mRNA_H-paniculata_contig5812.13414.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5812.13414.1
Unique NamemRNA_H-paniculata_contig5812.13414.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.440e-17
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 2 
Query:  413 KVKDSKKGYIFMLESEQGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTIDN 742
            K +++ K  +      Q P  DCGGT+AP+CRLQ I MV AIA E +L+  QLD  T F  A + E V+V+M PGYE  +   + LV +  KSL  L QSP +W  TID+
Sbjct:  358 KPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDS 467
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BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.310e-12
Identity = 29/70 (41.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            L   G+K  +SDPC+Y+Y+ G++++I T+YVD++L+ G+D ++ ++  ++L +R  MTDMG+V  +LG+D
Sbjct:   27 LTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGRDQQLVDQKKKELTDRFEMTDMGEVKRILGID 96
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-11
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            LVEIGF +LKSDPC+Y+Y      I  TLYVD++LL G D      +  KL  R  MTD+G+ SLVLGM+
Sbjct:  475 LVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGME 544
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            +VEIGF +LKSDPC+Y+Y      I  TLYVD++LL G D      +  KL  R  MTD+G+ SLVLGM+
Sbjct:   89 IVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGME 158
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.550e-11
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            LVEIGF +LKSDPC+Y+Y      I  TLYVD++LL G D      +  KL  R  MTD+G+ SLVLGM+
Sbjct: 1318 LVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGME 1387
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.560e-11
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            LVEIGF +LKSDPC+Y+Y      I  TLYVD++LL G D      +  KL  R  MTD+G+ SLVLGM+
Sbjct: 1483 LVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGME 1552
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.580e-11
Identity = 30/72 (41.67%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  739 QHLVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            + L   G+K  +SDPC+Y+Y+ G++++I T+YVD++L++G D ++ ++  ++L +R  MTDMG+V  VLG+D
Sbjct:  144 ESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGID 215
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.350e-11
Identity = 29/72 (40.28%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:  739 QHLVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            + L   G+K  +SDPC+Y+Y+ G++++I T+YVD++L+ G D ++ ++  ++L +R  MTDMG+V  +LG+D
Sbjct:   25 ESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGID 96
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.190e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  745 LVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            LVEIGF +LKSDPC+Y+Y      I  TLYVD++LL G D      +  KL  R  MT++G+ SLVLGM+
Sbjct: 1099 LVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTNLGEASLVLGME 1168
[Close]
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.920e-11
Identity = 29/72 (40.28%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:  739 QHLVEIGFKSLKSDPCLYIYSEGDVVIISTLYVDNVLLLGKDLKIFERISQKLMNRLSMTDMGDVSLVLGMD 954
            + L   G+K  +SDPC+Y+Y+ G++++I T+YVD++L+ G D ++ ++  ++L +R  MTDMG+V  +LG+D
Sbjct:  154 ESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGID 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE5.440e-1745.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRT7_9PHAE5.310e-1241.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMG0_9PHAE1.210e-1152.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE1.550e-1151.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.550e-1152.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.560e-1152.86Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K066_9PHAE2.580e-1141.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE4.350e-1140.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYB5_9PHAE6.190e-1151.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG29_9PHAE6.920e-1140.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5812contigH-paniculata_contig5812:3783..4813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog36914.XP_001527393.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size1031
