mRNA_H-paniculata_contig5887.13509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5887.13509.1
Unique NamemRNA_H-paniculata_contig5887.13509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5887.13509.1 vs. uniprot
Match: A0A6H5JK35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK35_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.590e-31
Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 3 
Query:  336 ELSEDNISLSADISAVRVHQLAVTLRPLPVGAGGAAGAGSRPKMSASRWEVRKAMLSLCSTQPVMFEIDVTDKSASIRISFSVRAAAEELARKLSGVTVKIKGLKLHSFVR-VSECA 683
            E  ++ I LS D +AV++HQLA+TLRPL  G     G+G RP ++ASRWEVRKA++SLC +QP MFEI+ TDKSASIR++FS  A A+ L+R L GV+VKIKG+KLH+FVR VSE A
Sbjct:   41 EWDKERIVLSNDFTAVKLHQLAITLRPLTTG-----GSGGRPMLTASRWEVRKAIMSLCRSQPTMFEIEATDKSASIRVAFSAAADADALSRSLRGVSVKIKGVKLHAFVREVSESA 152
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BLAST of mRNA_H-paniculata_contig5887.13509.1 vs. uniprot
Match: D8LP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP18_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.550e-30
Identity = 71/114 (62.28%), Postives = 90/114 (78.95%), Query Frame = 3 
Query:  345 EDNISLSADISAVRVHQLAVTLRPLPVGAGGAAGAGSRPKMSASRWEVRKAMLSLCSTQPVMFEIDVTDKSASIRISFSVRAAAEELARKLSGVTVKIKGLKLHSFVR-VSECA 683
            ++ I LS D +AV++HQLA+TLRPL  G     G+G RP ++ASRWEVRKA++SLC +QP MFEI+ TDKSASIR++FS  A A+ L+R L GVTVKIKG+KLH+FVR VSE A
Sbjct:   44 KERIVLSDDFTAVKLHQLAITLRPLTTG-----GSGGRPMLTASRWEVRKAIMSLCRSQPTMFEIEATDKSASIRVAFSAAADADALSRSLRGVTVKIKGVKLHAFVREVSESA 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5887.13509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK35_9PHAE5.590e-3160.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP18_ECTSI1.550e-3062.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5887contigH-paniculata_contig5887:1242..3527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1215
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5887.13509.1prot_H-paniculata_contig5887.13509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5887 1687..3429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.9492393-UTR-H-paniculata_contig5887:1241..16861622930642.9492393-UTR-H-paniculata_contig5887:1241..1686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5887 1242..1686 -
1691481385.9852252-UTR-H-paniculata_contig5887:1241..16861691481385.9852252-UTR-H-paniculata_contig5887:1241..1686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5887 1242..1686 -
1622930643.0196068-UTR-H-paniculata_contig5887:3429..35271622930643.0196068-UTR-H-paniculata_contig5887:3429..3527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5887 3430..3527 -
