mRNA_H-paniculata_contig58539.13457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58539.13457.1
Unique NamemRNA_H-paniculata_contig58539.13457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.590e-36
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    7 TISNRFASFGRG-ASGSTEGADEHVSEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            T  +RF+ FGRG A  ST+   +  SE+++L E+VAGE+E YKSLFI  DELDCREVL WW+R G+  FP LAPVAQQVFG+QAA +QVERDFS    LL  NRSR++TYWVE
Sbjct:  136 TRKSRFSLFGRGDARSSTDDMADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVE 248          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.350e-33
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 ATTISNRFASFGRG-ASGSTEGADEHVSEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            AT    RFAS  R    G TE   E  SE+K L + V+ E+ER+++L++T +ELD REVL WWR  GRK FPCLAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:  445 ATKARPRFASLARNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 559          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.190e-32
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1
Query:  106 VAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            V+ EIERY SL+IT +ELD RE+L WWR+ GRK FP LAPVAQQVFG+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:    8 VSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVE 86          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.310e-28
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:  118 IERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            I+R+++L++T +ELD REVL WWR  GRK FP LAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 161          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.440e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   94 LDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            ++E V+GEI RYK +F+ P +L   +VL +W + G++ FP L  VAQQ FGSQA+AAQ+ERDFS C      NRSR E YW+E
Sbjct:  466 VEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLE 548          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.980e-16
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   55 TEGADEHVSEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            T GA E        D  VAGEI+R ++L +   +L  R+VL +W++ GR AFP L  VAQQ FGSQA AAQ+ERDFS    L  +NR+R++ YWVE
Sbjct:  348 TAGAVEQSGSGDDGDLSVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVE 443          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.760e-15
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1
Query:  208 FPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            FP LAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 46          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.890e-13
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  169 EVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            EVL +W R G+ AFP L  VAQQ FG+QA+AA VERDFS C   +V NRSRV+ YWVE
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVE 446          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-11
Identity = 48/111 (43.24%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   16 NRFASFGRGA---SGSTEGADEHVSEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWV 339
            N F+ FGR     S S EG  + V EE      V+GEI               R+VL +W + G +  P L  VAQQ FGSQA+AAQ+ERDFS C      NRSR E YW+
Sbjct:  563 NDFSMFGRNEVAPSQSDEGDVDFVEEE------VSGEI--------------MRDVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWL 653          
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.050e-10
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   49 GSTEGADEHVSEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            G T+   E  SE+K L + V+ E+ER+++L++T                           A +V G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:  192 GDTKDVGEGDSEDKVLMQQVSQELERFQALYMT---------------------------AGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58539.13457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE1.590e-3662.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE1.350e-3360.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE1.190e-3273.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.310e-2869.33Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.440e-1853.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE1.980e-1650.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE5.760e-1577.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE1.890e-1363.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K0P1_9PHAE2.070e-1143.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM2_9PHAE9.050e-1040.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58539contigH-paniculata_contig58539:386..985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930637.0235264-CDS-H-paniculata_contig58539:385..5411622930637.0235264-CDS-H-paniculata_contig58539:385..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58539 386..541 +
1691481383.6161375-CDS-H-paniculata_contig58539:385..5411691481383.6161375-CDS-H-paniculata_contig58539:385..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58539 386..541 +
1622930637.039257-CDS-H-paniculata_contig58539:798..9841622930637.039257-CDS-H-paniculata_contig58539:798..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58539 799..984 +
1691481383.6258454-CDS-H-paniculata_contig58539:798..9841691481383.6258454-CDS-H-paniculata_contig58539:798..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58539 799..984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58539.13457.1prot_H-paniculata_contig58539.13457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58539 386..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58539.13457.1

>prot_H-paniculata_contig58539.13457.1 ID=prot_H-paniculata_contig58539.13457.1|Name=mRNA_H-paniculata_contig58539.13457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
ATTISNRFASFGRGASGSTEGADEHVSEEKQLDEIVAGEIERYKSLFITP
DELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNL
LVANRSRVETYWVE
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mRNA from alignment at H-paniculata_contig58539:386..985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58539.13457.1 ID=mRNA_H-paniculata_contig58539.13457.1|Name=mRNA_H-paniculata_contig58539.13457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig58539:386..985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGGGGCGCCAGCGG CAGTACTGAAGGCGCCGACGAGCATGTCAGTGAGGAGAAGCAGCTGGACG AGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATCACGCCC GACGAGGTATGTCAAATTGGAAATGACTTGCATGATTTTATTTGCTTGAC GCATAACCTTGTTGAGTACCACGTCGCAAGGAAAGGATAAGGATGAGTTG GCCCCGCATAATATTTGCATTTTTGTTGCGTGCTGGTGATACAAACGAAA TACGAAGTAGTTATTTTTGAAAACGGAATTGAAGCGGTTTTTAATAGAGT TAAACATACATCTTAAATATATCCAAACATCACCTCCGTCTGTATTTTGT TTAAATTGTGCAGCTCGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCC AAGGCCGGAAGGCGTTCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTT GGGAGCCAGGCGGCTGCCGCGCAGGTTGAGCGCGACTTCAGTTGTTGCCG TAACCTACTGGTGGCCAACAGGAGCCGCGTCGAAACCTACTGGGTAGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig58539:386..985+

>mRNA_H-paniculata_contig58539.13457.1 ID=mRNA_H-paniculata_contig58539.13457.1|Name=mRNA_H-paniculata_contig58539.13457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig58539:386..985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGGGGCGCCAGCGG
CAGTACTGAAGGCGCCGACGAGCATGTCAGTGAGGAGAAGCAGCTGGACG
AGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATCACGCCC
GACGAGGCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGGGGCGC
CAGCGGCAGTACTGAAGGCGCCGACGAGCATGTCAGTGAGGAGAAGCAGC
TGGACGAGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATC
ACGCCCGACGAGCTCGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCCA
AGGCCGGAAGGCGTTCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTTG
GGAGCCAGGCGGCTGCCGCGCAGGTTGAGCGCGACTTCAGTTGTTGCCGT
AACCTACTGGTGGCCAACAGGAGCCGCGTCGAAACCTACTGGGTAGAGCT
CGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCCAAGGCCGGAAGGCGT
TCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTTGGGAGCCAGGCGGCT
GCCGCGCAGGTTGAGCGCGACTTCAGTTGTTGCCGTAACCTACTGGTGGC
CAACAGGAGCCGCGTCGAAACCTACTGGGTAGAG
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