mRNA_H-paniculata_contig59639.13611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59639.13611.1
Unique NamemRNA_H-paniculata_contig59639.13611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.240e-78
Identity = 114/148 (77.03%), Postives = 131/148 (88.51%), Query Frame = 1
Query:    1 FNPEDFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRI 444
            +NPEDFVF+LGGPEPD + + GFQ R A VNQ+PAL+GQG++M L NL+PCAINLPH HPRATEM+YVI+GE LRVAFVEEN GEGAVVND++QGD  FFPQGLIHYQQNLDCEPAT+L+ALNNEDPG +TITTRFFELP EAIQ  +
Sbjct:   36 YNPEDFVFSLGGPEPDALVD-GFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASV 182          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.830e-75
Identity = 114/149 (76.51%), Postives = 125/149 (83.89%), Query Frame = 1
Query:    1 FNPEDFVFNLGGPEPD-DIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRI 444
            FNPEDFVF LGGPEPD  +D  GFQ R A + QIPAL+GQG+AM L NL+ C INLPH HPRATEM YVI GE LRVAFVEEN GEGAVVND+SQGD TFFPQGLIHY+QNL CEP T+L+ALNN+DPG VTITTRFFELPSEAIQ  +
Sbjct:   37 FNPEDFVFTLGGPEPDAPVD--GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASL 183          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG)

HSP 1 Score: 147 bits (370), Expect = 3.160e-41
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 1
Query:    1 FNPEDFVFNL-GGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRI 444
            FN EDF+ +L   P+  ++ + G   ++ N+  +PAL  QG+AMVL NL PC  NLPH HPRA+E +YVI+G + +V F+EEN G   +VND+ QG ATF PQG IHYQ NL CE A  ++A NNEDPG +TI  +FF+LP  AI   +
Sbjct:   45 FNHEDFITDLLHNPKSTEVGKGGSLAKM-NLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQGNV-QVGFIEEN-GAKVIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASL 190          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 1.100e-35
Identity = 69/147 (46.94%), Postives = 90/147 (61.22%), Query Frame = 1
Query:    1 FNPEDFVFNLGGPEPD---DIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAI 432
            F+ EDFVF+    E     D D  G  ++ AN+N  P ++   +A   F + PC INLPH HPR TE  Y+IEGEL  V FV E+     V+NDI    +TFFPQGL+HYQQN+ CEPA ++S L++ DPG++ I      LP EAI
Sbjct:   22 FDAEDFVFDFSDFETGVRVDSDGNGGSSQPANINTFPVVQVANMAQTRFRIAPCGINLPHVHPRGTESAYMIEGELT-VGFVMESGR--TVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAI 165          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 2.480e-35
Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 FNPEDFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQ 435
            F+ EDFV +    +P +    G  ++ AN N +P ++   +A   F + PC INLPH HPR TE +Y+IEG L  V FV E  G   ++ND+    +TFFPQGL+HYQQN+ CEPA ++S LN+ DPG++ I     ELPSEA++
Sbjct:  119 FDAEDFVIDFA-TQPLESTGLGGTSQPANRNNVPVIQASNMAQTRFRIAPCGINLPHVHPRGTESVYIIEGALT-VGFVTE--GGRLILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPAALAELPSEALE 259          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A433PCS2_9FUNG (Spherulin 1a n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PCS2_9FUNG)

HSP 1 Score: 129 bits (325), Expect = 1.270e-34
Identity = 70/143 (48.95%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    7 PEDFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFE-LPSEAI 432
            P DFVF+   P        G +   AN    PAL G GVAM +  L PC INLPH H RATE++Y+++G+     F +EN G   V+N + +G AT FPQG IH+QQNLDCE A +++A NNEDPGV TI T F   LP+E +
Sbjct:   57 PNDFVFDFLNPPSGVATGDGGKLVSANAANFPALIGHGVAMTIGYLGPCGINLPHTHLRATEIIYIVQGKF-ETGFFQEN-GAVFVMNTVEKGMATIFPQGSIHFQQNLDCEDAIFVAAFNNEDPGVSTIDTNFIGGLPAEIV 197          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A814L9M3_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814L9M3_ADIRI)

