mRNA_H-paniculata_contig59425.13577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59425.13577.1
Unique NamemRNA_H-paniculata_contig59425.13577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A6H5JAF9_9PHAE (GH10 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAF9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.820e-11
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   22 LPAHADGVKAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            LP   DG  AQ  IY DIL ACL+E AFDG+T WGFTD HSW
Sbjct:  275 LPDGVDGETAQAAIYGDILEACLTEEAFDGLTLWGFTDLHSW 316
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A836CEC3_9STRA (Endo-1,4-beta-xylanase, family GH10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.130e-10
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   46 KAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            KA   +YS +L  CL+EP FDG+TFWGFTDKHSW
Sbjct:  269 KAAAAVYSTVLSTCLAEPNFDGVTFWGFTDKHSW 302
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: B7FTY0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTY0_PHATC)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   19 QLPAHADGVKAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            QLPA+   + AQ +I+ D+L A LSEPAFDG+  WGFTD+H+W
Sbjct:  337 QLPANLRQI-AQRQIFHDLLAAALSEPAFDGVWLWGFTDRHTW 378
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A7S1D1E2_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1E2_CYCTE)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-8
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   49 AQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            AQ++IY DI+ A L+EPAFDG+  WGFTD+H+W
Sbjct:  173 AQKQIYHDIIAAALTEPAFDGVWLWGFTDRHTW 205
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A7S2UN11_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN11_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   19 QLPAHADGVKAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            +LP +   V AQ +IY DIL A LSEPAFDGI  WGF+D+H+W
Sbjct:  317 KLPKNLQEV-AQTQIYRDILAAALSEPAFDGIWLWGFSDRHTW 358
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A6V2D7R8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D7R8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.620e-8
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   49 AQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            AQ +IY DIL A LSEP+FDGI  WGFTD+H+W
Sbjct:  271 AQRQIYRDILMAALSEPSFDGIWLWGFTDRHTW 303
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A1E7EV99_9STRA (Glycoside hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EV99_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   49 AQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            AQ++IY DI+ A L+EPAFDGI  WGFTD+H+W
Sbjct:  366 AQKQIYHDIIVAALTEPAFDGIWLWGFTDRHTW 398
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A448YW90_9STRA (GH10 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW90_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   49 AQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            AQ +IY DI+ A L+EPAFDG+  WGFTD+H+W
Sbjct:  404 AQRQIYHDIIAAALTEPAFDGLWLWGFTDRHTW 436
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: K0SY78_THAOC (GH10 domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SY78_THAOC)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   46 KAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            +AQ  IY DIL A LSEP+FDG+  WGFTD+H+W
Sbjct:  338 RAQTCIYRDILTAALSEPSFDGVWLWGFTDRHTW 371
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BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Match: A0A8J3QCI4_9ACTN (Beta-xylanase n=1 Tax=Rhizocola hellebori TaxID=1392758 RepID=A0A8J3QCI4_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 5.470e-6
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   22 LPAHADGVKAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW 147
            LPA+AD +  Q ++Y   + ACL+ P    IT WGFTD HSW
Sbjct:  276 LPANADRLTRQADVYGWAVSACLAVPRCRSITTWGFTDAHSW 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59425.13577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JAF9_9PHAE6.820e-1166.67GH10 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEC3_9STRA8.130e-1067.65Endo-1,4-beta-xylanase, family GH10 n=1 Tax=Tribon... [more]
B7FTY0_PHATC4.060e-958.14Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1D1E2_CYCTE1.110e-863.64Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2UN11_9STRA1.420e-860.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6V2D7R8_9STRA2.620e-869.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7EV99_9STRA3.630e-866.67Glycoside hydrolase n=1 Tax=Fragilariopsis cylindr... [more]
A0A448YW90_9STRA3.630e-863.64GH10 domain-containing protein n=1 Tax=Pseudo-nitz... [more]
K0SY78_THAOC1.270e-764.71GH10 domain-containing protein n=2 Tax=Thalassiosi... [more]
A0A8J3QCI4_9ACTN5.470e-650.00Beta-xylanase n=1 Tax=Rhizocola hellebori TaxID=13... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59425contigH-paniculata_contig59425:251..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LGR5
KEGG koko:K01181
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Glycosyl hydrolase family 10
EggNOG OGs2RWXU@2759,COG3693@1
EC3.2.1.8
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930652.994299-CDS-H-paniculata_contig59425:250..4001622930652.994299-CDS-H-paniculata_contig59425:250..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59425 251..400 +
1691481390.6719368-CDS-H-paniculata_contig59425:250..4001691481390.6719368-CDS-H-paniculata_contig59425:250..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59425 251..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59425.13577.1prot_H-paniculata_contig59425.13577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59425 251..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59425.13577.1

>prot_H-paniculata_contig59425.13577.1 ID=prot_H-paniculata_contig59425.13577.1|Name=mRNA_H-paniculata_contig59425.13577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
IPIPWYQLPAHADGVKAQEEIYSDILGACLSEPAFDGITFWGFTDKHSW*
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mRNA from alignment at H-paniculata_contig59425:251..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59425.13577.1 ID=mRNA_H-paniculata_contig59425.13577.1|Name=mRNA_H-paniculata_contig59425.13577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig59425:251..400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCCCATTCCTTGGTACCAGCTCCCCGCGCACGCAGACGGCGTGAAGGC
TCAGGAGGAAATCTACTCGGACATTTTGGGGGCTTGTCTATCGGAACCAG
CGTTTGATGGCATCACCTTTTGGGGTTTCACCGACAAGCACAGCTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig59425:251..400+

>mRNA_H-paniculata_contig59425.13577.1 ID=mRNA_H-paniculata_contig59425.13577.1|Name=mRNA_H-paniculata_contig59425.13577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig59425:251..400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCCCATTCCTTGGTACCAGCTCCCCGCGCACGCAGACGGCGTGAAGGC
TCAGGAGGAAATCTACTCGGACATTTTGGGGGCTTGTCTATCGGAACCAG
CGTTTGATGGCATCACCTTTTGGGGTTTCACCGACAAGCACAGCTGGTGA
ATTCCCATTCCTTGGTACCAGCTCCCCGCGCACGCAGACGGCGTGAAGGC
TCAGGAGGAAATCTACTCGGACATTTTGGGGGCTTGTCTATCGGAACCAG
CGTTTGATGGCATCACCTTTTGGGGTTTCACCGACAAGCACAGCTGGTGA
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