mRNA_H-paniculata_contig5857.13460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5857.13460.1
Unique NamemRNA_H-paniculata_contig5857.13460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A6H5KSE2_9PHAE (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.040e-22
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQK 183
            G  GRIE V+V+FDP VV Y  L R FFD HDP+TGDRQGNDWGPQYQAA+FPH+  QK
Sbjct:  429 GYCGRIEAVRVAFDPAVVPYSDLVRCFFDFHDPSTGDRQGNDWGPQYQAAIFPHDESQK 487
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A3A0AAY0_9CHLR (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AAY0_9CHLR)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-17
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G  G  EVV+V+FDP V+SYE + R FF +HDPTT +RQGND GPQY++A+F H+ +QK  A
Sbjct:   50 GATGHAEVVQVTFDPQVISYEEILRVFFTIHDPTTLNRQGNDVGPQYRSAIFYHSPEQKATA 111
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A8D5U998_9CREN (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Stygiolobus sp. KN-1 TaxID=2824673 RepID=A0A8D5U998_9CREN)

HSP 1 Score: 79.3 bits (194), Expect = 5.230e-17
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G  G  EVV+++FDP V+SY+ L   FF++HDPTT +RQGND GPQY++ +  HN +Q+R+A
Sbjct:   47 GLTGHAEVVQITFDPTVISYKELLEIFFEIHDPTTPNRQGNDIGPQYRSIILYHNEEQRRIA 108
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A2M9TLE2_9BURK (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Advenella sp. S44 TaxID=1982755 RepID=A0A2M9TLE2_9BURK)

HSP 1 Score: 79.7 bits (195), Expect = 6.180e-17
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   16 GRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G IEV+++ FDPIV+SY+ L   FFD HDPTT DRQGND GPQY +A+F  + +QK  A
Sbjct:   79 GHIEVIRIEFDPIVISYQDLLEIFFDTHDPTTPDRQGNDVGPQYASAIFWQSDEQKETA 137
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: UPI0018ED9FBE (peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Chromobacterium sp. ASV5 TaxID=2795109 RepID=UPI0018ED9FBE)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G +G +EVV+V FDP V+SYE+L + FF +HDPTT DRQGND GPQY +A+F  N D +RLA
Sbjct:   47 GDSGHVEVVRVDFDPAVLSYETLLQAFFALHDPTTVDRQGNDVGPQYASAIFYLN-DAQRLA 107
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BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A7C5ZV81_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C5ZV81_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.630e-16
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G  G  EVV+++FDP ++SY+ + R FF +HDPTT +RQGND G QY++A+F HN +QKR A
Sbjct:   52 GETGHAEVVQITFDPKIISYDDILRVFFTVHDPTTLNRQGNDVGTQYRSAIFYHNPEQKRTA 113
[Close]
BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A518C287_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518C287_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   16 GRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G  EV+++++DP VVSYE L   FF  HDPTT DRQGND GPQY++A+F H+ +QK+ A
Sbjct:   53 GHAEVIQITYDPEVVSYEDLLEIFFQTHDPTTKDRQGNDVGPQYRSAVFYHSDEQKQTA 111
[Close]
BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A6H0ISA2_9GAMM (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Aquisalimonas sp. 2447 TaxID=2740807 RepID=A0A6H0ISA2_9GAMM)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-16
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    7 GCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G +G  EVV++ FDP VVSYE+L   FF +HDPT  +RQGND GPQY++A+ P + +Q+R+A
Sbjct:   51 GASGHAEVVRLRFDPAVVSYEALLDVFFSIHDPTQLNRQGNDVGPQYRSAIMPQDEEQERIA 112
[Close]
BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: UPI001BAB01E8 (peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BAB01E8)

HSP 1 Score: 77.4 bits (189), Expect = 3.120e-16
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   16 GRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G IEVVKV FDP V+SY  + R FF +HDPTT DRQG D GPQY++A+F  +A+Q+++A
Sbjct:   52 GHIEVVKVDFDPAVISYADILRVFFAIHDPTTRDRQGADAGPQYRSAIFCADAEQEKVA 110
[Close]
BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Match: A0A0D2N308_9CHLO (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N308_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 3.750e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   16 GRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQAALFPHNADQKRLA 192
            G IEVVK++FDP VVSY+ L   FF +HDPTT DRQGND GPQY +A+F  +A+Q+ +A
Sbjct:  142 GHIEVVKITFDPAVVSYKELLEVFFTIHDPTTPDRQGNDVGPQYASAIFYADAEQEAVA 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5857.13460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSE2_9PHAE5.040e-2271.19Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A3A0AAY0_9CHLR1.900e-1758.06Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A8D5U998_9CREN5.230e-1753.23Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A2M9TLE2_9BURK6.180e-1759.32Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
UPI0018ED9FBE1.380e-1661.29peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]
A0A7C5ZV81_9BACT1.630e-1654.84Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A518C287_9BACT2.930e-1657.63Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A6H0ISA2_9GAMM3.060e-1654.84Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
UPI001BAB01E83.120e-1659.32peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]
A0A0D2N308_9CHLO3.750e-1661.02Peptide-methionine (S)-S-oxide reductase n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5857contigH-paniculata_contig5857:12226..13305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.3
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog977880.RALTA_A2295
Preferred namemsrA
KEGG koko:K07304
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EggNOG OGs1K3ZU@119060,1MVUS@1224,2VR6F@28216,COG0225@1,COG0225@2
EC1.8.4.11
COG Functional cat.O
Best tax levelBurkholderiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930637.3089862-CDS-H-paniculata_contig5857:12225..122981622930637.3089862-CDS-H-paniculata_contig5857:12225..12298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5857 12226..12298 -
1691481383.7403584-CDS-H-paniculata_contig5857:12225..122981691481383.7403584-CDS-H-paniculata_contig5857:12225..12298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5857 12226..12298 -
1622930637.3235753-CDS-H-paniculata_contig5857:13186..133051622930637.3235753-CDS-H-paniculata_contig5857:13186..13305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5857 13187..13305 -
1691481383.7525406-CDS-H-paniculata_contig5857:13186..133051691481383.7525406-CDS-H-paniculata_contig5857:13186..13305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5857 13187..13305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5857.13460.1prot_H-paniculata_contig5857.13460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5857 12226..13305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5857.13460.1

