mRNA_H-paniculata_contig5776.13365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5776.13365.1
Unique NamemRNA_H-paniculata_contig5776.13365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5776.13365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5776contigH-paniculata_contig5776:8885..13439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size486
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5776.13365.1prot_H-paniculata_contig5776.13365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5776 8885..13438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.1604517-CDS-H-paniculata_contig5776:8884..90221622930626.1604517-CDS-H-paniculata_contig5776:8884..9022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 8885..9022 +
1691481378.449996-CDS-H-paniculata_contig5776:8884..90221691481378.449996-CDS-H-paniculata_contig5776:8884..9022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 8885..9022 +
1622930626.1764185-CDS-H-paniculata_contig5776:10541..106911622930626.1764185-CDS-H-paniculata_contig5776:10541..10691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 10542..10691 +
1691481378.4584746-CDS-H-paniculata_contig5776:10541..106911691481378.4584746-CDS-H-paniculata_contig5776:10541..10691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 10542..10691 +
1622930626.1948397-CDS-H-paniculata_contig5776:12855..129831622930626.1948397-CDS-H-paniculata_contig5776:12855..12983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 12856..12983 +
1691481378.4664667-CDS-H-paniculata_contig5776:12855..129831691481378.4664667-CDS-H-paniculata_contig5776:12855..12983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 12856..12983 +
1622930626.2154055-CDS-H-paniculata_contig5776:13371..134381622930626.2154055-CDS-H-paniculata_contig5776:13371..13438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 13372..13438 +
1691481378.4758065-CDS-H-paniculata_contig5776:13371..134381691481378.4758065-CDS-H-paniculata_contig5776:13371..13438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5776 13372..13438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5776.13365.1

>prot_H-paniculata_contig5776.13365.1 ID=prot_H-paniculata_contig5776.13365.1|Name=mRNA_H-paniculata_contig5776.13365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
RLLSRVQVSLSEATGIFWCDCTALFEMEDYPSQGDKETRRQVITEEDDDS
GFSGNEGDGPRSGGANATHGGSSNNPLTGTGLSSDSEDEEEGDAGGGEDG
AGSGDEDAPVEASGAAAAGGDSMDDDDDDNNNNKSSSAMKDLFGDDDEDD
DDDDEAADGGG
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mRNA from alignment at H-paniculata_contig5776:8885..13439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5776.13365.1 ID=mRNA_H-paniculata_contig5776.13365.1|Name=mRNA_H-paniculata_contig5776.13365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4555bp|location=Sequence derived from alignment at H-paniculata_contig5776:8885..13439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGTTATCCAGAGTACAGGTATCATTAAGTGAAGCAACAGGGATATT