HSP 1 Score: 127 bits (318), Expect = 2.130e-33
Identity = 65/151 (43.05%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    4 NPEDFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFF-ELPSEAIQVRIPAL 453
            NP DF+F+            G +   A  +  P L G GVAM L  L PC INLPH HPRATE+ Y ++G   +V F +EN G   ++N+I +     FP+G IH++QNL+CEPAT+++A N+EDPGV+TI   +F  LP+  I   +  L
Sbjct:   73 NPSDFIFDFNNATTGVSRGTGGRTVSATASNFPGLIGHGVAMTLGFLGPCGINLPHTHPRATEINYSVDGHF-QVGFYQEN-GAAFIMNEIQKNQVAVFPKGAIHFEQNLNCEPATFVAAFNSEDPGVLTIANAYFGALPATVIGANLGGL 221          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: UPI0020087ADD (RmlC-like cupin domain-containing protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020087ADD)

HSP 1 Score: 126 bits (317), Expect = 3.320e-33
Identity = 70/144 (48.61%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   13 DFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRI 444
            DFVFN     P      G     ANV   PAL G G+AM L  LEPC +N PH HPRATEMLYV+ G L     + EN G   V N I+ G A  F QG IHYQQN  C+P  +++ALNNEDPGV +I  R+F LP + +   +
Sbjct:   45 DFVFNFFNTTP--AKSAGGTALNANVANFPALVGNGLAMTLGFLEPCGMNTPHTHPRATEMLYVVNGTLT-TGMIAEN-GARFVFNKINTGSAQVFLQGSIHYQQNELCDPVMFVAALNNEDPGVESIAQRYFGLPPDVVAASL 184          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: M2RQM8_CERS8 (Cupin type-1 domain-containing protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2RQM8_CERS8)

HSP 1 Score: 128 bits (322), Expect = 4.540e-33
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   13 DFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRI 444
            DFVF+   P    +         A+V+  PA+ G G+AM +  L PC +N PH HPRATEMLYV+ G ++    ++EN G   V N++  G AT FP+G IH+QQN  CEP T+++ALNNEDPGV +I  RFF LP + +   +
Sbjct:   54 DFVFDFLNPSSGVVTGAAGHLVSASVSNFPAVVGNGMAMTIGFLGPCGMNTPHTHPRATEMLYVVNGSIIS-GTLQEN-GARFVFNEVPGGSATIFPKGSIHFQQNNGCEPITFVAALNNEDPGVDSIAQRFFGLPPDIVSATL 195          
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Match: A0A0L0G050_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G050_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 8.610e-33
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  100 PALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFFPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAI 432
            PAL    +A   F +EPC INLPH HPRATE++Y++ G +  V FV EN G GA++N++S   +TFFPQGLIH+QQN++CEPA ++S+LN  DPG +T+  + F LP+EA+
Sbjct:  141 PALVLANMAQTKFTIEPCGINLPHIHPRATELVYMVSGAVT-VGFVGENGG-GAIMNNLSADMSTFFPQGLIHFQQNMECEPAVFVSSLNGVDPGTITLPEQLFALPTEAL 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59639.13611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV79_9PHAE3.240e-7877.03Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
D8LDW6_ECTSI2.830e-7576.51Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A507FDZ0_9FUNG3.160e-4151.01Cupin type-1 domain-containing protein n=2 Tax=Chy... [more]
A0A0L0GAB9_9EUKA1.100e-3546.94Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FUE8_9EUKA2.480e-3545.52Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A433PCS2_9FUNG1.270e-3448.95Spherulin 1a n=1 Tax=Endogone sp. FLAS-F59071 TaxI... [more]
A0A814L9M3_ADIRI2.130e-3343.05Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
UPI0020087ADD3.320e-3348.61RmlC-like cupin domain-containing protein n=1 Tax=... [more]
M2RQM8_CERS84.540e-3345.14Cupin type-1 domain-containing protein n=1 Tax=Cer... [more]
A0A0L0G050_9EUKA8.610e-3353.15Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59639contigH-paniculata_contig59639:136..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D7G6F4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.4210556-CDS-H-paniculata_contig59639:135..3991622930657.4210556-CDS-H-paniculata_contig59639:135..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59639 136..399 -
1691481392.5280437-CDS-H-paniculata_contig59639:135..3991691481392.5280437-CDS-H-paniculata_contig59639:135..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59639 136..399 -
1622930657.448635-CDS-H-paniculata_contig59639:676..8681622930657.448635-CDS-H-paniculata_contig59639:676..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59639 677..868 -
1691481392.5405588-CDS-H-paniculata_contig59639:676..8681691481392.5405588-CDS-H-paniculata_contig59639:676..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59639 677..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59639.13611.1prot_H-paniculata_contig59639.13611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59639 136..868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59639.13611.1