>prot_H-paniculata_contig5857.13460.1 ID=prot_H-paniculata_contig5857.13460.1|Name=mRNA_H-paniculata_contig5857.13460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
DLGCAGRIEVVKVSFDPIVVSYESLARQFFDMHDPTTGDRQGNDWGPQYQ
AALFPHNADQKRLA
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mRNA from alignment at H-paniculata_contig5857:12226..13305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5857.13460.1 ID=mRNA_H-paniculata_contig5857.13460.1|Name=mRNA_H-paniculata_contig5857.13460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig5857:12226..13305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTTGGTTGTGCAGGACGGATAGAGGTGGTGAAAGTATCATTTGATCC
TATCGTCGTATCATACGAGTCGCTGGCTCGTCAGTTCTTCGACATGCACG
ACCCCACCACTGGCGACAGGTGCGCAAACTCGCGCGGACGATTTGCTACT
ATTTTGGATTGTAATGTAGCACTACCGGGTAGAGTATTACCGGGCGCGTA
CGCGCTCGTAGATCAAGGAGATCATCATAGTCCACCCCATTTCACGCTCT
ACTTAGCTATTGGGTCTAGGTGACCACGGGTAAAGAGTGACAAAACAGTG
TGCCTGCCTCCCCCGTTCATCAATAAGGGATTCCTTGAAACACCCCGCAC
CGAATGTCGCTGGGCCATGTGTCACGTACAGGTGTGAACATATGTGCCCC
TCCTTCAGTCATTTCCACGGACATGAGAATTTCGCACCTGCTCCCTGTCA
CTTCTCCTGGTGCACGGCTTGTTCTGACATAACCGCTCTCTACGGCTTCC
CCCAGTTACCGTTTGTTTGTGCTATCTCAGTGTGGGGCACTTCAGTGCAG
GCTTGCGCCGTTCCAAATGGATTCATTTTGGCGCTATTTTGATGTGATTT
TACGTATCAATAGAGCTGCTAACTAGTTGTCGGGTTGGCAGCTGTAAAGT
ACCCGGGGTGCCTGGACGACATGCTAGACGATAACGTGAAGAAGTGAGAG
GAGTTAGAGAGCTGTAGCATGAAGGTAACGTTCACGTGGTTCCCAGTGCC
CTGCCTCGCTGCTCTTTTATGCCGACGCTCCAGACGTAAAATTCCAACTC
TATGAAGTTGCCTCCAACAGTGAATTTTTGTGCGACACCCCCATCGACTA
ACTCTGAAAATATACCAAGACCACGCAAACCCCGATCGGCGCATAGCCAG
GAACATATTGGCGGATCAGCTTCGGAGATGATTTAAAGGACCATTTTCTG
TGCTGCCGCAGCCGAAACCTTATCCCTCTTGCACACCTCTACATGACCCT
TATGCAGGCAGGGGAACGACTGGGGGCCACAATATCAAGCAGCTTTGTTC
CCCCACAATGCGGACCAGAAACGGTTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5857:12226..13305-

>mRNA_H-paniculata_contig5857.13460.1 ID=mRNA_H-paniculata_contig5857.13460.1|Name=mRNA_H-paniculata_contig5857.13460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig5857:12226..13305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTTGGTTGTGCAGGACGGATAGAGGTGGTGAAAGTATCATTTGATCC
TATCGTCGTATCATACGAGTCGCTGGCTCGTCAGTTCTTCGACATGCACG
ACCCCACCACTGGCGACAGGACCTTGGTTGTGCAGGACGGATAGAGGTGG
TGAAAGTATCATTTGATCCTATCGTCGTATCATACGAGTCGCTGGCTCGT
CAGTTCTTCGACATGCACGACCCCACCACTGGCGACAGGCAGGGGAACGA
CTGGGGGCCACAATATCAAGCAGCTTTGTTCCCCCACAATGCGGACCAGA
AACGGTTGGCGGCAGGGGAACGACTGGGGGCCACAATATCAAGCAGCTTT
GTTCCCCCACAATGCGGACCAGAAACGGTTGGCG
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