mRNA_H-paniculata_contig58689.13476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 60.8 bits (146), Expect = 1.790e-7 Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 271 EIWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 504
++WI D+GA++HMTH S+++ N Q D HV L DG + + G G ++ Q D + + L V ++P L+ +L S+G
Sbjct: 286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B) HSP 1 Score: 57.4 bits (137), Expect = 3.100e-6 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 223 LSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGNEY 531
L + E N G++ I D+GA+ HM D + N + GHV +A+G+R+PI GVG L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 396 LKMVKESPRNHIAQGIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 488
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90) HSP 1 Score: 57.4 bits (137), Expect = 3.120e-6 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 223 LSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGNEY 531
L + E N G++ I D+GA+ HM D + N + GHV +A+G+R+PI GVG L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 395 LKLVKESPRNHIAQGIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 487
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME) HSP 1 Score: 56.2 bits (134), Expect = 4.910e-6 Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 1
Query: 217 EVLSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFG 522
EVL V ++N WI D+G HMTH+ DFL N+Q+ D V L D + ++G G + Q ++ M LT V ++P L +L+SL + G
Sbjct: 55 EVLMVSHRDIQNA-------WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C) HSP 1 Score: 56.6 bits (135), Expect = 5.410e-6 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 223 LSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGNEY 531
L + E N G++ I D+GA+ HM D + N + GHV +A+G+R+PI GVG L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 381 LKLVKEPPRNHIAQGIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFASNLLSV-KRSDNGGEY 473
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM) HSP 1 Score: 55.8 bits (133), Expect = 9.310e-6 Identity = 51/188 (27.13%), Postives = 88/188 (46.81%), Query Frame = 1
Query: 25 RRECPNVYCGRCGQRGHDLYACPEDACLAEAETEIELEEALKVDLGEDEFIAAYIASIFTTGKEEVLSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGNEYRCSREGLRI-NLKTGRVL 582
R E + G C + + + + ET+ E K D DEF+ Y+ ++ TT ++ + S N+ + I D+GA+ HM D + + ++ G V +A+G+R+PIEGVG L FD + + ++P + +LLS+ K D G + + + +LKTGRV+
Sbjct: 234 RVEAQQILMGECSYSAYMGESVESSGVMKKLETKGADERVTKEDW--DEFVK-YVYALATTRRQGAPAKASTS--NKPI------IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME) HSP 1 Score: 53.5 bits (127), Expect = 2.480e-5 Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 271 EIWICDNGATKHMTHDSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGNEYRCSREGLRI 558
+ WI D+ T HMTH+ DFL N+Q+ D G + L D ++G + Q +++ + LT V ++P L +L+SLG+ G + E +++
Sbjct: 54 DAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGTCSV--QITTHDKMIRI-LTNVRYVPKLKCNLISLGELDRSGCTIKSENEVMKV 147
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: UPI00142DEC76 (uncharacterized protein LOC103873924 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DEC76) HSP 1 Score: 54.7 bits (130), Expect = 2.490e-5 Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1
Query: 223 LSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGNEYRCS 540
L + S+ N G++ I D+GA+ HM D + N + GHV +A+G+R+PI GVG L F DS+ + +IP + +LLS+ + N+ +C+
Sbjct: 400 LKLVSKSPRNHIAQGIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKM-FNKDSKAL--------YIPEFTSNLLSVKRCT---NDLQCN 493
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3) HSP 1 Score: 53.5 bits (127), Expect = 5.670e-5 Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 1
Query: 223 LSVDSEGLENRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFFQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFAD 516
L + E N G++ I D+GA+ HM D + N + GHV +A+G+R+PI GVG L F DS+ + M P + +LLS+ + D
Sbjct: 400 LKLIKEPPRNHIAQGIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSVKRCTD 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58689.13476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58689.13476.1 >prot_H-paniculata_contig58689.13476.1 ID=prot_H-paniculata_contig58689.13476.1|Name=mRNA_H-paniculata_contig58689.13476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp ICRSKDHLRRECPNVYCGRCGQRGHDLYACPEDACLAEAETEIELEEALKback to top mRNA from alignment at H-paniculata_contig58689:214..798- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58689.13476.1 ID=mRNA_H-paniculata_contig58689.13476.1|Name=mRNA_H-paniculata_contig58689.13476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig58689:214..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58689:214..798- >mRNA_H-paniculata_contig58689.13476.1 ID=mRNA_H-paniculata_contig58689.13476.1|Name=mRNA_H-paniculata_contig58689.13476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig58689:214..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |