mRNA_H-paniculata_contig59343.13567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59343.13567.1
Unique NamemRNA_H-paniculata_contig59343.13567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 67.4 bits (163), Expect = 3.860e-12
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
            ++  K N++++F M D G ++ +LG+ VRRDR  G I I Q +Y+R VL+R+G DECR + TP++
Sbjct:   71 LEREKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPME 135          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
            +D  K  +S  F MKD+G+ SR+LGI+++RDR  G + +SQ SY+ +V+KR+   E + V TP+
Sbjct: 1050 IDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPI 1113          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-11
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
            +   K  ++QRF+M D+G +  VLG+E++RDR  GT+TISQ +Y + +L+R+G  EC+   TP
Sbjct:  669 ISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.510e-11
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
            +   K  + QRF+M D+G +  VLG+E++RDR  GT+TISQ +Y + +L+R+G  EC+   TP
Sbjct: 1026 ISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTP 1088          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A1J3G094_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G094_NOCCA)

HSP 1 Score: 63.2 bits (152), Expect = 2.030e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
            +   K ++S +F MKD+G  SR+LG+++ RDR  GT+ +SQ SYI +VLK +G  E +   TP
Sbjct:   22 IRSVKDSLSSKFEMKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTP 84          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.070e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
            + E K  +S  F MKDLG+  ++LG+E+RRDR  G +T+SQ  YI +VLKR+    C+ + TP+
Sbjct:  977 IRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPL 1040          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: UPI000EAB33BA (trypsin-1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB33BA)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
            +D+ K ++ Q F M D+G +  +LGI ++RDR  G IT+SQ  YI E++K++   E +GV TP++
Sbjct:   18 LDKVKLSLKQEFEMTDMGPVKNILGINIKRDRHTGAITLSQEKYIEELIKKFNMQEAKGVSTPIE 82          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 66.6 bits (161), Expect = 2.830e-11
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   22 VSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
            + ++  +KDLG    +LG+EV+RD+  GTI+ISQ  YI EVLKRYG + C+ V TP++
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIE 1104          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6S7JH29_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JH29_PARCT)

HSP 1 Score: 63.5 bits (153), Expect = 4.250e-11
Identity = 27/65 (41.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
            ++E K  +  +F+++DLG +S +LG+ ++RDR + T+TISQ  Y+  VLKR+  +EC+ V TP++
Sbjct:   76 LEEEKVAIGTKFKVEDLGEVSHMLGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLE 140          
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A438GE57_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GE57_VITVI)

HSP 1 Score: 65.9 bits (159), Expect = 5.240e-11
Identity = 26/64 (40.62%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
            ++  K  +S++F MKDLG+  ++LG+ + RD+PNGT+ +SQ  Y+++VL R+  +E + V TP+
Sbjct:  347 INNLKKQLSKQFAMKDLGAAKQILGMRIIRDKPNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPL 410          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5XDS1_9CNID3.860e-1244.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3F7G4_NOCCA1.110e-1143.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KL37_9PHAE1.500e-1144.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE1.510e-1144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1J3G094_NOCCA2.030e-1144.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1MW82_ARTAN2.070e-1145.31Retrovirus-related Pol polyprotein from transposon... [more]
UPI000EAB33BA2.620e-1141.54trypsin-1-like n=1 Tax=Ceratina calcarata TaxID=15... [more]
A0A293MM55_ORNER2.830e-1150.00Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6S7JH29_PARCT4.250e-1141.54Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438GE57_VITVI5.240e-1140.63Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59343contigH-paniculata_contig59343:531..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.9
Seed ortholog evalue9.7e-10
Seed eggNOG ortholog82508.K1VA87
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VGMM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.5949786-CDS-H-paniculata_contig59343:530..7251622930651.5949786-CDS-H-paniculata_contig59343:530..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59343 531..725 +
1691481390.0114334-CDS-H-paniculata_contig59343:530..7251691481390.0114334-CDS-H-paniculata_contig59343:530..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59343 531..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59343.13567.1prot_H-paniculata_contig59343.13567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59343 531..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59343.13567.1

>prot_H-paniculata_contig59343.13567.1 ID=prot_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLK
RYGFDECRGVPTPVD
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mRNA from alignment at H-paniculata_contig59343:531..725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59343.13567.1 ID=mRNA_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig59343:531..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGAGTTCAAGCATAACGTAAGTCAGCGTTTTAGGATGAAAGACTT GGGCTCTCTCTCGCGCGTGTTGGGGATAGAAGTGCGACGTGACCGCCCTA ATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAG AGATACGGTTTTGACGAGTGTCGGGGAGTACCCACCCCTGTAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig59343:531..725+

>mRNA_H-paniculata_contig59343.13567.1 ID=mRNA_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig59343:531..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGAGTTCAAGCATAACGTAAGTCAGCGTTTTAGGATGAAAGACTT
GGGCTCTCTCTCGCGCGTGTTGGGGATAGAAGTGCGACGTGACCGCCCTA
ATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAG
AGATACGGTTTTGACGAGTGTCGGGGAGTACCCACCCCTGTAGATGTAGA
CGAGTTCAAGCATAACGTAAGTCAGCGTTTTAGGATGAAAGACTTGGGCT
CTCTCTCGCGCGTGTTGGGGATAGAAGTGCGACGTGACCGCCCTAATGGT
ACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAGAGATA
CGGTTTTGACGAGTGTCGGGGAGTACCCACCCCTGTAGAT
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