|
|
Homology
BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 117 bits (293), Expect = 4.000e-26 Identity = 101/284 (35.56%), Postives = 144/284 (50.70%), Query Frame = 1
Query: 4 IVVNFLWLKLSAGLELDNLVITSRQPAQWLSASRKPNQQISAHSSSPRASSETARMSSSVSGTXXXXXXXXXXXXXXXXXXXXRGKRTVAAAGVASAGAPDDRRDYFRGPWDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYMIMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVRI----------------------LSERNRVRREERGFLHAPCS--LYDARISTTMLLASLVCRLVDYGQDPTGEERTSRAENGEEWGLFEISVVLQA 783
+V++ LW KL+AG+ELD + PAQW ++ P S+ +A + + T XXXXXXXXXXXXXX GV + WD+T+APSLQAVLVGV P+V Y VPAAR+A +A+VY++ML +Y LY G + E++LY+W+L MC ++V L +R+RV+R + CS + + ST +L+A+++CRL DY QD G+ A +GE W F+ V L A
Sbjct: 317 LVLDLLWAKLTAGVELD-VHSCGANPAQW-------------YARLPGPSAGSAPAPAVTAATPVHNTAXXXXXXXXXXXXXXXXXXATRVEGVDPRRSSPGHLKNAAASWDITIAPSLQAVLVGVATGPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSVDPWEVLLYIWVLSMCFSEVATGVWGVVGDADTDPREGGTAAEPLGQRHRVKRSRKRGSLCSCSSPFFGGKFSTVVLMAAMMCRLGDYVQDSGGD-----AVDGE-WRCFQGFVALLA 580
BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.270e-17 Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 334 WDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYMIMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVR-----ILSERNRVRRE 597
WD+T+APSLQAVLVGV +RP+V Y VPAAR+A +A+VY++ML +Y LY G + E++LY+W+L MC ++V ++ + + RRE
Sbjct: 1159 WDITIAPSLQAVLVGVASRPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSIGPWEVLLYIWVLSMCFSEVTTGAGGVVGDADTERRE 1251
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 6 |
| Model size | 789 |
| Cds size | 786 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5804.13399.1 >prot_H-paniculata_contig5804.13399.1 ID=prot_H-paniculata_contig5804.13399.1|Name=mRNA_H-paniculata_contig5804.13399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
RIVVNFLWLKLSAGLELDNLVITSRQPAQWLSASRKPNQQISAHSSSPRA
SSETARMSSSVSGTTTLAAAQQASMATTNAAAALRGKRTVAAAGVASAGA
PDDRRDYFRGPWDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYM
IMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVRILSERNRVRREE
RGFLHAPCSLYDARISTTMLLASLVCRLVDYGQDPTGEERTSRAENGEEW