1691481386.0157628-UTR-H-paniculata_contig5887:3429..35271691481386.0157628-UTR-H-paniculata_contig5887:3429..3527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5887 3430..3527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.9694808-CDS-H-paniculata_contig5887:1686..19201622930642.9694808-CDS-H-paniculata_contig5887:1686..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5887 1687..1920 -
1691481385.9960473-CDS-H-paniculata_contig5887:1686..19201691481385.9960473-CDS-H-paniculata_contig5887:1686..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5887 1687..1920 -
1622930643.0030165-CDS-H-paniculata_contig5887:2991..34291622930643.0030165-CDS-H-paniculata_contig5887:2991..3429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5887 2992..3429 -
1691481386.0061405-CDS-H-paniculata_contig5887:2991..34291691481386.0061405-CDS-H-paniculata_contig5887:2991..3429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5887 2992..3429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5887.13509.1

>prot_H-paniculata_contig5887.13509.1 ID=prot_H-paniculata_contig5887.13509.1|Name=mRNA_H-paniculata_contig5887.13509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MAHMNLAFKRALADVSKDTAARKSSNSTTNTISATVPPAPDSAAAATPDD
VRQQKRLRRSGCTASSSSVSQPPAILSDIELSEDNISLSADISAVRVHQL
AVTLRPLPVGAGGAAGAGSRPKMSASRWEVRKAMLSLCSTQPVMFEIDVT
DKSASIRISFSVRAAAEELARKLSGVTVKIKGLKLHSFVRVSECARYVID
LSTLFVHCCAQMTLIWPTDLLYC*
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mRNA from alignment at H-paniculata_contig5887:1242..3527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5887.13509.1 ID=mRNA_H-paniculata_contig5887.13509.1|Name=mRNA_H-paniculata_contig5887.13509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig5887:1242..3527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTTGACTCGAAGGCAGGAGGATTTCCCTACCGTAATAGTGGTCGGTC
TACTTGATACACCCTCAAAATTCTGTAGATTTTTGCTCTGCATGTCTAAT
GGCTCACATGAACCTAGCGTTCAAGAGAGCGTTGGCGGACGTCAGCAAGG
ACACGGCAGCCCGAAAAAGCAGCAACAGCACGACAAATACCATTTCTGCT
ACTGTTCCCCCTGCTCCTGATTCTGCTGCTGCTGCTACTCCTGATGATGT
GAGACAGCAAAAACGACTTCGACGCAGCGGCTGTACCGCTTCTTCTTCTT
CTGTTTCCCAACCACCGGCGATCCTCAGCGATATCGAGCTATCCGAGGAT
AACATCTCTCTGTCTGCGGATATCTCGGCGGTCAGAGTTCACCAGCTGGC
CGTGACGCTGAGGCCTTTGCCTGTTGGCGCCGGGGGTGCGGCAGGGGCTG
GGTCGCGTCCAAAGATGAGCGCGAGTCGGTGGGAGGTGCGCAAGGCCATG
CTATCGCTTTGCTCCACACAGCCCGTCATGTTTGAGGTGAGTCGTCTGAA
TGGAGAAGATATAACCGTTGCTGTCTGTCTGTCTTGTCGGCGCGTGATGT
GTTTCTGTTTCTGTTGTTGGCGTTCAAAAGTGCCTGCTTATGGCTGTTAC
AACTTGTCTACAGCAGTGTAAATTCACGGTACTTGAATCCATTGACACGA
CAATTTGAACATCCTGCCCCGTGCTGAGATATTCTGATACTCTGTCTACT
GTGCTGTCTTGTGCTGTTCTGTACTGAACTGTCGTGTACTAATGCACTAT
TTGGTACTGTACAAACACAAAGCTTGCTGTGCCGGTCGCGGCACGCACAA
GTTCGCCAAAGAACGCACAATAAGACAAGACAATCCATGGTTGTGCCAAC
CAGCTGCAACTTTAGATCCCCCAGGTCCACATATCCGGCGGCGTCCCCGT
TGCACTTCCTCGTGCCTAGGTTTGTCGCCATAAGGCTTACCCAGAGTTGT
TCTCGTCACTCGAGCATTTCATAAGTGATGAGCACTTACACCATAGATCA
TCAACATTTCTGAACGCCCGCAATTCTTCCCCCCACACATAAGCTTCTCT
CCCCCACCTCCACTCATTGCAAAATCGAAGGCGATAGCGATATCAGGAGA
TAGAAACTGGTCTGAGTAAGCGAGGGCTGAGATAATGTGAAAGGTAAAAA
