prot_H-paniculata_contig59489.13586.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig59489.13586.1
Unique Nameprot_H-paniculata_contig59489.13586.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length83
Homology
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.680e-15
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVG--GVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   +LTFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  212 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQ 286          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  191 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 265          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  463 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 537          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.420e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  527 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 601          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.420e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  671 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 745          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.440e-14
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  877 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQ 951          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.470e-13
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGG--VLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WVF+WK DE   +VKAKARLV +G  Q+ G   + TFSPT  A + R+  A AC    ++LH+D+E+AFVQ
Sbjct:  224 IDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAFACKYNMELLHLDIEEAFVQ 298          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVL--TFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            ID++WV++WK +E   ++KAKARLV +G  Q+ G     TFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:   60 IDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACKYDLELLHLDIEQAFVQ 134          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A0P1BQ67_9BASI (FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BQ67_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-7
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 0
Query:   11 IDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFV 82
            I S+WV+ WK+DEH ++V+ KAR+V RGD Q      T++P     + RV A++A  L   +   D + A++
Sbjct:  204 IHSRWVYTWKVDEHGNIVRFKARIVARGDQQSANAANTYAPVASMASWRVLASIATHLNWPIHQTDFDTAYL 275          
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   27 VVKAKARLVFRGDNQEVG--GVLTFSPTPPATTNRVAAALACALGRKMLHIDVEQAFVQ 83
            + KAKARLV +G  Q+ G   +LTFSPT  A + R+  ALAC    ++LH+D+EQAFVQ
Sbjct:  236 ITKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLLALACQYNLELLHLDIEQAFVQ 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59489.13586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE3.680e-1554.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.410e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE2.410e-1453.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.420e-1453.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.420e-1453.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.440e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6C0_9PHAE1.470e-1350.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLE6_9PHAE1.180e-1249.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0P1BQ67_9BASI1.040e-737.50FOG: Transposon-encoded proteins with TYA, reverse... [more]
A0A6H5KDR1_9PHAE2.590e-752.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..82
e-value: 8.0E-10
score: 38.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59489contigH-paniculata_contig59489:727..975 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59489.13586.1mRNA_H-paniculata_contig59489.13586.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig59489 727..975 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig59489.13586.1 ID=prot_H-paniculata_contig59489.13586.1|Name=mRNA_H-paniculata_contig59489.13586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VDDLSDEESPIDSKWVFRWKIDEHVHVVKAKARLVFRGDNQEVGGVLTFS
PTPPATTNRVAAALACALGRKMLHIDVEQAFVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2