mRNA_H-paniculata_contig12147.1360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12147.1360.1
Unique NamemRNA_H-paniculata_contig12147.1360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12147.1360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12147contigH-paniculata_contig12147:216..5902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal
Ec32 orthologEc-28_001960.1
Exons4
Model size1895
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12147.1360.1prot_H-paniculata_contig12147.1360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12147 1745..2958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.961233-UTR-H-paniculata_contig12147:215..3891622928934.961233-UTR-H-paniculata_contig12147:215..389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 216..389 -
1691480672.841977-UTR-H-paniculata_contig12147:215..3891691480672.841977-UTR-H-paniculata_contig12147:215..389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 216..389 -
1622928934.9784143-UTR-H-paniculata_contig12147:422..17441622928934.9784143-UTR-H-paniculata_contig12147:422..1744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 423..1744 -
1691480672.8605285-UTR-H-paniculata_contig12147:422..17441691480672.8605285-UTR-H-paniculata_contig12147:422..1744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 423..1744 -
1622928935.0220814-UTR-H-paniculata_contig12147:2958..30011622928935.0220814-UTR-H-paniculata_contig12147:2958..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 2959..3001 -
1691480672.8921287-UTR-H-paniculata_contig12147:2958..30011691480672.8921287-UTR-H-paniculata_contig12147:2958..3001Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 2959..3001 -
1622928935.0358546-UTR-H-paniculata_contig12147:5795..59021622928935.0358546-UTR-H-paniculata_contig12147:5795..5902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 5796..5902 -
1691480672.9012127-UTR-H-paniculata_contig12147:5795..59021691480672.9012127-UTR-H-paniculata_contig12147:5795..5902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12147 5796..5902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.9950492-CDS-H-paniculata_contig12147:1744..18571622928934.9950492-CDS-H-paniculata_contig12147:1744..1857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12147 1745..1857 -
1691480672.8736563-CDS-H-paniculata_contig12147:1744..18571691480672.8736563-CDS-H-paniculata_contig12147:1744..1857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12147 1745..1857 -