GLFEISVVLQAG back to topmRNA from alignment at H-paniculata_contig5804:2744..8583- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5804.13399.1 ID=mRNA_H-paniculata_contig5804.13399.1|Name=mRNA_H-paniculata_contig5804.13399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5840bp|location=Sequence derived from alignment at H-paniculata_contig5804:2744..8583- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATCGTGGTGAACTTTTTGTGGCTCAAGTTGTCGGCAGGGTTGGAGCT
CGACAACCTTGTGATTACGTCCAGGCAGCCAGCGCAGGTGAATGGCTTGA
AAAGACACTAAGGATTTAAGATTAGTGTAAGACATGCTGCTGCCGTTATG
TTTGTCTAGTCTGTATTTATTTGGCTGCAGTAGTGACCGGTTGTTACGCT
TGGTGTCTACTCACTAGTACAGAACGGTTTCTTTTTCTGTAGTTTTGTAG
ATTTCTCCTGTAATACATAAAAGACGCATTTAGAAAAAAAACATGATATT
TTTTTTGATGAAAATATTGAAAGGAAAGATCCATGGGGAAGCATTATTTA
GTGCGGGGACTTGAAAAACCGCCACTTTTATGCAATACATCATGCCCCGG
AAAGACACGAATAATTGGCGTATTCGCCACGAAAATGAAGAAGTATTCGC
CTGAGTTTCAGAATGAGCTCGTGTGTTTTTATGTGCCCCGGACCAATTAC
GACTGTTGATAATACTCGTGTATCAAATAGACAGGGGTGGATTCTTCATT
GGATGTGCCCGCTCATTCTGAAACTTAGACGAATATATATTTTTTCTTCG
TGGCGAATACGCCAATTATTCGTATCTGTCCGGAGGTGCAATACAATATA
GGACCCTGCACTGGAAACTCGTGAATTAAATCAACGTAAAATGGGTAGGA
TTCGCTTCATATCTAATGCAGGGCCCATTGAATATAAGAGGGACATGGAA
CACACGGTGAGATAGTCCCACACAGAAAGATTACAAAACCACGTCGATAG
ACAAAAATATTTTAGGGTTAATTGGCAAATTTCTGAATTTATCAGACTGA
CGATATCTAGATGGTGGTGCTCACGTTGGTTCTTTGTCGTCCGCCCGCCC
CACCCAACAATTACAAAAACAAAGTTGTTTGATTGTCCCCCTCGTACTTG
ATCATACATCAGACATGTTCAATATATCTCATATCTAGACCACTACTGAC
TGGATACTCCCTTTCCGTTTAACGTGCGCCCACATGTGCTATCATACCCC
ACTCACCAACGGCCATTCCACTACCCCACTACACCACGCAGTGGTTGAGT
GCTAGTCGAAAACCCAACCAGCAGATCAGCGCACATTCTTCGAGCCCGCG
CGCGTCGAGCGAAACCGCCAGAATGTCAAGTTCCGTTTCTGGAACGACCA
CGCTGGCGGCGGCGCAACAGGCGTCTATGGCAACGACCAACGCGGCTGCT
GCCCTCAGAGGTAAACGCACGGTTGCTGCTGCTGGCGTCGCCTCTGCCGG
GGCGCCAGATGATCGGCGGGATTATTTTCGCGGGCCCTGGGACGTTACGG
TCGCGCCGTCGCTGCAGGTGTGGTGTATGATAGTCTCTTTGCAATTAGGA
GTACCCGCCCATTTTTTGTTGGAAGGGACAGGGTAGGGGAGGGGCGAGGG
GGGTATACAATCATTTCCTTGTACCTATGTTGAAAGTTATGCGGCTGACT
TCAATCTGTGGTTGTGTATGCTTGTCAGAAAAACAATTTCAACAAGGGAT
AATTTTTGGTTCCCACAGCAAATCGTGAAAATGCCCGTTGAATTGGACAA