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5812.13414.1prot_H-paniculata_contig5812.13414.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5812 4228..4680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.1203957-UTR-H-paniculata_contig5812:3782..42271622930632.1203957-UTR-H-paniculata_contig5812:3782..4227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5812 3783..4227 +
1691481381.3042095-UTR-H-paniculata_contig5812:3782..42271691481381.3042095-UTR-H-paniculata_contig5812:3782..4227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5812 3783..4227 +
1622930632.1532927-UTR-H-paniculata_contig5812:4680..48131622930632.1532927-UTR-H-paniculata_contig5812:4680..4813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5812 4681..4813 +
1691481381.3274114-UTR-H-paniculata_contig5812:4680..48131691481381.3274114-UTR-H-paniculata_contig5812:4680..4813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5812 4681..4813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.1388943-CDS-H-paniculata_contig5812:4227..46801622930632.1388943-CDS-H-paniculata_contig5812:4227..4680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5812 4228..4680 +
1691481381.3168147-CDS-H-paniculata_contig5812:4227..46801691481381.3168147-CDS-H-paniculata_contig5812:4227..4680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5812 4228..4680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5812.13414.1

>prot_H-paniculata_contig5812.13414.1 ID=prot_H-paniculata_contig5812.13414.1|Name=mRNA_H-paniculata_contig5812.13414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MLESEQGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRN
AGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTIDNI
WWRSASKASSRTHVSISTRRATSSSFRPCMSTTFYCSEKTSRFSSGSAKS
*
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mRNA from alignment at H-paniculata_contig5812:3783..4813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5812.13414.1 ID=mRNA_H-paniculata_contig5812.13414.1|Name=mRNA_H-paniculata_contig5812.13414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1031bp|location=Sequence derived from alignment at H-paniculata_contig5812:3783..4813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGTCCGGGCGCTGGCGCGCACTTTTTCGTGGAGCGTAACGCCTATCGC
GATTCGGACTCAGCTCAATTCGCGGCGATCGCCACCGAGAGCACCCTCTT
TGACCTCGGACGGCTGGGACTCTACACCAAGGCGTCTCTGCCGAATATCG
CGCATCAGATATATGAACAGGATTCCGCCGTAAACTATGCCTGCGCCGCG
ATCACTGTTTAAAACCGTTCGGCGGGGGAGAAAGCGGAAATCATTTCGAA
CACCTTAACAGAGGCCATGGCTCTACCGGCTAGGACGCAGTGGAAGGCGG
CCTCAGACAAGGAAGCTGCAAACCTAAAAAGGAACAACACCTACGCCCTC
TTGCCGGCGACCCCCGTTCCCACCGGACACAAGATCATTGGCTCTCGATA
TGTCTACAAGATAAAGTCAAAGACTCGAAGAAGGGATACATTTTTATGCT
AGAATCGGAACAAGGGCCCTGCCATGACTGCGGCGGTACGTACGCTCCCC
TTTGTAGGCTTCAGAGAATCCACATGGTGCTGGCAATAGCGACCGAGTAC
AACCTGGAGTCCTGGCAGCTAGACTACAACACCGGGTTCCGAAACGCTGG
CGTCAGGGAGGAAGTCTACGTTAAGATGGTACCTGGATACGAGGAAGTCG
ACGAAAACGGAGTTCCGTTGGTAACGAGGAATCTGAAGAGCCTCTATGTC
CTTCGCCAGAGCCCATCGAATTGGTCGGGGACAATCGACAACATCTGGTG
GAGATCGGCTTCAAAAGCCTCAAGTCGGACCCATGTCTCTATATCTACTC
GGAGGGCGACGTCGTCATCATTTCGACCCTGTATGTCGACAACGTTCTAC
TGCTCGGAAAAGACCTCAAGATTTTCGAGCGGATCAGCCAAAAGCTGATG
AACCGTTTATCAATGACGGACATGGGAGATGTATCGTTAGTACTCGGGAT
GGACGATACCTGATACACGAATGAATGGGGGGACTTTTTTCGTTGGTTTT
GTTCGACTTCATGTTTTTGCGAAACGGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5812:3783..4813+

>mRNA_H-paniculata_contig5812.13414.1 ID=mRNA_H-paniculata_contig5812.13414.1|Name=mRNA_H-paniculata_contig5812.13414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig5812:3783..4813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGAATCGGAACAAGGGCCCTGCCATGACTGCGGCGGTACGTACGC
TCCCCTTTGTAGGCTTCAGAGAATCCACATGGTGCTGGCAATAGCGACCG
AGTACAACCTGGAGTCCTGGCAGCTAGACTACAACACCGGGTTCCGAAAC
GCTGGCGTCAGGGAGGAAGTCTACGTTAAGATGGTACCTGGATACGAGGA
AGTCGACGAAAACGGAGTTCCGTTGGTAACGAGGAATCTGAAGAGCCTCT
ATGTCCTTCGCCAGAGCCCATCGAATTGGTCGGGGACAATCGACAACATC
TGGTGGAGATCGGCTTCAAAAGCCTCAAGTCGGACCCATGTCTCTATATC
TACTCGGAGGGCGACGTCGTCATCATTTCGACCCTGTATGTCGACAACGT
TCTACTGCTCGGAAAAGACCTCAAGATTTTCGAGCGGATCAGCCAAAAGC
TGAATGCTAGAATCGGAACAAGGGCCCTGCCATGACTGCGGCGGTACGTA
CGCTCCCCTTTGTAGGCTTCAGAGAATCCACATGGTGCTGGCAATAGCGA
CCGAGTACAACCTGGAGTCCTGGCAGCTAGACTACAACACCGGGTTCCGA
AACGCTGGCGTCAGGGAGGAAGTCTACGTTAAGATGGTACCTGGATACGA
GGAAGTCGACGAAAACGGAGTTCCGTTGGTAACGAGGAATCTGAAGAGCC
TCTATGTCCTTCGCCAGAGCCCATCGAATTGGTCGGGGACAATCGACAAC
ATCTGGTGGAGATCGGCTTCAAAAGCCTCAAGTCGGACCCATGTCTCTAT
ATCTACTCGGAGGGCGACGTCGTCATCATTTCGACCCTGTATGTCGACAA
CGTTCTACTGCTCGGAAAAGACCTCAAGATTTTCGAGCGGATCAGCCAAA
AGCTGA
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