1622928935.0094793-CDS-H-paniculata_contig12147:2822..29581622928935.0094793-CDS-H-paniculata_contig12147:2822..2958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12147 2823..2958 -
1691480672.882945-CDS-H-paniculata_contig12147:2822..29581691480672.882945-CDS-H-paniculata_contig12147:2822..2958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12147 2823..2958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12147.1360.1

>prot_H-paniculata_contig12147.1360.1 ID=prot_H-paniculata_contig12147.1360.1|Name=mRNA_H-paniculata_contig12147.1360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MHGDPKFPVANADPKPGDIMANMNFSDIAIATGITVASGVVCFTGVKGLR
AYTAAWGTSAGAIAGLSVAYQNSYGRLIGQRK*
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mRNA from alignment at H-paniculata_contig12147:216..5902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12147.1360.1 ID=mRNA_H-paniculata_contig12147.1360.1|Name=mRNA_H-paniculata_contig12147.1360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5687bp|location=Sequence derived from alignment at H-paniculata_contig12147:216..5902- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCATCTTCCTTTCCCCTCAGGCTGAACAGCAGTCCAGTCTGCCTGGT
GTGTACAGTGCAGTGGAACGTGACGTAAATTAGAGGAGGGAGGGGAAGCT
AAACAAGGTATGCGGGAATTTATTATTAGCTTTAGTTGCCTTTTATACTC
CTGCGAGTTTCACACCAGGGTTGACAGCGAGCGCCGCATTCCTGACACAG
TGGTCTGTCTTGAAGGGCTCCCTCTCTTCACACACACACTATATTAGATA
ACAAAAATGGAATAGTGATAACGCAGGTGTGAGTCGGTTGTTCTTGGCTC
GATGTGTCCTGTGTAGGCCTTGTTGGCTTGCTGCATGTCACCAACTCTAT
AGATCGCCTATATCCTGTAGACGTGAGGACCTGAAGGTGCTCCTGTGTGC
GCAAACCCCTTTGCACAGCACACTCTTGAATAGAGGTGATGGTGTTTTTT
GCCCATGTATAATCTGTATAGCAAGTGTGCGTTTATCTGTAGCACCTCCA
CTCAGTTGCCAAGGCCCAGGGAAGAAAGGATGAGATCACTGTGCCCTTGA
TCTGGCTGGAATCGGCAGTGTCTCTATTTCCCAGTTTGTCATGTTCACAA
AGGTGCGTACTTTAAATCGCTGCCAACGTCAGTACGATACAGTTTCAGGC
GAACATAAAATGGTGTGGTTTCACCACGACTCGAGATTGGGTAACACTCA
CGTTATGCCCAGTGTCACACAAGCTTTGCAGCATGGTCTGATGGATTTCT
ATCTCTCTTTTCCCGTATCTTCACCTACAGTCGCAAAAGCCGTTTTGTGC
CTCATGTTTCTAGATCTAGAGGTCCACGAACTCTCTGACACCACGGTTAC
CTGCTTGCAGTGTCGCTCTGCTTCGATTGAGCTTACAGATGAAGTTTATT
TAACAGTCAGTATACGGGGGGCTGTTTCGGAACAAAATACGCACAGTCTT
GGTGGGAATGACACGCGCGCGCAAGGACGCGAATCTATATTTTTTTCTTG
CCTGAGCCACCCGTCGTGTCTGGCCGGCGGGGTGTAGAAATTCCTACGTT
CCCCCCCCTCTCGCCTGTTTCTCGAAAAAATGGTCGTGTATGGGCAATGA
CACCCTAATGGTTGGATTATCCTGAAAACATCAGAATTGCATGTGAACGG
TTCTAAGTATTCAAGCATTCCGGTGTTAGCCGCTCATGAAAAATGAGAAC
CAACTTTTTCGATGGGAACGAAGTCCCATGGATTTTTTATGTTATATTAG
AAAACGGTGCGACCTGAGGTACCATCCTCGGAAAATGCGCTATTATTTTG
TCTTTACTTTTATTTTTCTGACATAAGGGTGCGTGCGATCTGTACGATCT
TCACATGTTTATGCGGTAGCTGATCCGTACCTTATTGATGGTAAGTGAAC
GCCCGTCTGCAGCAAATCCCCAGGGCTTACATGATCCGTACTAGTTCGAT
CCTAGCTGATCTGCATCCCGTCCTAAGCACGTTTCTTGTCCACAGCGAAT