CTGGTGTGATTGCACGGCCTTGTTCGAGATGGAAGACTACCCATCCCAAG
GGGATAAGGAGACAAGGAGGCAGGTCATCACAGAAGAGGTATGTGTTTGT
GTGTCCGTTTGTGTTATTCCACTCCAGGGATAAAGAAACGGATGAATTTG
TTGTGGGGAAAGAGCGTCCGCGTATTTTTGTAGCCGCGTTCCTTCTGGGT
AAGTTACACACACAGCTCTAGCGTTACAAATATCCGATCTCGGTGCTCGT
GCAGCAGCTTGTATCCGTGCTTGTTGGGCTCGGTGCACTCGTTGACAAGT
ATCCAGCAGAGACTGCCCGGTGGTTCTTGTATATGGCTGTACTTCACTAC
ATTAGAGTAGTATCTGGACCGCGGGTACTGATGGACTGCTCTGAGGCTGC
TCCGTGCGGCAGGCAGTGTCGGAACAAGAACAGTATGTTACCTGACAACA
AATGTCGAGTCCTGAAATGGTTGCGACCAAAAGGGCCACGCCGACTGTTT
ATCTGTTCTTTCACGTATGTACTAGTGTCGGCGCTTAACTGTCTTGTCGG
AGGAACGGCAGCTATCCGCGTTCGTTTTTGTTCATAATAAGCGTCTTTCC
CCCTCTGTTTCGAATGTAGGAATTTGATGGGGGATTAAATTTGGAAATTG
GCGCTAATAGTGTTACGTAAACACGATTGAGCCAACGCCCGGGCTAACAT
GGCAGGGGGAAACAGAACTGAATGTTGTAAAATTCACCCCGAATGTCCAG
GCTGTTGCGTGAGGACTCCTCGGTCGTGTTCGATTTCCTTCTGTTCATCC
CTACAGTAACACCTCTACAGTGTGGTAAATGGCTGCTGTTCCGCAGGCAT
AGATCAGTGTCGTCAAGGGTCTGGAGTCACTGCTTGATTGTCATTGGGCC
GTACCGGACCCCCCCTCCCCTCTAACCCGCAGTTATGACTATATACTGTA
GTTGATCATTCATAAGCAATTTTGAACCTCAAAGGGGACGTCACCGTGGA
TAGGCATTGATGATGCTGGTGAGCGCCTAGCACGTAGCTGGCAGCGATGG
TGCAAAGCAGGGCGTGAAAGAGGCCTCTGGTCGGCCGGCCGTCTTTCGCC
ATACGCTTGAGCTGGCGCCGAGACCCCTCCCCCTTCCCATGTGCTGCCAG
AGCCCCCCTCCGGTGGGCCCCCCCGAAGTAGATCAGTATTTTTTTATATT
CCGCCAATTTCAGGGCTCTGCGGAGAAAAAAAAAGGCTCTCTGAAAAGAA
AAGCTAGACTAGATGCAATCCTCGCGCGGATCAAAACTATAAGATATGAC
AACACTATTCACCTGGAAGATTCACCATGGGCAAGGTAAGACGATTAAAC
CGGGGTCAGCACTTTATTATGCGTGCATACGGGTCATTTCGCACATGCTG
AAGCTCAAGAGTTCTTTTCAAGCTTTCGTCTGAGCCATAAAGCATATTTT
GAAGCATTCGTGTTCCTCCGTAGAGCGTTTTTCTTTTCTTTTTTTTCGCA
CACCCGACGAGTCGACCCGACCGACCCACCCCCTTGGGGCAAGTCTTTTT
TTATTTTTCAATGTCCTGTTTTGTTGTTCACCATCGATGCCTTCGGCACG
CCAATAGGATGACGACAGCGGCTTCAGCGGAAATGAAGGCGATGGTCCTC
GAAGCGGAGGAGCCAATGCTACGCACGGGGGAAGCAGCAACAATCCACTG
ACTGGTACCGGGCTCTCGTCGGATAGCGAGGACGAGGAGGAAGGCGATGC
AGGGGGGGTGAGGCCAGGCCACGTCTGTGAAGGGGGGTCATTAGATATTG
CACTGTGAACAAAGATCGTTGCTCTAATGATTTTTTTTTTCTCTTGTTTT
TTCCTTGTTAGTCCCTCTTTTCCCCTTTTTTGCTCTAGAGCTCGCACGCA
TTGCCCACACATACACCGTAAAATACAAACCCAATGGAGGGTATCGATCG
TACGGACCCGCGTTCGAACGTTGAACGTTGTTCAAACGTGACTGTTTTTG
ATATCTGTCTCGAGAATGGAGATATGACTTAAGTGGCGGTGGAGGAGAAT
AACGTCCTTCAATCGACAGAGAGATCGATCTACTCTGCAAGATATTCCCA
ACGACACACTCATTCGTTGTCGGTAAATCAACGCCACTACGTAATTCTCG
AGAAAATACAACATGACGTCTAAATGGTGTCCCCCTTCTCCAATAGTGGG
ATCGATAACCTGCCTCCATTGGGCTTTGTTCATCATACATTTTGGTTAGC
AGGATGGAATCTATGGATCTTTTGGGGGCTCACATTATACGGGGTGGCAA
TTTTATCGTCCCCCAAATAAATTCGAATACTTTCGAGCGTTCACGACGGA
TATTGAATAGTGCACCCTGCTGAAGACTACGACTATAAATGTCATATGTC
GGACGGAAATTGATCCGTCTTGCCAATCACTTGTTATTAGTGTACATGAT
CCATACATAGCCCACGGCTCCTTGGGTCCTGTTCCTAGCTTCGCTCCCAA
GAGTGCTGGACGCCGAAAACGCAGAGTAGCGCAAAAATTGCGCTTGAACT
TATCTGACCCGCGGTCACGTCTTTTTTGTTATCCCGGACCAACGGGTCTG
ACAAGTCCTCTTTCTAGTGATTCGGAAGGATCATGATCCATCCGACGTGT
GGACTATTTGCGACTATTTAAAAGTATGGTCGCCTTATATTCAAAATAAG
CACTTTTGTTCTATGTGCTACGGAAGGGCCATCTACGGCTAACTGCCCAG
AATACTAGGAAAAGGAAAAACAGGAGTGAATACTTAGCTCTATATGTCAT
CATTCATCATCCACTCCGCACGTTTTGAAGCTTAGACGAATATTTTCCCC
TTAATGGTGCATTGTGCACAGTGGGGAATACGTGAACGCGAATATGTCAT
