mRNA_H-paniculata_contig57664.13349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57664.13349.1
Unique NamemRNA_H-paniculata_contig57664.13349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 7.680e-18
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA ++KW+FK K K DGS+ RYKARLV   FSQVE  D+ E  APV    T+R V ++A+++ F++  MD++ A+LN
Sbjct:  100 ELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLN 185
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 85.9 bits (211), Expect = 1.050e-17
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA   KWI KRK+K DGS+ +YKARLV Q F Q E  DFF+  APVA +ST+R + +LA+ +D  +  MD+  A+LN
Sbjct:    7 ELTDLPPGCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLN 92
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: Q8LSK0_MAIZE (Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LSK0_MAIZE)

HSP 1 Score: 85.5 bits (210), Expect = 1.560e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   16 PAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            P G K    KW+FK+KLK DG++ +YKARLVA+ ++Q E EDFF+  +PVA M+T+R + SLA+ Y   +  MD+  A+LN
Sbjct:  791 PYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLN 871
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-17
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   13 LPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            LP G K    KWIFKRK+K DGS+ +YKARLV Q F Q E  DFF+  APVA +ST+R + +LAS +   +  MD+  A+LN
Sbjct:   15 LPPGCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLN 96
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 2.120e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            DL  LPAG KA  ++W++K KL EDG   R+KARLVAQ F+QV   D+FE  APVA + +LR + +LA+ + + +  +D+  AYLN
Sbjct:  666 DLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLN 751
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 2.120e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            DL  LPAG KA  ++W++K KL EDG   R+KARLVAQ F+QV   D+FE  APVA + +LR + +LA+ + + +  +D+  AYLN
Sbjct:  667 DLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLN 752
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5E8C149_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C149_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.850e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA ++KW+FK K K DGS+ RYKARLV   FSQVE  D+ E  APV    T+R V ++A+++ F++  MD++ A+LN
Sbjct:  239 ELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLN 324
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.870e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA ++KW+FK K K DGS+ RYKARLV   FSQVE  D+ E  APV    T+R V ++A+++ F++  MD++ A+LN
Sbjct:  741 ELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLN 826
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.880e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA ++KW+FK K K DGS+ RYKARLV   FSQVE  D+ E  APV    T+R V ++A+++ F++  MD++ A+LN
Sbjct:  483 ELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLN 568
[Close]
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.890e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFEISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN 258
            +L  LP G KA ++KW+FK K K DGS+ RYKARLV   FSQVE  D+ E  APV    T+R V ++A+++ F++  MD++ A+LN
Sbjct:  575 ELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLN 660
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57664.13349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E8C1W8_9ASCO7.680e-1848.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2LJ48_TANCI1.050e-1751.16Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
Q8LSK0_MAIZE1.560e-1749.38Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LS... [more]
A0A5N6Q4G6_9ASTR1.830e-1752.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177TL22_9BASI2.120e-1748.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U0N4_9BASI2.120e-1748.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A5E8C149_9ASCO2.850e-1748.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C4W4_9ASCO2.870e-1748.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8CAT7_9ASCO2.880e-1748.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4Z1_9ASCO2.890e-1748.84Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57664contigH-paniculata_contig57664:247..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.7
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog15368.BRADI3G37625.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930624.5488625-CDS-H-paniculata_contig57664:246..5041622930624.5488625-CDS-H-paniculata_contig57664:246..504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57664 247..504 +
1691481377.643387-CDS-H-paniculata_contig57664:246..5041691481377.643387-CDS-H-paniculata_contig57664:246..504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57664 247..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57664.13349.1prot_H-paniculata_contig57664.13349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57664 247..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57664.13349.1

>prot_H-paniculata_contig57664.13349.1 ID=prot_H-paniculata_contig57664.13349.1|Name=mRNA_H-paniculata_contig57664.13349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
DLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQAFSQVEVEDFFE
ISAPVACMSTLRTVFSLASEYDFELEGMDLDAAYLN
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mRNA from alignment at H-paniculata_contig57664:247..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57664.13349.1 ID=mRNA_H-paniculata_contig57664.13349.1|Name=mRNA_H-paniculata_contig57664.13349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig57664:247..504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGGGAGGCTACCAGCAGGGCTGAAGGCCACTCATACAAAATGGAT
TTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGC
GACTGGTGGCTCAAGCTTTTTCACAGGTGGAGGTTGAAGATTTCTTTGAA
ATCAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTTTTTAGCCT
GGCCTCCGAATATGATTTCGAATTAGAAGGCATGGACTTAGATGCGGCAT
ATTTGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig57664:247..504+

>mRNA_H-paniculata_contig57664.13349.1 ID=mRNA_H-paniculata_contig57664.13349.1|Name=mRNA_H-paniculata_contig57664.13349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig57664:247..504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGGGAGGCTACCAGCAGGGCTGAAGGCCACTCATACAAAATGGAT
TTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGC
GACTGGTGGCTCAAGCTTTTTCACAGGTGGAGGTTGAAGATTTCTTTGAA
ATCAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTTTTTAGCCT
GGCCTCCGAATATGATTTCGAATTAGAAGGCATGGACTTAGATGCGGCAT
ATTTGAATGACCTGGGGAGGCTACCAGCAGGGCTGAAGGCCACTCATACA
AAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTA
CAAAGCGCGACTGGTGGCTCAAGCTTTTTCACAGGTGGAGGTTGAAGATT
TCTTTGAAATCAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTT
TTTAGCCTGGCCTCCGAATATGATTTCGAATTAGAAGGCATGGACTTAGA
TGCGGCATATTTGAAT
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