mRNA_H-paniculata_contig5814.13418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 111 bits (277), Expect = 2.790e-25 Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEFPGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
WK+ + E++ L N WT VE P+N+ +YK K EDG+V KYK R LV G RQ+ + Y E P S +++L AV +R + + A+L ID+ +++ P+ YQ+ V KL++++YGL QA RCW+ + T L LG + AD CVF
Sbjct: 148 WKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKAR-----LVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADVCVF 313
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A1Y1M2G6_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M2G6_PHOPY) HSP 1 Score: 108 bits (271), Expect = 2.190e-24 Identity = 60/174 (34.48%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEFPGA---VGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + E + LI N W VERP + I +M ++KRK + G + KYK R LV G+ Q K + YE++ P + +I+L+ +V + +I H++ AYL A +D+E +++IP+ + E V +L K++YGL Q+G W+ +I + LK +G ++SR DPC++
Sbjct: 859 WHEAIQEEYENLISNDTWNIVERPRDAKILRSMWIFKRKYDDCGRIMKYKAR-----LVALGNHQTKYVDYEKSFSPVIMRKTMRILLAISVRKNWEINHIDVNCAYLNARLDEETYMEIPDGFDENLNKKKYVCELKKSLYGLHQSGYLWNQEINEFLKKMGMQRSRMDPCLY 1027
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 108 bits (270), Expect = 2.940e-24 Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEFPGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
WK E E+ L N W V P +K S+ ++K K DG + +R+K RLV G QI+ + Y E P + +++LS +V KI + + A+L +++E+++D+P+E +E V KL KA+YGL QA RCW+ K L+ GF Q +AD CV+
Sbjct: 650 WKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRI-----QRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKFNNFLQEFGFRQCQADKCVY 815
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 108 bits (269), Expect = 4.190e-24 Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEFPGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
WK+ + E++ L N WT VE P+N+ + +Y K EDG+V KYK R LV G RQ+ + Y E P S +++L A +R + + A+L ID+ +++ P+ YQ+ V KL++++YGL QA RCW+ + T L LG + AD CVF
Sbjct: 213 WKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKAR-----LVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADACVF 378
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A4Y2KZY8_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KZY8_ARAVE) HSP 1 Score: 103 bits (257), Expect = 2.330e-23 Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEF--PGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + EMK L N W V P K + +K K GN+ RYK RLV G Q Y+E P T + + L+ A + + HV+ + A+L ++ E+++ PE Y E V KL+KA+YGL QA R W +KI + L GFEQS+ADPC+F
Sbjct: 122 WIESTKEEMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNI-----ERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLF 289
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A4Y2KUR8_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KUR8_ARAVE) HSP 1 Score: 104 bits (259), Expect = 5.860e-23 Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEF--PGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + + EMK L N W V P K + +K K GN+ RYK RLV G Q Y+E P T + + L+ A + + HV+ + A+L ++ E+++ PE Y E V KL+KA+YGL QA R W +KI + L GFEQS+ADPC+F
Sbjct: 10 WIKSTKEEMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNI-----ERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLF 177
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 104 bits (259), Expect = 8.940e-23 Identity = 63/173 (36.42%), Postives = 95/173 (54.91%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEY--QEFPGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
WK + E + L+ N W V P+ K I + ++K K DG+V R+K RLV G Q + I Y+E P S + +L+ A I D +I ++ + A+LQ +D+ IF+ PE Y QE P V KL++++YGL QA RCW+ I L + G+ +S ADPC++
Sbjct: 829 WKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSV-----ERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIY 996
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A4Y2RM53_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RM53_ARAVE) HSP 1 Score: 103 bits (257), Expect = 1.600e-22 Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEF--PGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + EMK L N W V P K + +K K GN+ RYK RLV G Q Y+E P T + + L+ A + + HV+ + A+L ++ E+++ PE Y E V KL+KA+YGL QA R W +KI + L GFEQS+ADPC+F
Sbjct: 440 WIESTKEEMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNI-----ERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLF 607
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A4Y2QC94_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QC94_ARAVE) HSP 1 Score: 103 bits (257), Expect = 1.600e-22 Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEF--PGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + EMK L N W V P K + +K K GN+ RYK RLV G Q Y+E P T + + L+ A + + HV+ + A+L ++ E+++ PE Y E V KL+KA+YGL QA R W +KI + L GFEQS+ADPC+F
Sbjct: 440 WIESTKEEMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNI-----ERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLF 607
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Match: A0A4Y2R9J3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R9J3_ARAVE) HSP 1 Score: 103 bits (257), Expect = 1.630e-22 Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 1 WKRLEEVEMKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLVVHGSRQIKAIYYEEASLPAPTAASTKIVLSTAVIND*KIRHVEFE*AYLQAPIDQEIFIDIPEEYQEF--PGAVGKLDKAMYGLVQAGRCWSMKITKDLKTLGFEQSRADPCVF 513
W + EMK L N W V P K + +K K GN+ RYK RLV G Q Y+E P T + + L+ A + + HV+ + A+L ++ E+++ PE Y E V KL+KA+YGL QA R W +KI + L GFEQS+ADPC+F
Sbjct: 768 WIESTKEEMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNI-----ERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLF 935 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5814.13418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5814.13418.1 >prot_H-paniculata_contig5814.13418.1 ID=prot_H-paniculata_contig5814.13418.1|Name=mRNA_H-paniculata_contig5814.13418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp MKGLIDNGVWTQVERPENKLIESAMMLYKRKLGEDGNVGKYKCRRYKCRLback to top mRNA from alignment at H-paniculata_contig5814:12722..13452- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5814.13418.1 ID=mRNA_H-paniculata_contig5814.13418.1|Name=mRNA_H-paniculata_contig5814.13418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at H-paniculata_contig5814:12722..13452- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5814:12722..13452- >mRNA_H-paniculata_contig5814.13418.1 ID=mRNA_H-paniculata_contig5814.13418.1|Name=mRNA_H-paniculata_contig5814.13418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig5814:12722..13452- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |