mRNA_H-paniculata_contig58682.13473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58682.13473.1
Unique NamemRNA_H-paniculata_contig58682.13473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-13
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    1 ETRVCFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEF--WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMNRG--EIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            ETRVCF C +PGHL+ NC  R  L  K   +  SS        SD ++    H  T  +  V   E    W+ DSGA+AHMT        +E     ++T+A+G+   I G G  ++    G  E+ +  +S V +VPGL TNL S++ +  + L V
Sbjct:  208 ETRVCFYCKKPGHLQRNC--RKLLEAKKEENNTSSSGTKPK-KSDSVKAKAVHSDTRGIAFVVNGENARSWIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDV 361          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.030e-12
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF C++ GH+K  CP       KG G  E      A+F++   R                    W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +    G+  +  +  V H+PGLD  L S+  +  +GL V
Sbjct:  122 CFNCDKFGHMKRECPD-----FKGPGKNEED----AVFAAGESRS-----------------SGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGK--RIRMLDVLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-11
Identity = 42/150 (28.00%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF C + GH+K +CP ++        +G+S+         DR  +                   W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G   V +   +     +  V ++PGLD  L S+  +  +G++V
Sbjct:  208 CFNCGQAGHMKRDCPVKV--------NGDSNDDSVFAIGEDRSAE-------------------WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGS--VRLTGIDAKSIRMVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 3.810e-11
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEF--WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKM-LVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF+CN+PGH+K +CP R        G  +      A+F+                    G E F  W+ DSGATAHMTP    + +YE   + + VT+A+G+ L + G G + L+ +++  I    +  V H+PGLD  L S+  +  +GL V
Sbjct:  223 CFKCNQPGHMKRDCPVR------NTGGDDD-----AVFAV-------------------GTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTI---KMVDVLHIPGLDRRLLSVGKLAERGLNV 342          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.630e-11
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGK-MLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF+CN+PGH+K +CP+R          G     + A+  ++RL                     W+ DSGATAHMTP    + +YE   + + VT+A+G+   + G G  +L+ +++  I    +  V H+ GLD  L S+  +  +GL V
Sbjct:  223 CFKCNQPGHMKRDCPER--------NAGGDDDAVFAV-GTERLNG-------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSVGKLAERGLNV 342          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.630e-11
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGK-MLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF+CN+PGH+K +CP+R          G     + A+  ++RL                     W+ DSGATAHMTP    + +YE   + + VT+A+G+   + G G  +L+ +++  I    +  V H+ GLD  L S+  +  +GL V
Sbjct:  223 CFKCNQPGHMKRDCPER--------NAGGDDDAVFAV-GTERLNG-------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRI---KMVDVLHISGLDRRLLSVGKLAERGLNV 342          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A1W7R602_AEDAL (Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R602_AEDAL)

HSP 1 Score: 68.2 bits (165), Expect = 1.630e-10
Identity = 50/159 (31.45%), Postives = 69/159 (43.40%), Query Frame = 1
Query:    1 ETRVCFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLV----PVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYG--KMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            ++RVCF C +PGHLK NC Q +   C  + +   S +     +       V  G  A +V    P D     W  DSGAT HMT +       E      V +A+GE   + G G  +  V    GE  +  L  V  VPGL + L S+  +  +G  V
Sbjct:  219 DSRVCFYCKQPGHLKRNCRQFL-KECNKVENSTQSKKEDKSKAKASQAQSVSDGPLAWMVGYGEPAD-----WYVDSGATRHMTGNRRFFSKLEEAKFASVILADGEKSEVRGVGEGRFHVIDGNGEAVEVMLHDVLFVPGLTSGLISVSALSKKGFGV 371          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.410e-10
Identity = 43/150 (28.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            C+ C++ GH+K +CP         + + E      A+F+  +                 G    W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +    G+  +  +  V H+PGLD  L S+  +  +G++V
Sbjct:  227 CYNCDQIGHMKRDCPS------SNVSNDEE-----AVFAVGK-----------------GRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGK--RIKMVEVLHIPGLDRRLLSVGKLAERGMSV 346          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.830e-10
Identity = 43/135 (31.85%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKM-LVWMNRGEIHKFSLSRVAHVPGLD 411
            CF+CN+PGH+K +CP+R          G     + A+  ++RL                     W+ DSGATAHMTP    + +YE   + + VT+A+G+ L + G G + L+ +++  I    +  V H+PGLD
Sbjct:  116 CFKCNQPGHMKRDCPER--------NAGGDDDAVFAV-GTERLNG-------------------WLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQNRI---KMVDVLHIPGLD 219          
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.310e-10
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDIVEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 459
            CF C + GH+K +CP+         G  +      A+F+  + R                    W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +    G+  +  +  V ++PGLD  L S++ +  +G++V
Sbjct:  230 CFNCGQMGHMKRDCPE------PNAGKDDD-----AVFAVGKSRSAG-----------------WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGK--RIKMIDVLYIPGLDRQLLSVRRLAERGMSV 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58682.13473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q967L5_AEDAE1.220e-1334.39Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A3M6VPY8_9STRA6.030e-1232.00CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA1.210e-1128.00Integrase, catalytic core protein (Fragment) n=1 T... [more]
H3H5K9_PHYRM3.810e-1132.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3I090_9STRA9.630e-1130.46CCHC-type domain-containing protein n=8 Tax=Phytop... [more]
A0A6G0QKW0_9STRA9.630e-1130.46CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A1W7R602_AEDAL1.630e-1031.45Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes alb... [more]
A0A329SN38_9STRA2.410e-1028.67Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6A3GEB1_9STRA3.830e-1031.85CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A6A3X5U6_9STRA8.310e-1028.67CCHC-type domain-containing protein n=5 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58682contigH-paniculata_contig58682:256..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.5818756-CDS-H-paniculata_contig58682:255..4291622930638.5818756-CDS-H-paniculata_contig58682:255..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58682 256..429 +
1691481384.3290298-CDS-H-paniculata_contig58682:255..4291691481384.3290298-CDS-H-paniculata_contig58682:255..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58682 256..429 +
1622930638.594079-CDS-H-paniculata_contig58682:483..7681622930638.594079-CDS-H-paniculata_contig58682:483..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58682 484..768 +
1691481384.3493972-CDS-H-paniculata_contig58682:483..7681691481384.3493972-CDS-H-paniculata_contig58682:483..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58682 484..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58682.13473.1prot_H-paniculata_contig58682.13473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58682 256..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58682.13473.1

>prot_H-paniculata_contig58682.13473.1 ID=prot_H-paniculata_contig58682.13473.1|Name=mRNA_H-paniculata_contig58682.13473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
ETRVCFQCNEPGHLKMNCPQRICLICKGIGHGESSHRLSAMFSSDRLRDI
VEHGFTARLVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVA
NGETLPIEGYGKMLVWMNRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQG
LTV
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mRNA from alignment at H-paniculata_contig58682:256..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58682.13473.1 ID=mRNA_H-paniculata_contig58682.13473.1|Name=mRNA_H-paniculata_contig58682.13473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig58682:256..768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAA TTGTCCTCAGCGCATATGTCTGATCTGCAAAGGGATCGGTCATGGCGAGA GCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACCGGCTCAGGGACATT GTTGAACACGGTTTCACGGCCAGAGTGACAGGGCAGGGCGAGTTTGCTTC GGTAATCGAGCTTATTGAAGAGGACTAGCTAGTACCAGTAGATGGTTGTG AGGAATTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCT AACGAATTAATGTTTGATTACGAAACCTGCAGTAACTTGTTTGTGACGGT GGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTAT GGATGAATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCAT GTTCCGGGCCTGGACACGAATTTGTTTTCCCTACAGATTGTAGTGAACCA GGGACTTACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig58682:256..768+

>mRNA_H-paniculata_contig58682.13473.1 ID=mRNA_H-paniculata_contig58682.13473.1|Name=mRNA_H-paniculata_contig58682.13473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig58682:256..768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAA
TTGTCCTCAGCGCATATGTCTGATCTGCAAAGGGATCGGTCATGGCGAGA
GCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACCGGCTCAGGGACATT
GTTGAACACGGTTTCACGGCCAGAGAAACTCGTGTTTGTTTTCAATGTAA
TGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGTCTGATCT
GCAAAGGGATCGGTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTC
TCTTCGGACCGGCTCAGGGACATTGTTGAACACGGTTTCACGGCCAGACT
AGTACCAGTAGATGGTTGTGAGGAATTTTGGGTGGCCGACAGTGGGGCTA
CGGCCCACATGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCTGC
AGTAACTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGG
ATATGGTAAGATGTTGGTATGGATGAATCGGGGCGAGATACACAAATTCA
GCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACGAATTTGTTTTCC
CTACAGATTGTAGTGAACCAGGGACTTACTGTCCTAGTACCAGTAGATGG
TTGTGAGGAATTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTC
CGTCTAACGAATTAATGTTTGATTACGAAACCTGCAGTAACTTGTTTGTG
ACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTT
GGTATGGATGAATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAG
CGCATGTTCCGGGCCTGGACACGAATTTGTTTTCCCTACAGATTGTAGTG
AACCAGGGACTTACTGTC
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