TGAAAGAGGTGTTTGATTATTTATTTATTTTTGTTTCCGTCGAACAACTG
CTGTGCGGTATTGCGGAGTATCTCACACACGTAGGTTGTTGTGTCCTGTT
TCTGACTGTGCTGTATAGTACTCTCAGAGCGGTACGGCTGGGGTGGTAGA
TGTAGTCCTTGGCAATGGTCTGGTCTCTTGTATTAGCTGTGTATTGCTAT
ATACAGTCAGGGACAGCCCTGGGTTTTTTTTAGAGAGGGGGGCAGGCGGG
CGGGTTAGGCCAGCTAAAAGAATCAAAATGAGGATGACCAGGGGATGCCT
GGCTGGCCATCCCTGGTTTTTGACAGGGCGGATAGATTTTCCACGAAAAT
ACGAATTGTTTTTTTCACGAATTAGACAAAAAATGTCAACACACATCAAC
TGTGGAATAGGGAAGGTGGAAGATATCCTATATCAAACCTCTGCACTGTC
TGCTCTTTGCTGTCTCTGGACAAAACACTCTCAGCGGCTGGCATGACCTA
GAGACGATTTATGAGGCCTCAAGGGCCACTTCGCGTGAGCTAGCTCTGCT
TCGCTGCTGCGATGGGTGCGGCCCTGGGAGGGCGGCATCACCTGACAAAA
TGATAAAAATATAAAATAAAAGAGTTTTAGAGAGCTATTCGTTTTTATGC
CAGCCTCTCTTCTCATGGGAAAATAAGACGTTTTTATTTAAATAGTCGTC
AAACGGCAGAAGTTATGCCGCAAAATGTTTACGTGGGACGTGTATAACCT
ATATATATACCTGGATAGTGGTAATATTAAAACGCCCGAATAGGTAAAGC
GCGCGCGAAGCGTCCAACATTTGGATAATGACCTTAAGATTAAGACTGAT
AATAACACTACGAACTGAGTTAGCAATGCTGTTTATTAATTTTTTGTTTT
GATTAATATATATATATATACATACACATACGTGGTGTTTTGTCCCTTTT
TTTTTTGTGTGTAATTCTGACACTACTACTACTGTTTTGATTATTGAATG
CTGTGGGGGGGGGTTTCGTAGGGAGAGGATGGTGCAGGAAGCGGGGATGA
GGATGCTCCGGTCGAGGCGTCAGGGGCTGCCGCTGCCGGGGGTGACAGTA
TGGATGATGACGATGATGACAACAATAATAACAAGTCCAGCTCGGCCATG
TACGTCGATTTTTTTTCATGTTTTTTTTTTTTATCGTAGCAAAGGGGAAG
TCTCTTATGGGCGTCAGGTTCATTTTTTGCTTTTGCTTTTTTTTAGATAC
TTTTTTTTTTTTTACTTTTTTTTTTTCACTACAGCAGCTTTGTACTAGCG
AACTGTATTGGCTCATGCAAAAGAAGAATCGAATTTCGAAGACATGGATC
GAACGAAATGCCCATAAGCAACTATGTTAATATTCGTTCTTATTTTCTTC
TTTCTTGTCTTCTCTTATTTTTCCTTCTTTTTTTTTCCTTTTTTTTTTTC
CCCCTTTTTTCTTTATTCTTAATAATTTGTTCTTTGTATGTATATATACA
CAATTCTTATTTTCTATTCCACTCTCGATTCCTGCAGGAAGGATTTATTC
GGAGATGACGACGAAGATGATGATGACGACGATGAGGCCGCAGACGGGGG
TGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5776:8885..13439+

>mRNA_H-paniculata_contig5776.13365.1 ID=mRNA_H-paniculata_contig5776.13365.1|Name=mRNA_H-paniculata_contig5776.13365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig5776:8885..13439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGTTATCCAGAGTACAGGTATCATTAAGTGAAGCAACAGGGATATT
CTGGTGTGATTGCACGGCCTTGTTCGAGATGGAAGACTACCCATCCCAAG
GGGATAAGGAGACAAGGAGGCAGGTCATCACAGAAGAGAGGTTGTTATCC
AGAGTACAGGTATCATTAAGTGAAGCAACAGGGATATTCTGGTGTGATTG
CACGGCCTTGTTCGAGATGGAAGACTACCCATCCCAAGGGGATAAGGAGA
CAAGGAGGCAGGTCATCACAGAAGAGGATGACGACAGCGGCTTCAGCGGA
AATGAAGGCGATGGTCCTCGAAGCGGAGGAGCCAATGCTACGCACGGGGG
AAGCAGCAACAATCCACTGACTGGTACCGGGCTCTCGTCGGATAGCGAGG
ACGAGGAGGAAGGCGATGCAGGGGGGGATGACGACAGCGGCTTCAGCGGA
AATGAAGGCGATGGTCCTCGAAGCGGAGGAGCCAATGCTACGCACGGGGG
AAGCAGCAACAATCCACTGACTGGTACCGGGCTCTCGTCGGATAGCGAGG
ACGAGGAGGAAGGCGATGCAGGGGGGGGAGAGGATGGTGCAGGAAGCGGG
GATGAGGATGCTCCGGTCGAGGCGTCAGGGGCTGCCGCTGCCGGGGGTGA
CAGTATGGATGATGACGATGATGACAACAATAATAACAAGTCCAGCTCGG
CCATGGAGAGGATGGTGCAGGAAGCGGGGATGAGGATGCTCCGGTCGAGG
CGTCAGGGGCTGCCGCTGCCGGGGGTGACAGTATGGATGATGACGATGAT
GACAACAATAATAACAAGTCCAGCTCGGCCATGAAGGATTTATTCGGAGA
TGACGACGAAGATGATGATGACGACGATGAGGCCGCAGACGGGGGTGGGG
AAGGATTTATTCGGAGATGACGACGAAGATGATGATGACGACGATGAGGC
CGCAGACGGGGGTGGG
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