mRNA_H-paniculata_contig5871.13484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5871.13484.1
Unique NamemRNA_H-paniculata_contig5871.13484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5871.13484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5871contigH-paniculata_contig5871:6884..8132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size154
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5871.13484.1prot_H-paniculata_contig5871.13484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5871 6884..8116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.0184278-CDS-H-paniculata_contig5871:6883..69251622930640.0184278-CDS-H-paniculata_contig5871:6883..6925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 6884..6925 -
1691481384.9493086-CDS-H-paniculata_contig5871:6883..69251691481384.9493086-CDS-H-paniculata_contig5871:6883..6925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 6884..6925 -
1622930640.0367446-CDS-H-paniculata_contig5871:7387..74341622930640.0367446-CDS-H-paniculata_contig5871:7387..7434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 7388..7434 -
1691481384.958742-CDS-H-paniculata_contig5871:7387..74341691481384.958742-CDS-H-paniculata_contig5871:7387..7434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 7388..7434 -
1622930640.0557768-CDS-H-paniculata_contig5871:8067..81161622930640.0557768-CDS-H-paniculata_contig5871:8067..8116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 8068..8116 -
1691481384.973334-CDS-H-paniculata_contig5871:8067..81161691481384.973334-CDS-H-paniculata_contig5871:8067..8116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 8068..8116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.0731173-UTR-H-paniculata_contig5871:8116..81321622930640.0731173-UTR-H-paniculata_contig5871:8116..8132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5871 8117..8132 -
1691481384.9837127-UTR-H-paniculata_contig5871:8116..81321691481384.9837127-UTR-H-paniculata_contig5871:8116..8132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5871 8117..8132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5871.13484.1

>prot_H-paniculata_contig5871.13484.1 ID=prot_H-paniculata_contig5871.13484.1|Name=mRNA_H-paniculata_contig5871.13484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MGHHSSGQAHDTNAVNGCTEAAAPYAKDSVQEKRHCELLVVGLMNK
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mRNA from alignment at H-paniculata_contig5871:6884..8132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5871.13484.1 ID=mRNA_H-paniculata_contig5871.13484.1|Name=mRNA_H-paniculata_contig5871.13484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1249bp|location=Sequence derived from alignment at H-paniculata_contig5871:6884..8132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGATGTAACGGCTATGGGGCACCACTCCTCCGGCCAAGCACATGATA
CTAATGCTGTAAACGGTGAGTATTGGCGACCGTGAGCATTATTGTGATAT
TGCTGAAAACAGAGCATAATATAAAATGAGGAGTAAACTTGATCGGATAC
CACTCTACTACTGAGCTTAGCCGTTACTGTGATTGTACAAAATGTCACGC
TCAAAACTCTCGTGCGTATCCAGGTGTACTTGTTGCTCAGAGTCTATGCG
GTGCCAACGCAGGAGAGGCATCGATTGAGGTTCCGCGGTTAGCGCAACTC
TATAAAAATGCCGCCACACCTAATTGTTTGCTTTGAAGAAGCTGGCCGCG
TTTGACTGTCAGCAAAGGCTGAACGGTGTCTCCGTGTGCTCTGTCCGAAT
GGCTCATATAGTCCCCGCATTTTGAACGATTGCACTGCCGGGGCGTGAAC
GTCTGTCTCCCCAGAATTGGTAGGTGGCTTTTCCTGTCACGTACGCGGTA
GTTGTGGTTATGCGATTCCTTCGGCAACTTATCCGTTCTGAGTAAAAACT
TGTTTACACGAAGAGGACCTGGCTTCAAACTAGGTAGAATGACTGCGTGA
TCATATAAAAAAATCAAGTAGATATTATCTAGATTCATTCAGGTCGAGCT
GTATTTTTCTCACGAGCCGTTCCGTTTCACAATGTTTTGTCTCGTCAGGT
TGTACAGAGGCCGCGGCGCCTTACGCGAAGGATTCCGTTCAAGAGGTAAG
CTGTTCTTTGAGTTGAGTAGTGTGCTTGAATCCCACTCTAGATAGGCTCT
TCCACGTGGTTCACCGTTGAAAAAACGAGAAGCACACAAACCATCTTATA
CAGCAAATTACACTAAATGTTGTCTTGGTACACCTCGTATGCGAGTCTAA
CCGTATGGTTACCATGGTCCTACTGTAGTATTGGGCCTTTTCTTATGCCA
TTTTTTGGTAGATTGCAGGACGGAGCTCTACATCACCCCGTTTTACAATA
TTCATGAATCACAGGAAGTGCAACGGTTTCAAAAAAAGGCAGCCCTGCAG
TGCCGATGATATCTACATGACACGACGTCCTTCCACGAACAACCATCGCC
TGATGAGCTCATGTATGCCCCCCCCCCCGCCCGCCCGCCCGCCCGCCCCC
GCCAAAATGGGTCCCGTTTCATCCTGCCGGCATACGCTATGCCACTGCAA
ATGGAAGAAACGACACTGTGAGTTGTTGGTGGTTGGGCTTATGAACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5871:6884..8132-

>mRNA_H-paniculata_contig5871.13484.1 ID=mRNA_H-paniculata_contig5871.13484.1|Name=mRNA_H-paniculata_contig5871.13484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig5871:6884..8132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCACCACTCCTCCGGCCAAGCACATGATACTAATGCTGTAAACGA
TGGGGCACCACTCCTCCGGCCAAGCACATGATACTAATGCTGTAAACGGT
TGTACAGAGGCCGCGGCGCCTTACGCGAAGGATTCCGTTCAAGAGGTTGT
ACAGAGGCCGCGGCGCCTTACGCGAAGGATTCCGTTCAAGAGAAACGACA
CTGTGAGTTGTTGGTGGTTGGGCTTATGAACAAGAAACGACACTGTGAGT
TGTTGGTGGTTGGGCTTATGAACAAG
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