mRNA_H-paniculata_contig58.13395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58.13395.1
Unique NamemRNA_H-paniculata_contig58.13395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58.13395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58contigH-paniculata_contig58:56796..58089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size753
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58.13395.1prot_H-paniculata_contig58.13395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58 56986..57979 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.2342625-UTR-H-paniculata_contig58:56795..569851622930629.2342625-UTR-H-paniculata_contig58:56795..56985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58 56796..56985 +
1691481380.0040834-UTR-H-paniculata_contig58:56795..569851691481380.0040834-UTR-H-paniculata_contig58:56795..56985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58 56796..56985 +
1622930629.2799473-UTR-H-paniculata_contig58:57979..580891622930629.2799473-UTR-H-paniculata_contig58:57979..58089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58 57980..58089 +
1691481380.0334923-UTR-H-paniculata_contig58:57979..580891691481380.0334923-UTR-H-paniculata_contig58:57979..58089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58 57980..58089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.248787-CDS-H-paniculata_contig58:56985..570981622930629.248787-CDS-H-paniculata_contig58:56985..57098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58 56986..57098 +
1691481380.014866-CDS-H-paniculata_contig58:56985..570981691481380.014866-CDS-H-paniculata_contig58:56985..57098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58 56986..57098 +
1622930629.2630622-CDS-H-paniculata_contig58:57639..579791622930629.2630622-CDS-H-paniculata_contig58:57639..57979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58 57640..57979 +
1691481380.024269-CDS-H-paniculata_contig58:57639..579791691481380.024269-CDS-H-paniculata_contig58:57639..57979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58 57640..57979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58.13395.1

>prot_H-paniculata_contig58.13395.1 ID=prot_H-paniculata_contig58.13395.1|Name=mRNA_H-paniculata_contig58.13395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MPQISSVRTRSTTVADIVFIPACCQANKGGMNPLIRRRTIHCPLKDWEVV
AAICVNFREVVGKEAAKSPPHVWVSLADQQGFYEEEEEEESFRSDGEAED
SYSHGDWSHDAVCVRSRGIYVHVVVKGCCVPSIFDDDYTSSWRSIWGWRP
*
back to top

mRNA from alignment at H-paniculata_contig58:56796..58089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58.13395.1 ID=mRNA_H-paniculata_contig58.13395.1|Name=mRNA_H-paniculata_contig58.13395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1294bp|location=Sequence derived from alignment at H-paniculata_contig58:56796..58089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGTTGGGTGATAATGACGTCATGGGCTCGGCTCCGGAGGTACTTCTG
TTGAGAGACAACCTCATTTTCTCGTTGTAGATGCTGGCGGAGATGTTGCA
TACCTCACTGAACTGGGCCCTGATCCTGCCCACCGGTGCATTCAAGCCCA
GGTCTTCATTGAGTCTTTGCTCGTGGGCAAGGAGGGAGTTATGCCACAGA
TTTCGTCCGTAAGAACGCGGTCCACAACCGTCGCGGACATAGTGTTCATA
CCTGCTTGTTGCCAGGCGAACAAGGGGGGTATGAATCCACTCATCAGGCG
CAGGTAAGGTACAATATCAACCATACCGCCCTGTTTGCAGGTACAGATGC
AGCGGCACAAACGGTGATCAGGCAAGAAAGCACTGGCTTAGCGTCTCGTG
CAGTACCGTACAGTGTTGGAGAAATTTTAAAATCAAAGTAGACGACAATA
CGATGCGGCGTCGCGTGGGTGGTGGGACAAGTCGGTGCATATCTGAGACC
ACGATGTACGCTTTCGTGTGTGAGATACGGTACAGTTCACATGGGTACAC
ATAACGGTGGGGTATGTTGTTCGTGAATTGCTGTGCCTCGAAAGTGAGGT
TTCAGAGACACTGTCATATTATTATATCAAACGTAGTATATCCCGATCAA
CTGCAATGTTAGAGTCTCGAATATGGGTTTTAAATACAGCCCCAAATTAC
CCTCATTTCGTCGAAGGCTGTAATCAAAGCTCCACCTCTCTATCCCCTCG
AGTTCATCGCGAGCGCTGGATAACTACCGCCTCTTGTAGTGCGGAATGCG
GTCATACGATGGCGTCTCCCTCTCTTTGTACGCTTCTTGCACAGGACGAT
ACATTGTCCACTGAAAGACTGGGAGGTAGTGGCAGCTATATGCGTAAATT
TCAGGGAGGTAGTTGGGAAGGAAGCTGCCAAGTCTCCACCCCATGTTTGG
GTCTCTCTAGCCGATCAGCAAGGCTTCTACGAGGAGGAGGAGGAGGAGGA
GAGTTTTCGGTCAGACGGCGAGGCGGAGGACAGTTATAGCCACGGCGATT
GGAGCCATGATGCTGTTTGTGTGCGCAGTAGGGGAATTTATGTTCATGTT
GTTGTTAAGGGTTGTTGTGTGCCCAGTATTTTTGACGACGATTATACATC
TAGCTGGCGCTCAATATGGGGATGGCGGCCTTGAATAGCACCTACTTCTC
CCTTTTTCTCAAGTTACAAGTCGGTACCAGTGTCAACGTGTGGCTGCGGA
AAGCATGAAAGTACCCCGGAATAACTACTCCGCCCAGGAAAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig58:56796..58089+

>mRNA_H-paniculata_contig58.13395.1 ID=mRNA_H-paniculata_contig58.13395.1|Name=mRNA_H-paniculata_contig58.13395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig58:56796..58089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACAGATTTCGTCCGTAAGAACGCGGTCCACAACCGTCGCGGACAT
AGTGTTCATACCTGCTTGTTGCCAGGCGAACAAGGGGGGTATGAATCCAC
TCATCAGGCGCAGATGCCACAGATTTCGTCCGTAAGAACGCGGTCCACAA
CCGTCGCGGACATAGTGTTCATACCTGCTTGTTGCCAGGCGAACAAGGGG
GGTATGAATCCACTCATCAGGCGCAGGACGATACATTGTCCACTGAAAGA
CTGGGAGGTAGTGGCAGCTATATGCGTAAATTTCAGGGAGGTAGTTGGGA
AGGAAGCTGCCAAGTCTCCACCCCATGTTTGGGTCTCTCTAGCCGATCAG
CAAGGCTTCTACGAGGAGGAGGAGGAGGAGGAGAGTTTTCGGTCAGACGG
CGAGGCGGAGGACAGTTATAGCCACGGCGATTGGAGCCATGATGCTGTTT
GTGTGCGCAGTAGGGGAATTTATGTTCATGTTGTTGTTAAGGGTTGTTGT
GTGCCCAGTATTTTTGACGACGATTATACATCTAGCTGGCGCTCAATATG
GGGATGGCGGCCTTGAGACGATACATTGTCCACTGAAAGACTGGGAGGTA
GTGGCAGCTATATGCGTAAATTTCAGGGAGGTAGTTGGGAAGGAAGCTGC
CAAGTCTCCACCCCATGTTTGGGTCTCTCTAGCCGATCAGCAAGGCTTCT
ACGAGGAGGAGGAGGAGGAGGAGAGTTTTCGGTCAGACGGCGAGGCGGAG
GACAGTTATAGCCACGGCGATTGGAGCCATGATGCTGTTTGTGTGCGCAG
TAGGGGAATTTATGTTCATGTTGTTGTTAAGGGTTGTTGTGTGCCCAGTA
TTTTTGACGACGATTATACATCTAGCTGGCGCTCAATATGGGGATGGCGG
CCTTGA
back to top