CTGTTTTTTTATTTCGAGAGATGAAATTTTACCCGATTAAAGACGACCTA
GAATTGATGGCAGCCAGCGGTGGTCGTAGCTGTTTTTTTGGGGGGGGTTG
TTTTCTCCATGTTTTTACTGGTGTCGCTCTTGGGTTTTGTGCTCTGTTTG
CGATAGTAATAAGAAATAAAAAAAAAGGAATACAGCATTTTTTTTTTTTT
TTTTGGTTATTCACATCGAAATCGCTCGTGGCTATTTTGTGGTGGCACTC
TGCTTGCGTGCACTGTACTGACGTGGGCAGGCCGTTCTGGTCGGAGTTGT
GGCAAGGCCGGAGGTTATGTACGGAGTGCCGGCTGCCAGGATCGCCTTCG
AAGCCCTCGTCTACATGTGAGTCCTTAGTAATAAATGCTTTGGTATTATA
CGTAAGTATGGAAAAATCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGT
AAAAAAATAGAAATAAAATACAAGGTTTTAGCGAGGTGGTTGTGGTCTTC
GCTTAGGAAGAGCTTTTCAAAATCTATACTCGCGGGATTCCTGAAAAAGT
AAAGTGCATTGCAGGATTCAACTTATTTCGAGCTTTCCGAGAACTTTTAC
GGCGCGATCGTGCACCTGCGTGTGTACCTATACAAGCGATTAAATAGCGC
AATCATGAACCTATGCGAGAGAGCAAACAGGAGAGATACAGAACGGGATG
AAAAAACGACGGAGAGGCAGAGAGACATGTAAGCTCGGGGGAAAACACAG
GCACCAAAGTATTGTCCGAGCTTAAAAAAACAGGATATACACCTCAATCG
GAGTCCCTGAGCAATTTCAAGAGTCAAATTTCATTGTTGTATGCCCGGTG
ATCGAAAAGGGCAGCAAAACAGGAACATGGTTGCAAGGGCATGTCTGTGC
GATTCGTAGACTATGGACAGCGTTTTTTGGAGGCTAGACGAACATGGCTA
TTCCGAAGGTACTGGATGAGTCACACCAGTATGTTGGTGAAATGGGAAAG
TTCGATTTGTAGACTGCGGACTAGGAGTTTTCTTTCATCGATTATATATT
GAAGACGGAATTTGAAGTACAAGTAAGTTACGTACCGTTGCAAGTAAGGA
GGTATCGTCGCCTCCACTGAATGAAGCTATGGTCTGTCCACTAGTACTGT
CTATAGTGAAGTGCTGCTAGGGTTCTTGTGTAGAAGGATGTGTATCGCTT
GTCTATATTTTAATTGCCATGTACTATACGCAGCGAACAGTCATACATGC
AGGTCCTGGTTATTTTCCGGATGGTACTGTACAGATTGAATACTCCATCT
GCCCGAGCTTTTCGATGCTCCATGGTATATCGAGTGCAACGCATATTTTT
TGCGTCACATGGACACCTTCCCCAACTCAAATAGATACAGTATTCATTCC
AGATTTCTCGTATTTATTCGTGTCTCGTGTTCGTATTTGTACGGGAGGTG
AAATACTCGCTCTCGGATGCTCTTGCCCCGCCCCACCCCCCCCCCCCCCC
ATCGCCTCTCGCTGGCCTCCAAGCTTCATCTAAGTTCTGCCCTATCGTCT
GTCTTCATTGCCCATGACGTATTGTTGTGCTCAGGATAATGCTGGTGGTA
TACGTGTCCGTGTTGTACAACACTCGCTCCGGGGTTTTGTCCGTGGCTGA
GATGGTGTTGTACGTCTGGATCTTGGTGAGAGGTCGATGACTGCCTTGGG
GTATCAATCAGTACCTAATTACAAAGTGTCCCCCTCCTGGAAGGCTAGAC
GGAAATTTAGAAGTATTCGCCTCTGAATGAGCATGTTTATTTCATGCTCC
CCCGGGCCATCTACGACTGCTCCGAATAGCAGCAAAACGAATAAAACAGC
GGCCAACGTTTCATTCTTTGGGTCATCCCCCATATTCTGAAGACTCGGAC
GAATATATATATATATTTTAGTTCTAAACCAATCGAAAAGCACAGTAAGG
ATTCGATGATAAGAAACTCTTGTTTCGGATGAGGCTCGAAGCGTTATTTT
TGTCGAAAATCATGACCTGGTAGCACTGTTTTTTATATAGGAATTAGTAT