CTGGTTTAATCTACATTTGGCTACACAAGAAAGCGCGGTTAGTCAACGGA
GATTGCTCTGATAGGAACAAAGCCCCGTCCTCTCGAACACGCGTTGCCGA
ATCTGACGTCCTCTCGAACACGCGTTGCCGAATCTGACAGCCGGGGGGGT
ATGCAAAACATGGGACACCCCCCCCCCTAACTGCAAGCGATGCGGCGTCC
TTCATATTTTGGTTTGCTCTTGTTCTGACTTTGAAACCCCAATGGCTTTC
CCTTCTTGGTATGCAAAATATGAGACACCCCCCCCCCTAACTGCAAGCGA
ATCGGCGTCCTTCATATTTCGGTTTGCTCTTGTTCTGACTTTGAAACCCC
AATGGCTTTGCCTTCTTATCCTTCCCCTAAAAATGGAATGGATCATGAAA
TGCGCAGATCGACGTGACAGATAAGTCCGCTTCGATTCGCATATCGTTTT
CCGTGCGGGCGGCGGCCGAAGAGTTGGCTCGCAAGCTGAGCGGGGTGACG
GTGAAGATCAAGGGGCTCAAACTCCATTCCTTTGTCAGGGTAAGCGAATG
TGCCCGGTATGTAATTGACCTAAGCACCCTTTTTGTGCACTGCTGTGCAC
AGATGACGCTCATATGGCCTACTGACCTACTGTACTGTTGAAAAGCCAGG
GAAAAAAATATAGTTTTTTCTGACACAAGTGTGTCACAGGAACACGGACG
TATGGAGCCGCCATTGTTCAAACGGCCCTGTACGGACAGTAAGGAGAAAA
GCTGGCATGATTCCTTCCGCGCACCACGACTGCAGCGATTGACGCATACA
TACATGGCATGGTGTGCGGGTTCAGGCGGCTGCTTCTATTACTGTGCAGC
GGCGTCGCAGTGCAACCTCTCTGGTTTTCTTGGGATGTTGCTGTTACACG
TTGAGCAGTTAGTTTTGCGCATACCGCCGTCTCTATTTTTCTCTCTCTTC
ATCATACATGCGATCGAGAAATCTTACTTGCCGCCACGACGGTAACAGGT
TAGGAACGTAAAGCACGAACCACACGCTGAGTGACTGATCGACTGTGCAG
CAATGAGTGCCTATTAGACAATCTCTACACAACCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5887:1242..3527-

>mRNA_H-paniculata_contig5887.13509.1 ID=mRNA_H-paniculata_contig5887.13509.1|Name=mRNA_H-paniculata_contig5887.13509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig5887:1242..3527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCACATGAACCTAGCGTTCAAGAGAGCGTTGGCGGACGTCAGCAA
GGACACGGCAGCCCGAAAAAGCAGCAACAGCACGACAAATACCATTTCTG
CTACTGTTCCCCCTGCTCCTGATTCTGCTGCTGCTGCTACTCCTGATGAT
GTGAGACAGCAAAAACGACTTCGACGCAGCGGCTGTACCGCTTCTTCTTC
TTCTGTTTCCCAACCACCGGCGATCCTCAGCGATATCGAGCTATCCGAGG
ATAACATCTCTCTGTCTGCGGATATCTCGGCGGTCAGAGTTCACCAGCTG
GCCGTGACGCTGAGGCCTTTGCCTGTTGGCGCCGGGGGTGCGGCAGGGGC
TGGGTCGCGTCCAAAGATGAGCGCGAGTCGGTGGGAGGTGCGCAAGGCCA
TGCTATCGCTTTGCTCCACACAGCCCGTCATGTTTGAGATGGCTCACATG
AACCTAGCGTTCAAGAGAGCGTTGGCGGACGTCAGCAAGGACACGGCAGC
CCGAAAAAGCAGCAACAGCACGACAAATACCATTTCTGCTACTGTTCCCC
CTGCTCCTGATTCTGCTGCTGCTGCTACTCCTGATGATGTGAGACAGCAA
AAACGACTTCGACGCAGCGGCTGTACCGCTTCTTCTTCTTCTGTTTCCCA
ACCACCGGCGATCCTCAGCGATATCGAGCTATCCGAGGATAACATCTCTC
TGTCTGCGGATATCTCGGCGGTCAGAGTTCACCAGCTGGCCGTGACGCTG
AGGCCTTTGCCTGTTGGCGCCGGGGGTGCGGCAGGGGCTGGGTCGCGTCC
AAAGATGAGCGCGAGTCGGTGGGAGGTGCGCAAGGCCATGCTATCGCTTT
GCTCCACACAGCCCGTCATGTTTGAGATCGACGTGACAGATAAGTCCGCT
TCGATTCGCATATCGTTTTCCGTGCGGGCGGCGGCCGAAGAGTTGGCTCG
CAAGCTGAGCGGGGTGACGGTGAAGATCAAGGGGCTCAAACTCCATTCCT
TTGTCAGGGTAAGCGAATGTGCCCGGTATGTAATTGACCTAAGCACCCTT
TTTGTGCACTGCTGTGCACAGATGACGCTCATATGGCCTACTGACCTACT
GTACTGTTGAATCGACGTGACAGATAAGTCCGCTTCGATTCGCATATCGT
TTTCCGTGCGGGCGGCGGCCGAAGAGTTGGCTCGCAAGCTGAGCGGGGTG
ACGGTGAAGATCAAGGGGCTCAAACTCCATTCCTTTGTCAGGGTAAGCGA
ATGTGCCCGGTATGTAATTGACCTAAGCACCCTTTTTGTGCACTGCTGTG
CACAGATGACGCTCATATGGCCTACTGACCTACTGTACTGTTGA
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