>prot_H-paniculata_contig59639.13611.1 ID=prot_H-paniculata_contig59639.13611.1|Name=mRNA_H-paniculata_contig59639.13611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
FNPEDFVFNLGGPEPDDIDERGFQNRIANVNQIPALEGQGVAMVLFNLEP
CAINLPHEHPRATEMLYVIEGELLRVAFVEENDGEGAVVNDISQGDATFF
PQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFELPSEAIQVRIPA
L*
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mRNA from alignment at H-paniculata_contig59639:136..868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59639.13611.1 ID=mRNA_H-paniculata_contig59639.13611.1|Name=mRNA_H-paniculata_contig59639.13611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig59639:136..868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACCCCGAGGACTTCGTCTTCAATCTCGGTGGCCCCGAGCCTGATGA CATAGATGAAAGAGGCTTCCAGAACCGCATTGCCAACGTCAACCAGATCC CCGCTCTGGAGGGACAGGGTGTCGCTATGGTCCTCTTCAACCTTGAGCCC TGCGCCATCAACCTTCCTCACGAGCACCCCCGCGCCACCGAGGTGAGCTC GCGCGAGTTCATTGTCGAACCATTACCAACACGTTACGTTGCTTTGGGTT GATTCGAGTGTGGTACAAAGACGAGACCTCGTATACTGTGTATACCGCGG ATGTCCCACGGCAATAGATGCTTACACTCGTCGTACCTCATCGCGCATCG TACGCGAGACTTATGAACGGGTTCCCGACCGAGGACACACATGCCAACTC GGTACGCCCCATGTCTCGCCCCACTTATACTCCTCCCGCGCTGTCAATTG GCTTTCCATCTCTGTGCAGATGCTGTACGTGATCGAAGGGGAGCTTTTGC GGGTGGCCTTCGTAGAGGAGAACGACGGCGAGGGGGCCGTGGTCAACGAC ATCTCCCAGGGAGACGCGACCTTCTTCCCCCAGGGCCTCATCCACTACCA GCAGAACCTCGACTGCGAACCCGCTACCTACCTGTCCGCGCTGAACAATG AGGATCCCGGCGTGGTCACCATCACGACCCGCTTCTTCGAGCTGCCCAGC GAGGCCATCCAGGTGAGGATTCCAGCACTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig59639:136..868-

>mRNA_H-paniculata_contig59639.13611.1 ID=mRNA_H-paniculata_contig59639.13611.1|Name=mRNA_H-paniculata_contig59639.13611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig59639:136..868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACCCCGAGGACTTCGTCTTCAATCTCGGTGGCCCCGAGCCTGATGA
CATAGATGAAAGAGGCTTCCAGAACCGCATTGCCAACGTCAACCAGATCC
CCGCTCTGGAGGGACAGGGTGTCGCTATGGTCCTCTTCAACCTTGAGCCC
TGCGCCATCAACCTTCCTCACGAGCACCCCCGCGCCACCGAGTTCAACCC
CGAGGACTTCGTCTTCAATCTCGGTGGCCCCGAGCCTGATGACATAGATG
AAAGAGGCTTCCAGAACCGCATTGCCAACGTCAACCAGATCCCCGCTCTG
GAGGGACAGGGTGTCGCTATGGTCCTCTTCAACCTTGAGCCCTGCGCCAT
CAACCTTCCTCACGAGCACCCCCGCGCCACCGAGATGCTGTACGTGATCG
AAGGGGAGCTTTTGCGGGTGGCCTTCGTAGAGGAGAACGACGGCGAGGGG
GCCGTGGTCAACGACATCTCCCAGGGAGACGCGACCTTCTTCCCCCAGGG
CCTCATCCACTACCAGCAGAACCTCGACTGCGAACCCGCTACCTACCTGT
CCGCGCTGAACAATGAGGATCCCGGCGTGGTCACCATCACGACCCGCTTC
TTCGAGCTGCCCAGCGAGGCCATCCAGGTGAGGATTCCAGCACTATGAAT
GCTGTACGTGATCGAAGGGGAGCTTTTGCGGGTGGCCTTCGTAGAGGAGA
ACGACGGCGAGGGGGCCGTGGTCAACGACATCTCCCAGGGAGACGCGACC
TTCTTCCCCCAGGGCCTCATCCACTACCAGCAGAACCTCGACTGCGAACC
CGCTACCTACCTGTCCGCGCTGAACAATGAGGATCCCGGCGTGGTCACCA
TCACGACCCGCTTCTTCGAGCTGCCCAGCGAGGCCATCCAGGTGAGGATT
CCAGCACTATGA
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