAGTCCACGCTGTACCAG
TAGGTTGTCCCCGAGCACCCAGCATAGATACCAGCAAGTAAAAACACTAC
GATGGAAATTCACTTGCATGCAAAGGTAACCAGGTCAGCGCAGCTCACCC
CTTGTACGTCGTTTGTCTTGACACGGTATATCGCGATCGTCGGTGCAGGG
ATCCATGTGCCCGTAAACGCGGCAATCCCGGTACAGTTTTACCATTTCCG
TCGAATGCAATGGTTGAGGAATAGAGATTTAGCATACTACGGTGGCAGGT
GACCTCAGGCTCTGAAAGATTCGCCATTTGTGTTCCACACAAGGAACCTC
TCTCAAACGGAGCGGATTCGACCTCTTACCAATGAAGACTCGTCGTAACA
AGTGGTAGTTGAAGTGGCACTGGTAGTTCCGGTACGAAGATTATGCCAGA
AAAAGCTGTCAACCGTGGAGAAGTACCACAGCAGAACCAGCAGGGGTTGA
TCATGGTTGATATCGAATTGGTCGTGTAGGGCAATCCCGCACGAAGACCC
GCGGCCTGTTCCATCTTCGGTGGAATGAACCCAAAATCGATATTTTTTTG
CAGTAGAAATCGAACTGGTGCAGATCTGTAAGAGTTACTCTGACGGTACC
GATAATATCTACGCTGAACCTGCAACGATAAGGAGTCGAATTGGGCCCCA
GTATTGTCTAAAATTACGTGGACGGACAGCCGGTTCGCGGGCAAGCAACG
CTCCTCGGTCCAGGTTTGTGGAGGGGTCGGGCAATATGCCAAAGGGAGAC
TTCGGTACACGAAGAAGTCATGCGAAGTAGATCTTTTTACGGATTGTAGT
GGATGATTCCTGATCGAAGCCGGGGTTTGTGTCTCTCAAGGCTGTAGTTG
TCTTGCTGCTCCATCGCGCTGTCACCATTCCAAACCTCAGCACCGATCAT
GTCGAATGTTTTGATGCCGAAAATATGATCAAATTGTCCTTTCAGTATTT
TGACGTGAATATTTTACTTCCTTGAGTAAGCACACATTGAAGTTGTCTAG
GGTATCAAAATCGAATACATCAGTGGTACGTGGTCGGAAATGGTTGAAGC
TGGTTGTTCATGATGTGGTGACTATCGCACGGAAAAATTCCTCTGCTGCA
GCCGTGGGGAGGGCATCGCCTTTCCCCCCAGGACTCACGCTTCCTCACCG
CCCACAGAAGAGGGCACCACTCGTGACGTCGCTTTGTTTTGTTACTTCCT
TGATATATTCGAAGATATTGACCACCTGCTGCTGTGGCCCTTCTCCCCGT
CACACGTTGTAGGGACTGCCCCGGATGCGGCTACAACTGCTTCGCCTCCC
GCATGGAATGCAACCGTTGCCACACACCCAAGCCTGCTGGTGGCGGGGGT
TACTAAGAACAACAAAATCACTGTACTGGAAACGGTCGGTACTTCCGACA
GCCATGATGCGACACGGACCACAGCCCGCAAGTGCGTCATGATCTACTTT
CATGGTTGAACAAATTTCTTGCATTCTCGCGGTCTGCGGGAGGATGAGAG
AGTGGTCTCCATTTTGAAGGTCTCGCTCTCATTCCCCCTCTCTTGGTCCT
GTATCTATCGTGGCGTTGGCACCCGAACGCTGGTCGGCGTCGCGGTTGGT
GAATTTCTGGATGGAGAAGGGTGCGGTGGATGCGTTCTAGAGAGCACGCA
TCTACTCCGTGCCGTCTAGAATGTTGTTTTTGTGTGTGTGTGTGTTTTTT
TTTTTTTTCAGGTACATCCTCTCACTTGCAAAATATGATTTTACCGGCGT
CACGCGCGGCCGAGAATTGGAAGGGGGTTGGGGGAGGAGGGCGAGCAGGC
AGCCCATCCCGAGATGTTTTCGAAGCGAAGGGCCGGGGCGTGTGTTTGGT
GTCTGTTGTAGATCACATGTGTGGAGCCGCTTCAATATCTAAATACTGGT
TTTGAGTTTGCGCTCTAGCGCTTAGATGTGCGCACCCAAGCATGAAATTC
