mRNA_H-paniculata_contig5745.13305.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5745.13305.1
Unique NamemRNA_H-paniculata_contig5745.13305.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5745.13305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5745contigH-paniculata_contig5745:9427..10281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5745.13305.1prot_H-paniculata_contig5745.13305.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5745 9429..10244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.2863588-UTR-H-paniculata_contig5745:9426..94281622930619.2863588-UTR-H-paniculata_contig5745:9426..9428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5745 9427..9428 +
1691481375.2527378-UTR-H-paniculata_contig5745:9426..94281691481375.2527378-UTR-H-paniculata_contig5745:9426..9428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5745 9427..9428 +
1622930619.340023-UTR-H-paniculata_contig5745:10244..102811622930619.340023-UTR-H-paniculata_contig5745:10244..10281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5745 10245..10281 +
1691481375.2838607-UTR-H-paniculata_contig5745:10244..102811691481375.2838607-UTR-H-paniculata_contig5745:10244..10281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5745 10245..10281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.3028672-CDS-H-paniculata_contig5745:9428..94491622930619.3028672-CDS-H-paniculata_contig5745:9428..9449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5745 9429..9449 +
1691481375.268019-CDS-H-paniculata_contig5745:9428..94491691481375.268019-CDS-H-paniculata_contig5745:9428..9449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5745 9429..9449 +
1622930619.3221622-CDS-H-paniculata_contig5745:10106..102441622930619.3221622-CDS-H-paniculata_contig5745:10106..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5745 10107..10244 +
1691481375.275724-CDS-H-paniculata_contig5745:10106..102441691481375.275724-CDS-H-paniculata_contig5745:10106..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5745 10107..10244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5745.13305.1

>prot_H-paniculata_contig5745.13305.1 ID=prot_H-paniculata_contig5745.13305.1|Name=mRNA_H-paniculata_contig5745.13305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MIGLTSEDGHGLSFFSWPRTGGDIKYPLFYWLLRAPRTLGLLVEGTAKVF
DD*
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mRNA from alignment at H-paniculata_contig5745:9427..10281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5745.13305.1 ID=mRNA_H-paniculata_contig5745.13305.1|Name=mRNA_H-paniculata_contig5745.13305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=855bp|location=Sequence derived from alignment at H-paniculata_contig5745:9427..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATGATTGGTCTTACGTCAGAGGTACACACATTCCAGTAGTTAGTGCCA
CCTGCTTAGCCCCCCCCCCCACGTGAACTCTGTTGATCCCTTTTTTCCAA
CTTTCCGCATTTTTTGGGATACTGTTCGTGATTCTTTTTTTTTAATGGCC
CCTTGCTCCATCGTAATATTTGTGTGATCATTTAACTAAATGGCTGTAGT
TGGCGATGGTAGGCAGCTGGCTGCGTCCAGAATCAGAAGCGTACACTGCA
ACTATTGACCATTGCCACTGGTCCGTTGGGTAATTCGTCGCCTCTAGGAA
AAACTTTGTTTTCACCATCATCTCTTGTTCGTGGCTGATCTACTCTGAGG
TAGTAGGGTGTGACGAAGCAGTTGTGCAGATGTCTAGCTTGATCACAACA
CCCCGTGAAGCATCGCACTCGACGTCGGCCTCTGATGAACACCCCCCACC
GACGCCCTCTTCTACTACGAAAATAAGCGAGCCTGACCAGAAGCGAGCGC
GAGGCTCTGAGGTGCGTTCGTCAAATGACGGCAATGGGGACTCATAAATG
TGTATGTCAAGTCATTCCTCGAAGGGTCATTTGATCCACTGTTCTGTGAT
GTACTACTACATCGCGCGAGTGATGTGCGTACGGCCAACCAATCTTTGAA
CTTATTTGTCTGCTGCAAATGCCGGTGAAGGACGGCCATGGGCTATCCTT
CTTCTCGTGGCCGAGAACGGGTGGAGACATCAAGTATCCCCTGTTCTATT
GGCTATTACGCGCACCTCGGACACTTGGACTTCTTGTGGAAGGCACTGCC
AAGGTTTTCGATGACTAGCTGAAGGTCTACCGGGGTACGCGAGTACAGGG
AGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5745:9427..10281+

>mRNA_H-paniculata_contig5745.13305.1 ID=mRNA_H-paniculata_contig5745.13305.1|Name=mRNA_H-paniculata_contig5745.13305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig5745:9427..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGGTCTTACGTCAGAGATGATTGGTCTTACGTCAGAGGACGGCCA
TGGGCTATCCTTCTTCTCGTGGCCGAGAACGGGTGGAGACATCAAGTATC
CCCTGTTCTATTGGCTATTACGCGCACCTCGGACACTTGGACTTCTTGTG
GAAGGCACTGCCAAGGTTTTCGATGACTAGGACGGCCATGGGCTATCCTT
CTTCTCGTGGCCGAGAACGGGTGGAGACATCAAGTATCCCCTGTTCTATT
GGCTATTACGCGCACCTCGGACACTTGGACTTCTTGTGGAAGGCACTGCC
AAGGTTTTCGATGACTAG
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