prot_H-paniculata_contig5897.13518.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5897.13518.1
Unique Nameprot_H-paniculata_contig5897.13518.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length248
Homology
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BLAST of mRNA_H-paniculata_contig5897.13518.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.250e-39
Identity = 85/174 (48.85%), Postives = 118/174 (67.82%), Query Frame = 0 
Query:   34 RVTINTVVQGVATGVIDVGEHTPIIAPIFVALRIAKKVVDGAQRNSDDLQELHMLCMVLTAQVIERCNAKGSLGIDVTPLAKCVRKLEEVAARYSGRGLLSRMANFRRDGDDIQRLRNRIRDLVPIIGLAATAQVSDQLKNVQNMLEEAF-RER-QLVAESSGSPSGGSWLTAR 205
            R+ I+TVV+ VATG+I++G  TP++AP+ VAL  AK +VDGA RN ++L EL   C ++T QVI++  A  +  IDV+PL  CV KL+EVA RY  +G L+R+A FRRDGDDIQRLR RI  +VPI+GLA    + D+L++V+ +L     R R +L     G P+G +W   R
Sbjct:   94 RLGISTVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLEDVRQILARLQPRPRPKLAPVPPGLPAGEAWHAVR 267
[Close]
BLAST of mRNA_H-paniculata_contig5897.13518.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 8.640e-35
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 0 
Query:   33 LRVTINTVVQGVATGVIDVGEHTPIIAPIFVALRIAKKVVDGAQRNSDDLQELHMLCMVLTAQVIERCNAKGSLGIDVTPLAKCVRKLEEVAARYSGRGLLSRMANFRRDGDDIQRLRNRIRDLVPIIGLAATAQVSDQLKNVQNMLE 180
            +R T  TVVQ  A G I++G   P++AP+  AL  AK VVD A RN ++L+ELH  C ++T QVI++  A  +  IDV PL +CV KL+EVA RY  RG L+R+A FRRDG+DIQRLR RI D+VPI+GL+      ++L  +   L+
Sbjct:   15 VRFTALTVVQSFAEGAIEIGASAPVVAPLCTALLKAKGVVDAASRNKEELEELHERCEMITIQVIDKAKASKTSTIDVKPLQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNGEKLDQILARLQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5897.13518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE50_9PHAE1.250e-3948.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI2_9PHAE8.640e-3549.32NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..185
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..244
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 245..247
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5897contigH-paniculata_contig5897:3903..5951 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5897.13518.1mRNA_H-paniculata_contig5897.13518.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5897 2573..12362 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5897.13518.1 ID=prot_H-paniculata_contig5897.13518.1|Name=mRNA_H-paniculata_contig5897.13518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MRRLSAGKRTNDSSQEASEGLVNDTTQGASEGLRVTINTVVQGVATGVID
VGEHTPIIAPIFVALRIAKKVVDGAQRNSDDLQELHMLCMVLTAQVIERC
NAKGSLGIDVTPLAKCVRKLEEVAARYSGRGLLSRMANFRRDGDDIQRLR
NRIRDLVPIIGLAATAQVSDQLKNVQNMLEEAFRERQLVAESSGSPSGGS
WLTARSPWQWIAPGAKSGLVHNRARTLKIVVTCSGLLVIVTVLARKR*
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