AGGACCACAATTTGAGCGCGCTATATGTTGTTGCATCGAATTGTTTTTGT
ATGGTTGGCCAAAAAGTGATCTGTGATTTGTTCTCAGCGGACCCGTACTG
TCCTCGTATTCGTTCGAGGCCTGGGAGAGTTGAGTGTCACACAAAAGAGT
CGGTGAAATATAGTTCACTGGTGATGTGGTAGCCACGGCTATCGTTGCGC
TTGCACAGTAGTTCATTTTTTTTTTTTTTTTTTTTTCAATTTTCTTGACT
ACAGGCTTGAAAAACTGTTCCCAAACGAAGGCAACAACGACAACTACGAT
CATCTTACTAGGGCCTTATTGAAATAATGAGGATACTTGACTTCGCTCGA
TGAAGCTGCACGAATTTCACATACTTGCAACTGCAGCAGCCATGGCCATG
TCCCCCAGGAAGAGTGTGTTGCCGCCGGCCAGTAGTAGATCATCCCACAG
ACGACAGAAAGCCGACCACAGTTCCGCTGGTGGACCGATCTCAAATAGGC
AGGTGTTGGGTGTATTACGGAGCAACATAATAATCAGGAGCAAATTAGAA
AGTTGACATTTTGAGGTGTTAACTCATGCAATACGATATGCACCAATTGG
TTGCTGCATGCATTCATGCCTTTGCAAGCGTTTTTAGAGTGTGTTTTTGT
TTTCAGCTAGAAGCGAAAATCTGTAGACCCAACAGGGAAAAAGAAAAAGA
AAAAAATTCCGAAAAAAGAAAAAAAAATGCTCCTGATTATTATGTTCCTC
CGCACTAGTTTAAAACACCTATGAAGTCCCAAATGCCCACTTTTCGCTCA
AAAACTACATCAATTTTTCCAGCTGTCACGACGCAAATCGGACTTCTTTT
CGTCTGCCACCCCTATCCCCTTATTGGTCATCATCTAATCTTGCTGATAA
GTGTATACTGCGGATTGAAGGCAGCTGCATAACCTCAACATGGGTACAAT
AGATTTCTGATTATGAGGTCTCAGAGTTATATAGGTGAACTAGCTGTAGC
AGGGTTAATTCACTACAGTAATGAGAATTTCAGTAATAATAGTGAAAATG
AAGGACTGTTTTTTTCATTTTCATGGTTGTCAGTCGTTATTGTCATACTC
CTATGGAGACTATTTGATGTTTTACCTGCACACTACAGTACACATCCGGG
GGATACAGTGATACTCCCCGTTGTGAAGTTTGCCTCAACCCCATCCCCGC
CCTCTCCTCCCTTATTCATGAAACGCCTCTACCGAATACCCCTACTCAAA
TGCCCAGGGGATGTGCGTGGCCCAGGTGCGAATCCTGTCGGAGAGAAATC
GAGTCAGGCGAGAGGAGCGTGGATTTCTTCATGCCCCGTGCAGCCTGTAC
GACGCCCGCATATCCACGACTATGCTGCTGGCTTCACTGGTGTGCAGACT
GGTCGATTACGGGCAGGTGTGCTGGTGTTTCCTGTGTGTCTTGTTCTGTA
CCGTTTGGTTTATTTTATTTTATGTTGTGGTTGTTGATATCATCGTCATG
ATTCATTGTTGTTATTGCCATCCTCCATTGTTATATGGTTGTTAGTATTG
TTGACCACGGGCTGTATTGATACCAGGTATCGAGGCCAGCACTGACGATG
CCTTTCGCTTTTCGCACGAGTTAATGGAGATACAAATATGGTGCAAGTCA
CACACCATTCATTGCTCGGACGGAGGGTTCATTTTCAAGGAGAATCACCT
CTATGAAAAACCGAACCTTTACGTTGGTCAACCGTCATCGTACGCTAGAA
TCGAACACCCCCCCCCAAATGCGTGAAGGAAGATTTTTTTTTTAATGACA
TTCATGTTTTGATTGATTCGAACGAGCTTCGGAAAGCGCCGAATATGCCC
GTGCTGTTATGTTATATTGATGTTCCAAAATTCATTATCACCTTCATCCG
AGTTGTGTACCGTTCGTTGTCCAGATAAATGCCCCCTGGTCCTTACCTGG
TTTCATAAATATTGGTACGTGCATCTTCGGTGGGTTGTATCTCAGTCTCC
ACGAAGAGGCTCTTGTGTGATGGAGGCATGGATGTAAAGTAAAGATCGCG
