mRNA_H-paniculata_contig58688.13475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58688.13475.1
Unique NamemRNA_H-paniculata_contig58688.13475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58688.13475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58688contigH-paniculata_contig58688:439..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog106582.XP_004575946.1
Preferred nameZCCHC3
KEGG koko:K09250
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0005844,GO:0006417,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0035770,GO:0036464,GO:0042788,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112,GO:2000765,GO:2000767
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5082@1,KOG4400@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.7726889-CDS-H-paniculata_contig58688:438..5851622930638.7726889-CDS-H-paniculata_contig58688:438..585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58688 439..585 -
1691481384.3775702-CDS-H-paniculata_contig58688:438..5851691481384.3775702-CDS-H-paniculata_contig58688:438..585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58688 439..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58688.13475.1prot_H-paniculata_contig58688.13475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58688 439..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58688.13475.1

>prot_H-paniculata_contig58688.13475.1 ID=prot_H-paniculata_contig58688.13475.1|Name=mRNA_H-paniculata_contig58688.13475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
RCFICRSKDHVRRECPNVYCWRCGKRGHDLYACPQVADEDACLAEGET*
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mRNA from alignment at H-paniculata_contig58688:439..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58688.13475.1 ID=mRNA_H-paniculata_contig58688.13475.1|Name=mRNA_H-paniculata_contig58688.13475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig58688:439..585- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACGTTCGACGGGAATGCCCCAA
CGTGTACTGTTGGCGATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCC
CCCAGGTCGCCGATGAAGATGCTTGTTTGGCTGAAGGTGAAACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig58688:439..585-

>mRNA_H-paniculata_contig58688.13475.1 ID=mRNA_H-paniculata_contig58688.13475.1|Name=mRNA_H-paniculata_contig58688.13475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig58688:439..585- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACGTTCGACGGGAATGCCCCAA
CGTGTACTGTTGGCGATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCC
CCCAGGTCGCCGATGAAGATGCTTGTTTGGCTGAAGGTGAAACGTAGAGG
TGCTTCATCTGCCGCTCCAAGGATCACGTTCGACGGGAATGCCCCAACGT
GTACTGTTGGCGATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCCCCC
AGGTCGCCGATGAAGATGCTTGTTTGGCTGAAGGTGAAACGTAG
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