CTGTACCCTACAGGTCGCATATATATATATGTCCACGGCGAATCGGTGCC
CTCATGGATTATTAATAGTAAGTCTGTCCGCGGCTGATCCCTAGAAGCTG
ATTCGCGCACCGATATTGAGCGATTTCGATGTGTAGGAATGTATCGTCTA
GAAAATATTCGCGCTCGCCCGGGTTACATGCCATGTGTGCACCATATGCT
ACTGCTGATCCACGTCCATGCCTGCAGCGTACAGCACGATACGTCACAAA
ATAGTAAATGGAACACACCATAATGTACAGTGTCACTCGGCTCGTAAAAG
GTAAAAGTCAAAACTGCAGGAGAGAGAAAAACAACGAAAACGAGATTTGG
AAAAAGAAATAAAGTATGACGTTTTTATGGTCGCATCCTTGCTTGCCAAT
CAAGGAAGAAAAATATAGGACCTGAGAATGTGATTTTCAATTTTTTGTGA
ATAGGGCCGGTGCTGTAGTGTACCGTGTACTTCGACGTGAATGCGGGCAA
CTAGTACTCCAGTTTGCATCAGTTTTAGACCGCAATTGTTGAAGAGCATG
GTTGAATCGAGTTTCTGTTACCGAAATCGCGCGTAAAGCAAAGCCTGCAA
GCCTCGCCCTAAGCCGAATCCTCACACCTCGCTCTTTGCTTGTCAAATCG
GATCCTGGTAGCGTTTATAATCGTCCAGACGCTGCGCCTTATCCGGCGTG
CCAACGACTAACATGATCCTTGAAGCCTGGGTTCGTGTGGCGTTCGGGCG
AAACACCACCGTGACAATCAAGAACTGATCAGTAGAGGTTTAAAATGGAC
GGCAAACCAAATAGCGTAACCTTGACTGGGTAACCACAAAGTAAAACCCC
AGGCATAACGTTCCGTGCCGTCTTGGCGTCATATTGCAGATGCGAGAGAT
TTCCATGATATCTCTGCTTGTGCATACCTTTTTATGAGGATGCCCCCTTC
TCCCCCCTGCCCTAGCGCACGCACGCACACGTGCGTCCATTCACCCGCTG
TACTGGGCAAATTTTTGTGCTCCGAAACGAGGCTGTAGTAAAGAACTTGA
TACGACATTTATGTGATTTGGTGCGGGACAAATGCCTCGGGTTCGTGCGA
ACCAACTTCGACTTCGACTTCGACGAGAAAAGATAACGTTACGGCTAGTG
TTCTGCAGGTTGGGTGCAGGTTTGAAAAATATTTGTTTCAAATCCTACAG
ATCAAAATACCGGATATTATATATGTTCGTTTCAAAGTGGTTTGATCAGA
CCTTATAAAGTGCATTTTCCTAGTCTCTAAACCTGCAAACAATGTCTATT
CTCGCCAGTGTAGTGTTGCGAAGGTAGCTGCTGCCTGCACGTCTGCACTC
ACAAACGCCTCTTGACCCGTTGTTCCCCCCCTCCGCGGCCGCTTGGACCA
GAAATTAAATTCAGCCGTCGATTGTTGGATCAATTTAGACAAAAATGCAC
GGAGATCCCAAGTTTCCCGTCGCCAATGCGGACCCCAAGCCTGGTGACAT
AATGGCAAACATGAATTTTTCGGACATCGCGATAGCGACGGGAATAACTG
TTGCTTCCGGGGTGGTTTGCTTTACGGGAGGTGAGTGACAACATAGTTTG
TTTTTTTCGAAATATCATAACCCATTCACCCATCGAAAGTCCCATGGACA
AATAGTTCAACCAGACTAGAATATAAAAACGCCCAATGTACACGTAAAAT
TCCCACAAGTCTCCGTCGAGGGCAAACCCTATTTCACCTTTGACAACACC
AAGATATACCTGGTCTAGCTCTAGTCCAAAGGGATGGGCATGGGTATTGC
AAGCGTTCCCCCGTACAAATAAGTACTTTCCCCCAGTTTTGGATTGTTCG
GACGCATAGAAATGCTGAATCCTGTTCACTCGCTTGACTAGCATGTGAGC
AGTCGGATTGTAAATGGTCCGTAGTAAATTTGAAAAATAAAGGTGCTCAT
GCCGATGCTTGAGACAAGAATATTTTCCAATGTTCATTGCAAATGCTCGA
AGCATTCGTCTTTATGCGGGGTCGTTTTACCCCATGAAAAAAGCTCCTTT
ATCGTCTTAGTAGGACCATTAAACAGAAACGCTGACCACTGTTACGAGGT
GTTTCCCTGTTTTCCGGGAATATCTCGTCAGACGCGTCGAGTGAGTGAGT
GTCTACACCTCGGATGGGACGTTATTTTGAAGTTGAGATTATTTCAGAGA
ACCGTAAACCTTCTATCAATATTCATGGTGGAACAATAATTTGAAAGTGC
ACTCGAATTCAGCTAGAGTCAATAGACACTCCCACGGAGGTATCAAGAAA
AACTCAACGCTGTTGTCGATCCTCAATGGGGCAGACGGCTCCTATCGTCG
TGCTGTGACGATCGTGTTTCTTTATGACCTTCGTCGACCTTCATGCGAAG
TGTATGAAGAGTTTCAGTTCGTACATACAATAGAACCTCATCTCTAGGTA
CTTGCTTCAATACGTGTGCCCGCAATAAGCTTGGGTCTGTTTCCGTTTGA