ATGTTTCATTTGAGCTGCCCCATTTTTTTATTTTATTTTTTCATTTATTC
AGGATCCAACCGGGGAGGAACGCACCAGCCGCGCGGAAAACGGAGAAGAA
TGGGGCTTGTTCGAAATTTCCGTTGTGCTTCAGGCGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5804:2744..8583- >mRNA_H-paniculata_contig5804.13399.1 ID=mRNA_H-paniculata_contig5804.13399.1|Name=mRNA_H-paniculata_contig5804.13399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig5804:2744..8583- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATCGTGGTGAACTTTTTGTGGCTCAAGTTGTCGGCAGGGTTGGAGCT
CGACAACCTTGTGATTACGTCCAGGCAGCCAGCGCAGCGAATCGTGGTGA
ACTTTTTGTGGCTCAAGTTGTCGGCAGGGTTGGAGCTCGACAACCTTGTG
ATTACGTCCAGGCAGCCAGCGCAGTGGTTGAGTGCTAGTCGAAAACCCAA
CCAGCAGATCAGCGCACATTCTTCGAGCCCGCGCGCGTCGAGCGAAACCG
CCAGAATGTCAAGTTCCGTTTCTGGAACGACCACGCTGGCGGCGGCGCAA
CAGGCGTCTATGGCAACGACCAACGCGGCTGCTGCCCTCAGAGGTAAACG
CACGGTTGCTGCTGCTGGCGTCGCCTCTGCCGGGGCGCCAGATGATCGGC
GGGATTATTTTCGCGGGCCCTGGGACGTTACGGTCGCGCCGTCGCTGCAG
TGGTTGAGTGCTAGTCGAAAACCCAACCAGCAGATCAGCGCACATTCTTC
GAGCCCGCGCGCGTCGAGCGAAACCGCCAGAATGTCAAGTTCCGTTTCTG
GAACGACCACGCTGGCGGCGGCGCAACAGGCGTCTATGGCAACGACCAAC
GCGGCTGCTGCCCTCAGAGGTAAACGCACGGTTGCTGCTGCTGGCGTCGC
CTCTGCCGGGGCGCCAGATGATCGGCGGGATTATTTTCGCGGGCCCTGGG
ACGTTACGGTCGCGCCGTCGCTGCAGGCCGTTCTGGTCGGAGTTGTGGCA
AGGCCGGAGGTTATGTACGGAGTGCCGGCTGCCAGGATCGCCTTCGAAGC
CCTCGTCTACATGCCGTTCTGGTCGGAGTTGTGGCAAGGCCGGAGGTTAT
GTACGGAGTGCCGGCTGCCAGGATCGCCTTCGAAGCCCTCGTCTACATGA
TAATGCTGGTGGTATACGTGTCCGTGTTGTACAACACTCGCTCCGGGGTT
TTGTCCGTGGCTGAGATGGTGTTGTACGTCTGGATCTTGGATAATGCTGG
TGGTATACGTGTCCGTGTTGTACAACACTCGCTCCGGGGTTTTGTCCGTG
GCTGAGATGGTGTTGTACGTCTGGATCTTGGGGATGTGCGTGGCCCAGGT
GCGAATCCTGTCGGAGAGAAATCGAGTCAGGCGAGAGGAGCGTGGATTTC
TTCATGCCCCGTGCAGCCTGTACGACGCCCGCATATCCACGACTATGCTG
CTGGCTTCACTGGTGTGCAGACTGGTCGATTACGGGCAGGGGATGTGCGT
GGCCCAGGTGCGAATCCTGTCGGAGAGAAATCGAGTCAGGCGAGAGGAGC
GTGGATTTCTTCATGCCCCGTGCAGCCTGTACGACGCCCGCATATCCACG
ACTATGCTGCTGGCTTCACTGGTGTGCAGACTGGTCGATTACGGGCAGGA
TCCAACCGGGGAGGAACGCACCAGCCGCGCGGAAAACGGAGAAGAATGGG
GCTTGTTCGAAATTTCCGTTGTGCTTCAGGCGGGGGATCCAACCGGGGAG
GAACGCACCAGCCGCGCGGAAAACGGAGAAGAATGGGGCTTGTTCGAAAT
TTCCGTTGTGCTTCAGGCGGGG back to top
|