mRNA_H-paniculata_contig59450.13581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59450.13581.1
Unique NamemRNA_H-paniculata_contig59450.13581.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7S0CP06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CP06_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.260e-16
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTP+C E  CIFCQSPKTNLCP+IR TQGKG
Sbjct:    7 GDHVIPCYTPQCCEASCIFCQSPKTNLCPKIRGTQGKG 44
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7S4A9I0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9I0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.870e-15
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTP+C ET C+FCQSPKTNLCP+IR+TQG+G
Sbjct:   88 GDHVIPCYTPQCCETTCVFCQSPKTNLCPKIRSTQGQG 125
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7R9UH38_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UH38_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-15
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTPEC E  CIFC SPKTNLCP+IR+TQGKG
Sbjct:   91 GDHVIPCYTPECREPSCIFCASPKTNLCPKIRSTQGKG 128
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7S2G3Y3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3Y3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.220e-15
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G KV+PCYTP+C E+DCIFC SPKTNLCP+IR TQGKG
Sbjct:   84 GDKVVPCYTPQCRESDCIFCASPKTNLCPKIRGTQGKG 121
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7S0CFQ3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFQ3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.180e-15
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTP+C E DCIFCQSPKTNLCPRIR+TQG+G
Sbjct:   62 GDHVIPCYTPQCAEPDCIFCQSPKTNLCPRIRSTQGQG 99
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A1V9ZHJ2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHJ2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.460e-15
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTPEC ++DC+FC+SPKTNLCP IRATQGKG
Sbjct:  603 GDHVIPCYTPECQKSDCVFCESPKTNLCPEIRATQGKG 640
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: F0Y281_AURAN (PKS_ER domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y281_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 9.600e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G KVIPCYTP+C E DCIFC SPKTNLCP+IR TQG+G
Sbjct:  136 GDKVIPCYTPQCREADCIFCASPKTNLCPKIRGTQGRG 173
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A067BUB6_SAPPC (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BUB6_SAPPC)

HSP 1 Score: 74.7 bits (182), Expect = 1.240e-14
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G  VIPCYTPEC ++DCIFC+SPKTNLCP IR TQGKG
Sbjct:  108 GDHVIPCYTPECQKSDCIFCESPKTNLCPEIRGTQGKG 145
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BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A7S3ZL63_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL63_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.310e-14
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G KVIPCYTP+C E DCIFC SPKTNLCP+IR TQG+G
Sbjct:  134 GDKVIPCYTPQCREADCIFCASPKTNLCPKIRGTQGQG 171
[Close]
BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Match: A0A8J2SFQ7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFQ7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKG 114
            G KVIPCYTP+C E DCIFC SPKTNLCP+IR TQG+G
Sbjct:  134 GDKVIPCYTPQCREADCIFCASPKTNLCPKIRGTQGQG 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59450.13581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0CP06_9STRA9.260e-1678.95Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4A9I0_9STRA2.870e-1576.32Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7R9UH38_DIALT3.100e-1578.95Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S2G3Y3_9STRA3.220e-1578.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0CFQ3_9STRA4.180e-1581.58Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1V9ZHJ2_9STRA5.460e-1578.95Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
F0Y281_AURAN9.600e-1578.95PKS_ER domain-containing protein n=1 Tax=Aureococc... [more]
A0A067BUB6_SAPPC1.240e-1478.95S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A0A7S3ZL63_9STRA1.310e-1478.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SFQ7_9STRA1.390e-1478.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59450contigH-paniculata_contig59450:606..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog44056.XP_009034664.1
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00167,RC00320,RC00649,RC01715,RC01734,RC02273
KEGG koko:K00121,ko:K01070
KEGG ReactionR00527,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.alcohol dehydrogenase (NAD) activity
EggNOG OGsCOG1062@1,KOG0022@2759
Ec32 ortholog descriptionformaldehyde dehydrogenase
Ec32 orthologEc-16_001960.1
EC1.1.1.1,1.1.1.284,3.1.2.12
COG Functional cat.C
CAZyCE1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930653.3939168-CDS-H-paniculata_contig59450:605..7281622930653.3939168-CDS-H-paniculata_contig59450:605..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59450 606..728 -
1691481390.8622427-CDS-H-paniculata_contig59450:605..7281691481390.8622427-CDS-H-paniculata_contig59450:605..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59450 606..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59450.13581.1prot_H-paniculata_contig59450.13581.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59450 606..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59450.13581.1

>prot_H-paniculata_contig59450.13581.1 ID=prot_H-paniculata_contig59450.13581.1|Name=mRNA_H-paniculata_contig59450.13581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
GAKVIPCYTPECMETDCIFCQSPKTNLCPRIRATQGKGAS*
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mRNA from alignment at H-paniculata_contig59450:606..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59450.13581.1 ID=mRNA_H-paniculata_contig59450.13581.1|Name=mRNA_H-paniculata_contig59450.13581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig59450:606..728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGAAGGTGATTCCGTGCTACACCCCTGAGTGCATGGAGACCGATTG
CATCTTCTGCCAGAGCCCCAAAACCAACCTTTGCCCTCGCATCAGGGCAA
CTCAGGGTAAAGGTGCGTCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59450:606..728-

>mRNA_H-paniculata_contig59450.13581.1 ID=mRNA_H-paniculata_contig59450.13581.1|Name=mRNA_H-paniculata_contig59450.13581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig59450:606..728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGAAGGTGATTCCGTGCTACACCCCTGAGTGCATGGAGACCGATTG
CATCTTCTGCCAGAGCCCCAAAACCAACCTTTGCCCTCGCATCAGGGCAA
CTCAGGGTAAAGGTGCGTCGTAGGGTGCGAAGGTGATTCCGTGCTACACC
CCTGAGTGCATGGAGACCGATTGCATCTTCTGCCAGAGCCCCAAAACCAA
CCTTTGCCCTCGCATCAGGGCAACTCAGGGTAAAGGTGCGTCGTAG
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