TCATGTGTTTTGTGTTTTTCTCGCTGGCCCACGGCAAACCCCCAGTCAAA
GGGCTCCGAGCGTATACAGCAGCATGGGGCACATCGGCAGGGGCGATAGC
AGGGTTAAGTGTCGCCTACCAAAACTCTTACGGACGGCTCATCGGCCAGA
GGAAGTGATTGCCGAACGGAGAACGGAGTTAGCCAAGCAGATAGGTCGAG
GGCGAGGCCAAGGGGATGTAAAAGGAAAATTGTGACGTGTGTTGAAAGGC
ACCTCTATGCTTACGTGGTCGGATACATGTCTCAACGTTCGGGAGCAACG
GCTGGGGTGGCACTCGTAGGAACATGGACTATTTATAGCTTCTGTGTCGT
CGCATGTGGGGGCCGAATTTGAATATGGCATACTCGCGTTGCTATCAATT
TATCAAGGGATGATATTTGTCGTCTTGTTTGCCGAAGTAAGTCATGCTTT
TCATGCTATGGATAATGAACTACGAGTCGGCGTGTGGAGGGTTTGACCAA
CGGGTTTGAGTAGTGGGTCTGAGCGTTGGATACATCTACACCTATACTAG
GCTAAGCGACTAACGTGGTGTCAGAAAAAAAAATGAATTGAAGACATGTG
GCACTGACGTCAGTAGCTATAAGCTGCCCTAACGCTGGGCTTGCGTGAGG
TTCCACAACTACGACGGTGTATGCCAATTCCAACGGGACGATGGATGCAG
CCTGGTGTGGCGGCAGGGCTCGGTACGCCGATGGCCATAAAAGAGATGTG
CCCAGACTTTCACCGGGTTCGTTTTGCTCGCCTATCCGAAGCCTTTTTCG
TGTATTCTGAGATACAGCTCGGATGAAAGACTACTGACTATTTAATGCAC
GCCTTAGGCCTCTGCACTGTCTAGTTCCTACCGCAGCTCCGGCGGTATCG
ATAGATCTTTCTCTACCCTAAAAGTACATAACAATAATCGTGTTTACTTT
TATACCCTAAGCTACTGCAGGATGTCACAAACATATGCGACAGTGGATTC
CCAGCGCTTTCCATTTTCCTAATGAAATACGGCAAGTTCGGAATGCACAA
TAGAGTGCCCATTGAGTTCATATAGTGTAGGGTCAAGGCACAATGGTAGT
TGTGTGCTTCATCGCTCGGCTATGGTTCGGCTAAGATGAGTAATTTCCAG
TGCTTCAAAGGCTCTTGTTTTCGTCGCGCCAGGGGTCAGTAGAACAAGTA
AAGAAACCTATCCCCGATTTGGAGCCGTTCAATCGTTCGCGTTCCTTTCG
CTCTTTCCCCCTTCTCCTGAGCTTCCGTCTTTTCATTGTTTAAAATACCC
TTTACTTGTCTTTCAGCTCACACTGTACCCTCGAAAAGACCTACAGAGAA
ATCTAGGGTAGGGCAGGGCAGTTCAGCCTGGGTGAGTGGGTATGTACCCT
TCCCAGTAGACCAGGAGTGATTTTTTTTTTTGTTTGCCCCTCGATTTTAT
TTCTATTTTCAGAAAGGACGAAATTGTATTTTTTACCGAATAATAATATG
ACTTTTCCGAAATCATCTCAGTGTGTTATCGGGAGATTGAGGAAGAATGA
GGAGGAAAGGCAAAACGAGTCTAAGCCCTAATGGGTAGGGCAAGGCTAGA
GGGCAACCTTTGCCGGTGACCAGGACGGAAGTGTGATCAAGGGTTTTAGC
GTGTGAGGATTCTGTACTTTCTAGTGCAGTCTAAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12147:216..5902-

>mRNA_H-paniculata_contig12147.1360.1 ID=mRNA_H-paniculata_contig12147.1360.1|Name=mRNA_H-paniculata_contig12147.1360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig12147:216..5902- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGGAGATCCCAAGTTTCCCGTCGCCAATGCGGACCCCAAGCCTGG
TGACATAATGGCAAACATGAATTTTTCGGACATCGCGATAGCGACGGGAA
TAACTGTTGCTTCCGGGGTGGTTTGCTTTACGGGAGATGCACGGAGATCC
CAAGTTTCCCGTCGCCAATGCGGACCCCAAGCCTGGTGACATAATGGCAA
ACATGAATTTTTCGGACATCGCGATAGCGACGGGAATAACTGTTGCTTCC
GGGGTGGTTTGCTTTACGGGAGTCAAAGGGCTCCGAGCGTATACAGCAGC
ATGGGGCACATCGGCAGGGGCGATAGCAGGGTTAAGTGTCGCCTACCAAA
ACTCTTACGGACGGCTCATCGGCCAGAGGAAGTGATCAAAGGGCTCCGAG
CGTATACAGCAGCATGGGGCACATCGGCAGGGGCGATAGCAGGGTTAAGT
GTCGCCTACCAAAACTCTTACGGACGGCTCATCGGCCAGAGGAAGTGA
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