mRNA_H-paniculata_contig5804.13400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5804.13400.1
Unique NamemRNA_H-paniculata_contig5804.13400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5804.13400.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.060e-21
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 KCVRECFLEAVASARNPLVPALSIMKTISSARP--SCPLHASWYAWMRKALERLAVEVLTNLPVAVRALH 204
            +CVR+CFLEAVASARNPLVP+L ++ ++S+AR   SCPLHASW+  M+  LE+L ++VLTNLPV+ RA +
Sbjct:  821 RCVRDCFLEAVASARNPLVPSLGLLSSVSTARKEASCPLHASWFLLMQNTLEKLVIQVLTNLPVSARAFN 890
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5804.13400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4C8_9PHAE3.060e-2161.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5804contigH-paniculata_contig5804:11479..12975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.3827865-CDS-H-paniculata_contig5804:11479..116391622930630.3827865-CDS-H-paniculata_contig5804:11479..11639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5804 11480..11639 -
1691481380.5528698-CDS-H-paniculata_contig5804:11479..116391691481380.5528698-CDS-H-paniculata_contig5804:11479..11639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5804 11480..11639 -
1622930630.396972-CDS-H-paniculata_contig5804:12931..129751622930630.396972-CDS-H-paniculata_contig5804:12931..12975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5804 12932..12975 -
1691481380.5636578-CDS-H-paniculata_contig5804:12931..129751691481380.5636578-CDS-H-paniculata_contig5804:12931..12975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5804 12932..12975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5804.13400.1prot_H-paniculata_contig5804.13400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5804 11480..12975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5804.13400.1

>prot_H-paniculata_contig5804.13400.1 ID=prot_H-paniculata_contig5804.13400.1|Name=mRNA_H-paniculata_contig5804.13400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
KCVRECFLEAVASARNPLVPALSIMKTISSARPSCPLHASWYAWMRKALE
RLAVEVLTNLPVAVRALH
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mRNA from alignment at H-paniculata_contig5804:11479..12975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5804.13400.1 ID=mRNA_H-paniculata_contig5804.13400.1|Name=mRNA_H-paniculata_contig5804.13400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1497bp|location=Sequence derived from alignment at H-paniculata_contig5804:11479..12975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTGCGTGAGGGAATGCTTCTTGGAGGCAGTGGCTTCCGCCAGGTGAGA
CGGGTGATCTGTGATTTACATGTATATATATATATATATATTAACCATCC
AGTCCAGTTTATAAGTCAGTAAGTGGGTGATACCAAGTTTGATGTCGTTT
TGTTCATTTAATTTAGTAAATTTCCCCATCAAGTGAGATGCGCTTCAGTG
ATGTTTATACCACCGGAGCACGTACATATTGTGGGTCATGAGCATACGCT
ACCTTGCGTACCACAAAAGCTTTGACCTCTAGCGGATTAGAGCTCTTCCC
TTGATGCTCAAAAGTAGAAACGTCCGAGGGAAGGGCATGTAGTCGTACTC
GAAAATCGAGCACTTGACGCGAAGATACGAAGGAAAAAACCTTCTGCTAT
TTATTATCCATGTAACAAACCTTCAAGAAGGAGTCTATACAAGCGAATTT
TGAAGTCGGTTGCTTAACCTAAGGGGGTGGTTACAATGGAGTGTCATTAT
TTGAGCTTCAGAACTAAAATTTAACTTTAGCAAGGACTGACTTTTACAAA
TGAGAACCCCAGTGGGTGAAATGGGATTGTTATTTCAGGGGTCCATTTCA
TTCGTTTTCATGTGAAAAGTATTCACCCTCCGGACAAATGCAAATAATTG
GCGTATTCGCCACGAATGAAATGTATACATACTCGCCTGAGTTTCAGAAT
GAGCGGGCACATCCAATGAAGTACCCCCCCACCCCTGTCCATTCGATTTA
TGAGTAGTATTAGCTGCCGTGGATGCTTCGGGGCACATAGAATTAACAAA
CTCATTTTGAAACTCAGGCGAATACTTAAAAAAAAAATCCTGGCGAGTAC
CCTAATTATTCGTATTTGTCTGCGGGGTAACTGTATGTCATATTTACCTA
TAGAAGAATACCTGCGAGTGGTAGAGTAATACTCCTTTGTGAAGTTTTGC
CGTAGCCCAATGTCGTACCTGGTGGAAGAGGTGCGACATGTACTGGTACT
TGGGTGATGATGGGCATGTCATGTGAGGAGGATCCTTCCGATCTACCAAG
CAGCACAGATACCGAAATACCCGTGAAGTCCGTTCGAAAGTCACTTCACC
TGATGTACAAACAAATCCTTGGATGGATCTGGATGCGTTGTAGAGGTGCC
TCCCTCTACTTGATCTCTACAAGTGAAGTTTGAGGTCAGCCCTATAACCT
CAACATGGGCACCCTCCTCCCTCCCCCGCGCGCGCCAAATACGCTACTTT
CATCATGAAACCCCTGCCCACGTTACACCAATCTCAATCACAATGAAACT
ACCCGTCCACGTCCGTTCCCACCTCCCGTCGTTCAGAAACCCACTAGTGC
CTGCTCTGTCCATCATGAAGACCATCTCCTCCGCCCGGCCCTCCTGCCCC
CTACATGCCTCGTGGTACGCCTGGATGCGTAAAGCCTTAGAGCGCCTCGC
CGTCGAGGTCCTCACGAATCTCCCTGTAGCCGTGCGCGCGCTCCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig5804:11479..12975-

>mRNA_H-paniculata_contig5804.13400.1 ID=mRNA_H-paniculata_contig5804.13400.1|Name=mRNA_H-paniculata_contig5804.13400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig5804:11479..12975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTGCGTGAGGGAATGCTTCTTGGAGGCAGTGGCTTCCGCCAGAAGTGC
GTGAGGGAATGCTTCTTGGAGGCAGTGGCTTCCGCCAGAAACCCACTAGT
GCCTGCTCTGTCCATCATGAAGACCATCTCCTCCGCCCGGCCCTCCTGCC
CCCTACATGCCTCGTGGTACGCCTGGATGCGTAAAGCCTTAGAGCGCCTC
GCCGTCGAGGTCCTCACGAATCTCCCTGTAGCCGTGCGCGCGCTCCACAA
ACCCACTAGTGCCTGCTCTGTCCATCATGAAGACCATCTCCTCCGCCCGG
CCCTCCTGCCCCCTACATGCCTCGTGGTACGCCTGGATGCGTAAAGCCTT
AGAGCGCCTCGCCGTCGAGGTCCTCACGAATCTCCCTGTAGCCGTGCGCG
CGCTCCAC
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