AAGAGCGGAATCGATAGTATCAGTATTGAGTGTGGTCGGGCCAGGGAGCC
AGTAGAGGAAAAAAAATGTGGAGGTTGAGTTCCAGGTGTCGCTGCGATGG
GTAATTGGTTTTTGGTCTGTCGGACGAAGGGAGGAAGGGGGGCGAGTTAC
GTTAACGTTGGTGTCTTTGTCAGCAGGGGAAAATGTGAGGCAGGTACGTG
TGGGGGTTGAGCGGGGGATACTTCGTGTAGTTTGCGTTTTGGGGGGTCGC
GTTTTCAGGCAGTCCGGACGAGGGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5986:3468..8744-

>mRNA_H-paniculata_contig5986.13642.1 ID=mRNA_H-paniculata_contig5986.13642.1|Name=mRNA_H-paniculata_contig5986.13642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig5986:3468..8744- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTACTACAATGATGGGGGCGGTCACGGTCACGGTGGCGGCGGTGG
CGGTGGCGGTGGTGGCAGCTGGGGTGGAGGGGGTGAACGCGGGGGTGGAG
GCGGCGGCGGCTACAACCGCAGACCCGGCGACTGGGAATGTCCTTCATGC
GGAAACAACTGCTTCGCCTCACGCATCGAATGTAATCGTTGCCAGACGCC
CAAGCCTGAGGGCGCCGGCGGGGGATACGAGCGCAGTGGAGGCGGCGGTG
GCTACCAGGGTGGTGGTGGTGGTGGATACGGTGGGGGAAGTGGCTACCAC
GGTGGGGGAGGTGGCTACGGTGGAGGCGGAGGTGGCGGCTACAACAGAAG
GCCGGGAGACTGATGAGCTACTACAATGATGGGGGCGGTCACGGTCACGG
TGGCGGCGGTGGCGGTGGCGGTGGTGGCAGCTGGGGTGGAGGGGGTGAAC
GCGGGGGTGGAGGCGGCGGCGGCTACAACCGCAGACCCGGCGACTGGGAA
TGTCCTTCATGCGGAAACAACTGCTTCGCCTCACGCATCGAATGTAATCG
TTGCCAGACGCCCAAGCCTGAGGGCGCCGGCGGGGGATACGAGCGCAGTG
GAGGCGGCGGTGGCTACCAGGGTGGTGGTGGTGGTGGATACGGTGGGGGA
AGTGGCTACCACGGTGGGGGAGGTGGCTACGGTGGAGGCGGAGGTGGCGG
CTACAACAGAAGGCCGGGAGACTGGGACTGCCCCGGCTGCGGCAACCACT
GCTTTGCCTCCCGCACTGAGTGCAACCGCTGCCAAACTCAGAAGCCTGCA
GGCGAGGGCGGGGGAAGTTTCGGTGATCGTGGGGGGGGGGGAGGGTATCA
TGGCGGTGGGGGCGGTTACCACGGTGGGGGAGGAGGCTACGGTGGGGGCG
GTGGCGGTGGCGGCGGCTACAGCAAAAGGCCCGGTGACTGGGACTGCCCC
GGCTGCGGCAACCACTGCTTTGCCTCCCGCACTGAGTGCAACCGCTGCCA
AACTCAGAAGCCTGCAGGCGAGGGCGGGGGAAGTTTCGGTGATCGTGGGG
GGGGGGGAGGGTATCATGGCGGTGGGGGCGGTTACCACGGTGGGGGAGGA
GGCTACGGTGGGGGCGGTGGCGGTGGCGGCGGCTACAGCAAAAGGCCCGG
TGACTGGGACTGCCCCGGATGCGGCTACAACTGCTTCGCCTCCCGCATGG
AATGCAACCGTTGCCACACACCCAAGCCTGCTGGTGGCGGGGGTTACTAA
GGACTGCCCCGGATGCGGCTACAACTGCTTCGCCTCCCGCATGGAATGCA
ACCGTTGCCACACACCCAAGCCTGCTGGTGGCGGGGGTTACTAA
back to top